mRNA_Ecto-sp13_S_contig1589.4322.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1589.4322.1
Unique NamemRNA_Ecto-sp13_S_contig1589.4322.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1589.4322.1 vs. uniprot
Match: D7G7X0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X0_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 4.440e-37
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 VLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQFKPIYATRFIIEDTVEERIIKLQ 204
            VLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQFKPIYATRFIIEDTVEERIIKLQ
Sbjct:  474 VLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQFKPIYATRFIIEDTVEERIIKLQ 541
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BLAST of mRNA_Ecto-sp13_S_contig1589.4322.1 vs. uniprot
Match: A0A6H5JN56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN56_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.220e-36
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 VLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQFKPIYATRFIIEDTVEERIIKLQ 204
            VLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQFKPIYATRFIIEDTVEERIIKLQ
Sbjct: 1329 VLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQFKPIYATRFIIEDTVEERIIKLQ 1396
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BLAST of mRNA_Ecto-sp13_S_contig1589.4322.1 vs. uniprot
Match: A0A7S0GAW7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAW7_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.690e-36
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 VLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQFKPIYATRFIIEDTVEERIIKLQ 204
            VLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQ++PI A RFI EDTVEERI++LQ
Sbjct:   29 VLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQYRPIRAVRFIAEDTVEERILQLQ 96
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BLAST of mRNA_Ecto-sp13_S_contig1589.4322.1 vs. uniprot
Match: A0A6V1NWH0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NWH0_HETAK)

HSP 1 Score: 125 bits (315), Expect = 1.960e-34
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 VLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQFKPIYATRFIIEDTVEERIIKLQ 204
            VLLISLKAGGVALNLTVANHIFLMDPWWNPA EMQAIDRTHR+GQ KPI A RF+IEDTVEERI++LQ
Sbjct:  145 VLLISLKAGGVALNLTVANHIFLMDPWWNPAGEMQAIDRTHRIGQAKPIRAVRFVIEDTVEERILRLQ 212
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BLAST of mRNA_Ecto-sp13_S_contig1589.4322.1 vs. uniprot
Match: A0A7S0AJ66_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AJ66_9STRA)

HSP 1 Score: 120 bits (301), Expect = 6.120e-34
Identity = 57/68 (83.82%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 VLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQFKPIYATRFIIEDTVEERIIKLQ 204
            VLL+SLKAGGVALNLTVANH++LMDPWWNPAAEMQAIDRTHRLGQ +PI A RFI E+TVEERI++LQ
Sbjct:   11 VLLMSLKAGGVALNLTVANHLYLMDPWWNPAAEMQAIDRTHRLGQHRPIRAVRFIAENTVEERILQLQ 78
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BLAST of mRNA_Ecto-sp13_S_contig1589.4322.1 vs. uniprot
Match: A0A397BBU2_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BBU2_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.220e-33
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 VLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQFKPIYATRFIIEDTVEERIIKLQ 204
            V LISLKAGGVALNLTVA+HIFLMDPWWNPAAE QAIDRTHRLGQFKPI ATRF+I +T+EERI+KLQ
Sbjct:  135 VFLISLKAGGVALNLTVASHIFLMDPWWNPAAEHQAIDRTHRLGQFKPIRATRFVIANTIEERILKLQ 202
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BLAST of mRNA_Ecto-sp13_S_contig1589.4322.1 vs. uniprot
Match: A0A7S2E9R3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E9R3_TRICV)

HSP 1 Score: 122 bits (306), Expect = 3.370e-33
Identity = 58/68 (85.29%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 VLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQFKPIYATRFIIEDTVEERIIKLQ 204
            VLL+SLKAGGVALNLTVANHI+LMDPWWNPAAEMQAIDRTHRLGQ++PI A RFI E+TVEERI++LQ
Sbjct:  135 VLLMSLKAGGVALNLTVANHIYLMDPWWNPAAEMQAIDRTHRLGQYRPIRAIRFIAENTVEERILQLQ 202
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BLAST of mRNA_Ecto-sp13_S_contig1589.4322.1 vs. uniprot
Match: W7TXY3_9STRA (Snf2 super family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXY3_9STRA)

HSP 1 Score: 127 bits (320), Expect = 9.990e-33
Identity = 59/68 (86.76%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:    1 VLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQFKPIYATRFIIEDTVEERIIKLQ 204
            VLLISLKAGGVALNLT ANHI+LMDPWWNPAAEMQAIDRTHR+GQ+KPI+ATRFI+E+T+EERI+KLQ
Sbjct: 1061 VLLISLKAGGVALNLTHANHIYLMDPWWNPAAEMQAIDRTHRIGQYKPIFATRFILENTIEERILKLQ 1128
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BLAST of mRNA_Ecto-sp13_S_contig1589.4322.1 vs. uniprot
Match: A0A836CRA2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRA2_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.860e-32
Identity = 60/68 (88.24%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:    1 VLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQFKPIYATRFIIEDTVEERIIKLQ 204
            VLLISLKAGGVALNLTVA++ FLMDPWWNPAAEMQAIDRTHR+GQFKPI+A RFIIEDT+EERI+KLQ
Sbjct:  900 VLLISLKAGGVALNLTVASYCFLMDPWWNPAAEMQAIDRTHRMGQFKPIHAVRFIIEDTIEERILKLQ 967
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BLAST of mRNA_Ecto-sp13_S_contig1589.4322.1 vs. uniprot
Match: R1CDK1_EMIHU (Helicase C-terminal domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CDK1_EMIHU)

HSP 1 Score: 116 bits (290), Expect = 4.000e-32
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 VLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQFKPIYATRFIIEDTVEERIIKLQ 204
            V+LISLKAGGVALNLTVA+HI+LMDPWWNPAAE QAIDR HRLGQ KPI A RF++ +TVEERI++LQ
Sbjct:   21 VILISLKAGGVALNLTVASHIYLMDPWWNPAAEYQAIDRAHRLGQHKPIRAVRFVVRNTVEERILRLQ 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1589.4322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7X0_ECTSI4.440e-37100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JN56_9PHAE1.220e-36100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0GAW7_9STRA2.690e-3689.71Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A6V1NWH0_HETAK1.960e-3488.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0AJ66_9STRA6.120e-3483.82Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A397BBU2_9STRA1.220e-3386.76Helicase C-terminal domain-containing protein n=1 ... [more]
A0A7S2E9R3_TRICV3.370e-3385.29Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
W7TXY3_9STRA9.990e-3386.76Snf2 super family n=2 Tax=Monodopsidaceae TaxID=42... [more]
A0A836CRA2_9STRA1.860e-3288.24P-loop containing nucleoside triphosphate hydrolas... [more]
R1CDK1_EMIHU4.000e-3279.41Helicase C-terminal domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1589contigEcto-sp13_S_contig1589:4..328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score139.0
Seed ortholog evalue8e-31
Seed eggNOG ortholog2880.D7G7X0
Preferred nameRAD16
Model size204
KEGG koko:K08066,ko:K12850,ko:K15083
KEGG Pathwayko03040,ko04612,ko05152,map03040,map04612,map05152
Hectar predicted targeting categorysignal peptide
GOsGO:0000109,GO:0000113,GO:0000151,GO:0000166,GO:0000715,GO:0000720,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0004842,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006290,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016043,GO:0016462,GO:0016567,GO:0016740,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0019787,GO:0030554,GO:0031461,GO:0031463,GO:0032392,GO:0032446,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0035639,GO:0036094,GO:0036211,GO:0042623,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051179,GO:0051276,GO:0051641,GO:0051716,GO:0061630,GO:0061659,GO:0070035,GO:0070647,GO:0070727,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1990234,GO:1990391
Exons2
EggNOG free text desc.pyrimidine dimer repair by nucleotide-excision repair
EggNOG OGsCOG0141@1,KOG1002@2759
Cds size204
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko03041,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462839.1990082-CDS-Ecto-sp13_S_contig1589:3..801681462839.1990082-CDS-Ecto-sp13_S_contig1589:3..80Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1589 4..80 +
1681462839.2119732-CDS-Ecto-sp13_S_contig1589:201..3281681462839.2119732-CDS-Ecto-sp13_S_contig1589:201..328Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1589 202..328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1589.4322.1prot_Ecto-sp13_S_contig1589.4322.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1589 4..328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1589.4322.1

>prot_Ecto-sp13_S_contig1589.4322.1 ID=prot_Ecto-sp13_S_contig1589.4322.1|Name=mRNA_Ecto-sp13_S_contig1589.4322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
VLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQFKPIY
ATRFIIEDTVEERIIKLQ
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mRNA from alignment at Ecto-sp13_S_contig1589:4..328+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1589.4322.1 ID=mRNA_Ecto-sp13_S_contig1589.4322.1|Name=mRNA_Ecto-sp13_S_contig1589.4322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=325bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1589:4..328+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTCCTCATCAGCCTCAAGGCCGGAGGTGTGGCGCTTAACCTTACGGT
CGCCAACCACATCTTCCTCATGGATCCGTGAGTTGATTTTGGAGAGTTGT
ACGTGTGTGTGTGTGGGTCGTTGGTGCGCTGTCGGAGTATGTTTGAACTC
CGCCTTTGCTACACAACGCCGTCCGCTTCTTTTTTGCCCTTTGACCAGGT
GGTGGAACCCTGCCGCTGAGATGCAAGCAATCGACCGCACCCACCGGCTT
GGGCAGTTCAAGCCCATCTACGCCACTCGCTTCATCATCGAGGACACTGT
CGAGGAGCGCATTATCAAGCTACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1589:4..328+

>mRNA_Ecto-sp13_S_contig1589.4322.1 ID=mRNA_Ecto-sp13_S_contig1589.4322.1|Name=mRNA_Ecto-sp13_S_contig1589.4322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1589:4..328+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTCCTCATCAGCCTCAAGGCCGGAGGTGTGGCGCTTAACCTTACGGT
CGCCAACCACATCTTCCTCATGGATCCGTGGTGGAACCCTGCCGCTGAGA
TGCAAGCAATCGACCGCACCCACCGGCTTGGGCAGTTCAAGCCCATCTAC
GCCACTCGCTTCATCATCGAGGACACTGTCGAGGAGCGCATTATCAAGCT
ACAG
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