prot_Ecto-sp13_S_contig15883.4318.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15883.4318.1
Unique Nameprot_Ecto-sp13_S_contig15883.4318.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length168
Homology
BLAST of mRNA_Ecto-sp13_S_contig15883.4318.1 vs. uniprot
Match: A0A6H5JVV4_9PHAE (HIG1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JVV4_9PHAE)

HSP 1 Score: 284 bits (726), Expect = 1.950e-95
Identity = 154/167 (92.22%), Postives = 157/167 (94.01%), Query Frame = 0
Query:    1 FRKSTSVSAKTALAVSPFFLFYLLRTELVMHGANHDPHAYGIVDDVVGADGTTRKSKILQPRKELNAAQQLANWCYVNPFKMVVGMGVPAVGGILYSMRNEGNLKLSQKLIHTRVYGQMTVVSMAVAMMAFQETMRRRGGLFVVTXXXXXXXXXXXEVEGAIVPRSK 167
            FRKSTSVSAKTALAVSPFFLFYLLR+ELVMHGANHDPHAYGIVDDVVGADGTT KSKILQPR+ELNAAQQLANWCYVNPFKMVVGMGVPAVGGILYSMRNEGNLKLSQKLIHTRVYGQMTVVS+AVAMM FQETMRRRGGLF V    XXXXXX  EVEGAIV RSK
Sbjct:   49 FRKSTSVSAKTALAVSPFFLFYLLRSELVMHGANHDPHAYGIVDDVVGADGTTGKSKILQPREELNAAQQLANWCYVNPFKMVVGMGVPAVGGILYSMRNEGNLKLSQKLIHTRVYGQMTVVSIAVAMMVFQETMRRRGGLFTVPGAEXXXXXX--EVEGAIVSRSK 213          
BLAST of mRNA_Ecto-sp13_S_contig15883.4318.1 vs. uniprot
Match: A0A835YR00_9STRA (HIG1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR00_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.600e-28
Identity = 67/145 (46.21%), Postives = 87/145 (60.00%), Query Frame = 0
Query:    1 FRKSTSVSAKTALAVSPFFLFYLLRTELVMHGANHDPHAYGIVDDVVGADGTTRKSKILQPRKELNAAQQLANWCYVNPFKMVVGMGVPAVGGILYSMRNEGN--LKLSQKLIHTRVYGQMTVVSMAVAMMAFQETMRRRGGLFV 143
            FR  T+VSAK ALA+SP    Y L  E  M  A HDP  YGI     G   T ++++  Q R  L    +LAN  Y NPF  +  +GVPAVG I +    EG+  LK SQK++HTRV+GQMTV+ + V+ M F++ M R GGL+V
Sbjct:   45 FRVRTNVSAKVALAISPPLALYNLMAERTMIRAQHDPALYGIYPK--GHVATAQQAR--QQRATLRWYHRLANGAYSNPFAFIAALGVPAVGAIFWQQSREGHAHLKFSQKVMHTRVFGQMTVLGVLVSTMVFRDYMYRNGGLYV 185          
BLAST of mRNA_Ecto-sp13_S_contig15883.4318.1 vs. uniprot
Match: A0A835ZA60_9STRA (HIG1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA60_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.030e-25
Identity = 64/145 (44.14%), Postives = 83/145 (57.24%), Query Frame = 0
Query:    1 FRKSTSVSAKTALAVSPFFLFYLLRTELVMHGANHDPHAYGIVDDVVGADGTTRKSKILQPRKELNAAQQLANWCYVNPFKMVVGMGVPAVGGILYSMRNEGN--LKLSQKLIHTRVYGQMTVVSMAVAMMAFQETMRRRGGLFV 143
            F   T+VSA+ ALA+SP    Y +  E VM GA  DP  YGI        G        Q    L    +LAN  Y NPF ++ G+GVPAVG I +    EG+  LK SQK++HTRV+GQMTV+ + V+ M F++ M + GGLFV
Sbjct:   44 FVAKTNVSARVALAISPPLGAYFVVAEKVMSGAQTDPAKYGIFPK-----GHMAAQPTEQRLPSLQWYHRLANTAYSNPFGLIAGVGVPAVGAIFWQQSREGHNHLKFSQKVMHTRVFGQMTVLGVLVSTMFFRDYMYKNGGLFV 183          
BLAST of mRNA_Ecto-sp13_S_contig15883.4318.1 vs. uniprot
Match: A0A7S2W876_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W876_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.730e-20
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 0
Query:    1 FRKSTSVSAKTALAVSPFFLFYLLRTELVMHGANHDPHAYGIVDDVVGADGTTRKSKILQPRKELNAAQQLANWCYVNPFKMVVGMGVPAVGGILYSMRNEGNLKLSQKLIHTRVYGQMTVVSMAVAMMAFQETMRRRG 139
            FR S  +S K A+ +SP    + L +E  M     +P  YG+  D   A    + +     + +L A  + ANW Y +PF ++ G  VP VG I YS     +LKLSQK++HTRV GQ +VV++ +++M F++ M R G
Sbjct:   52 FRTSLGISGKVAMVMSPIVGTFFLVSEHTMSDVKFNPRKYGLNRDGSLATAPVQMNSPNVLKGQLMAHHRAANWAYDHPFHVLAGCAVPLVGSIFYSQTGHDHLKLSQKIMHTRVLGQASVVTLLLSVMFFRDYMDRHG 190          
BLAST of mRNA_Ecto-sp13_S_contig15883.4318.1 vs. uniprot
Match: D0N565_PHYIT (HIG1 domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N565_PHYIT)

HSP 1 Score: 85.5 bits (210), Expect = 1.290e-17
Identity = 58/143 (40.56%), Postives = 84/143 (58.74%), Query Frame = 0
Query:    1 FRKSTSVSAKTALAVSPFFLFYLLRTEL-VMHGANHDPHAYGIVDDVVGADGT--TRKSKILQPRKELNAAQQLANWCYVNPFKMVVGMGVPAVGGIL-YSMRNEGNLKLSQKLIHTRVYGQMTVVSMAVAMMAFQETMRRRG 139
            FR   +VS KTAL VSPF   + L  E  +MHGA + P  Y     +   DGT   ++ K+ Q    L   Q+ AN+ Y +P++ ++ +GVP VGGI  Y   N+G +  SQ+++HTR+YGQ  VV M ++ MAF + M +RG
Sbjct:   58 FRNRLNVSGKTALVVSPFLAAFTLEAETRLMHGARN-PEMY-----LATMDGTYVEKEEKVSQ----LKFWQKSANFLYDHPYRALITVGVPLVGGIYSYQHLNKG-ISTSQQIMHTRIYGQAAVVVMLLSSMAFHDYMAKRG 189          
BLAST of mRNA_Ecto-sp13_S_contig15883.4318.1 vs. uniprot
Match: A0A7S2JFN4_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JFN4_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 3.650e-17
Identity = 51/145 (35.17%), Postives = 71/145 (48.97%), Query Frame = 0
Query:    1 FRKSTSVSAKTALAVSPFFLFYLLRTELVMHGANHDPHAYGIVDDVVGADGTTRKSKILQPRKELNAAQQLANWCYVNPFKMVVGMGVPAVGGILYSMR---NEGNLKLSQKLIHTRVYGQMTVVSMAVAMMAFQETMRRRGGLF 142
            FR    +S K AL V+P F  ++L++ L +     DP  +     V G       S +   +  L+  Q  AN  Y +PFK ++G+  P  G I Y         N  LSQ+LIHTRVYGQM  V   V +M F E M+  GG++
Sbjct:  105 FRSLLGISGKAALVVTPSFGAFVLKSHLTLAAVGRDPDGF-----VAGNAPAAAPSPVAPRQSSLSTWQSAANSIYCHPFKTIIGIAAPIYGYIFYRESVGVATANFPLSQRLIHTRVYGQMVAVISTVVVMGFVENMKTEGGIY 244          
BLAST of mRNA_Ecto-sp13_S_contig15883.4318.1 vs. uniprot
Match: A0A225VHV2_9STRA (Putative membrane protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VHV2_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.950e-16
Identity = 57/141 (40.43%), Postives = 81/141 (57.45%), Query Frame = 0
Query:    1 FRKSTSVSAKTALAVSPFF-LFYLLRTELVMHGANHDPHAYGIVDDVVGADGTTRKSKILQPRKELNAAQQLANWCYVNPFKMVVGMGVPAVGGIL-YSMRNEGNLKLSQKLIHTRVYGQMTVVSMAVAMMAFQETMRRRG 139
            FR   SVS KTAL VSPF   F L+    +M GA + P  Y     +   DGT    K  Q   +L   Q+ AN+ Y +P++ +V +G P VGGI  Y   N+G +  SQ+++HTR+YGQ +VV + ++ MAF + M +RG
Sbjct:   58 FRSRLSVSGKTALVVSPFLGAFTLVAETRLMEGARN-PEMY-----MASMDGTYVAPK--QEASQLKLWQKGANFLYDHPYRCLVTVGAPIVGGIYGYQHLNKG-ISTSQQIMHTRIYGQASVVVLLLSSMAFHDYMAKRG 189          
BLAST of mRNA_Ecto-sp13_S_contig15883.4318.1 vs. uniprot
Match: A0A329RZG3_9STRA (HIG1 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RZG3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.950e-16
Identity = 54/141 (38.30%), Postives = 81/141 (57.45%), Query Frame = 0
Query:    1 FRKSTSVSAKTALAVSPFF-LFYLLRTELVMHGANHDPHAYGIVDDVVGADGTTRKSKILQPRKELNAAQQLANWCYVNPFKMVVGMGVPAVGGIL-YSMRNEGNLKLSQKLIHTRVYGQMTVVSMAVAMMAFQETMRRRG 139
            FR   +VS KTAL +SPF   F ++    +MHGA + P  Y    D      T  KS       +L   Q+ AN+ Y +P++ ++ +GVP VGGI  Y   N+G +  SQ+++HTR+YGQ +VV + ++ MAF + M +RG
Sbjct:   58 FRNRLNVSGKTALVISPFLGAFTIVAENRLMHGARN-PELYMATMDGSYVAPTKEKS-------QLKFWQKSANFLYDHPYRALITVGVPLVGGIYSYQHLNKG-ISTSQQIMHTRIYGQASVVVLLLSSMAFHDYMAKRG 189          
BLAST of mRNA_Ecto-sp13_S_contig15883.4318.1 vs. uniprot
Match: A0A0M0J3K9_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J3K9_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 2.620e-16
Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 0
Query:    1 FRKSTSVSAKTALAVSPFFLFYLLRTELVMHGANHDPHAYGIVDDVVGADGTTRKSKILQPRKELNAAQQLANWCYVNPFKMVVGMGVPAVGGILY---SMRNEGNLKLSQKLIHTRVYGQMTVVSMAVAMMAFQETMRRRGGLFVV 144
            FR    VS K AL V+P    + LR++  ++ A HD   + I   +  A+  T  + I Q  +EL+  Q+ AN  Y +PFK ++ +  P  G + Y   +  +  ++ LSQ+LIHTRVYGQM  V   VA+M F +TM   GG++ V
Sbjct:   44 FRSMFGVSGKLALIVTPSLGAFFLRSQQTINQALHDADGF-IAPQLAAAE--TVAAPIFQ--RELSPLQEAANMVYTHPFKTIMSIAGPIYGALFYRESTHPSTAHMPLSQRLIHTRVYGQMVAVLSTVAVMGFAKTMEGSGGIYRV 185          
BLAST of mRNA_Ecto-sp13_S_contig15883.4318.1 vs. uniprot
Match: H3GRL4_PHYRM (HIG1 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GRL4_PHYRM)

HSP 1 Score: 82.0 bits (201), Expect = 2.740e-16
Identity = 55/141 (39.01%), Postives = 81/141 (57.45%), Query Frame = 0
Query:    1 FRKSTSVSAKTALAVSPFF-LFYLLRTELVMHGANHDPHAYGIVDDVVGADGTTRKSKILQPRKELNAAQQLANWCYVNPFKMVVGMGVPAVGGIL-YSMRNEGNLKLSQKLIHTRVYGQMTVVSMAVAMMAFQETMRRRG 139
            FR   +VS KTAL VSPF   F L+    +MHGA + P  Y     +   DG+    K  Q    L   Q+ AN+ Y +P++ ++ +G P VGGI  Y   N+G +  SQ+++HTR+YGQ +VV + ++ MAF + M +RG
Sbjct:   58 FRNRLNVSGKTALVVSPFLGAFTLVAENRLMHGARN-PELY-----MATMDGSYVAPK--QETSHLKFWQKSANFLYDHPYRALITVGTPLVGGIYGYQHMNKG-ISASQQIMHTRIYGQASVVVLLLSSMAFHDYMAKRG 189          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15883.4318.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVV4_9PHAE1.950e-9592.22HIG1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YR00_9STRA2.600e-2846.21HIG1 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835ZA60_9STRA4.030e-2544.14HIG1 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2W876_9STRA3.730e-2036.69Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D0N565_PHYIT1.290e-1740.56HIG1 domain-containing protein n=2 Tax=Phytophthor... [more]
A0A7S2JFN4_9EUKA3.650e-1735.17Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A225VHV2_9STRA1.950e-1640.43Putative membrane protein n=1 Tax=Phytophthora meg... [more]
A0A329RZG3_9STRA1.950e-1638.30HIG1 domain-containing protein n=2 Tax=Phytophthor... [more]
A0A0M0J3K9_9EUKA2.620e-1636.73Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
H3GRL4_PHYRM2.740e-1639.01HIG1 domain-containing protein n=1 Tax=Phytophthor... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007667Hypoxia induced protein, domainPFAMPF04588HIG_1_Ncoord: 90..126
e-value: 6.8E-5
score: 23.0
IPR007667Hypoxia induced protein, domainPROSITEPS51503HIG1coord: 52..143
score: 13.783
NoneNo IPR availablePANTHERPTHR28018:SF2RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIALcoord: 62..152
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 132..167
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..114
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..24
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 115..131
NoneNo IPR availableTMHMMTMhelixcoord: 75..97
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 110..132
IPR040153Respiratory supercomplex factor 2, mitochondrialPANTHERPTHR28018FAMILY NOT NAMEDcoord: 62..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15883contigEcto-sp13_S_contig15883:102..2392 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15883.4318.1mRNA_Ecto-sp13_S_contig15883.4318.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15883 102..2392 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15883.4318.1 ID=prot_Ecto-sp13_S_contig15883.4318.1|Name=mRNA_Ecto-sp13_S_contig15883.4318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp
FRKSTSVSAKTALAVSPFFLFYLLRTELVMHGANHDPHAYGIVDDVVGAD
GTTRKSKILQPRKELNAAQQLANWCYVNPFKMVVGMGVPAVGGILYSMRN
EGNLKLSQKLIHTRVYGQMTVVSMAVAMMAFQETMRRRGGLFVVTEAEEE
EEGEEEEVEGAIVPRSK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007667Hypoxia_induced_domain
IPR040153Rcf2