mRNA_Ecto-sp13_S_contig1588.4316.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig1588.4316.1
Unique Name	mRNA_Ecto-sp13_S_contig1588.4316.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1588.4316.1 vs. uniprot
Match: A0A6H5JQ31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ31_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 3.750e-54
Identity = 98/142 (69.01%), Postives = 101/142 (71.13%), Query Frame = 1

Query:    1 MLIAPWGIYYAR-----------------------------------------GRTSEAHAHWGYYMIAAVALQIFTGWMRTKGLEAKHSNFSLLHRFNKHFHIWAGRFAYAAGLVQCYRGLELVSSDDELLFSAGDGLDLE 303
            MLIAPWGIYYAR                                         GRTSEAHAHWGYYMIAAVA+QIFTGWMRTKGLEAKHSNFSLLHRFNKHFHIWAGRFAYAAGLVQCYRGLELVSSDDEL+FSAGDGLDL+
Sbjct:  652 MLIAPWGIYYARYRKGDAIKWAGRQWYEMHEEIMIVASEAVLPLGITAVFASRGRTSEAHAHWGYYMIAAVAMQIFTGWMRTKGLEAKHSNFSLLHRFNKHFHIWAGRFAYAAGLVQCYRGLELVSSDDELIFSAGDGLDLQ 793

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BLAST of mRNA_Ecto-sp13_S_contig1588.4316.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 5.190e-54
Identity = 97/143 (67.83%), Postives = 102/143 (71.33%), Query Frame = 1

Query:    1 MLIAPWGIYYAR-----------------------------------------GRTSEAHAHWGYYMIAAVALQIFTGWMRTKGLEAKHSNFSLLHRFNKHFHIWAGRFAYAAGLVQCYRGLELVSSDDELLFSAGDGLDLEV 306
            MLIAPWGIYYAR                                         GRTSEAHAHWGYYMIAAVA+QIFTGWMRTKGLEAKHSNFSLLHRFNKHFHIWAGRFAYAAG+VQCYRGLELVSSDDEL+FSAGDGLDL++
Sbjct:  668 MLIAPWGIYYARYRKGDAIKWAGREWYEMHEDIMIVASEAVLPLGITAVFASRGRTSEAHAHWGYYMIAAVAMQIFTGWMRTKGLEAKHSNFSLLHRFNKHFHIWAGRFAYAAGVVQCYRGLELVSSDDELIFSAGDGLDLQL 810

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BLAST of mRNA_Ecto-sp13_S_contig1588.4316.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 6.520e-51
Identity = 93/143 (65.03%), Postives = 99/143 (69.23%), Query Frame = 1

Query:    1 MLIAPWGIYYAR-----------------------------------------GRTSEAHAHWGYYMIAAVALQIFTGWMRTKGLEAKHSNFSLLHRFNKHFHIWAGRFAYAAGLVQCYRGLELVSSDDELLFSAGDGLDLEV 306
            M+IAPWGIYYAR                                         GRTSEAHA WGYYMIAAVA+QIFTGWMRTKGLEAKHSNFSL HRFNK FHIWAGRFAYAAG+VQCYRGLELVSSDDEL+FSAGDGLDL++
Sbjct:  667 MIIAPWGIYYARYRKGDAIKWAGREWYEMHEEIMIVASEAVLPLGITAVFASRGRTSEAHARWGYYMIAAVAMQIFTGWMRTKGLEAKHSNFSLFHRFNKFFHIWAGRFAYAAGVVQCYRGLELVSSDDELIFSAGDGLDLQL 809

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BLAST of mRNA_Ecto-sp13_S_contig1588.4316.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 5.950e-36
Identity = 65/103 (63.11%), Postives = 80/103 (77.67%), Query Frame = 1

Query:    7 IAPWGI---YYARGRTSEAHAHWGYYMIAAVALQIFTGWMRTKGLEAKHSNFSLLHRFNKHFHIWAGRFAYAAGLVQCYRGLELVSSDDELLFSAGDGLDLEV 306
            + P GI   + + G     HAHWGYYMIAAV  Q+ +GW+R KGL  K++NF L HR NK FHI+AGRFAY AG+VQCYRGLELV+SDD+L+FSAGDGLDL++
Sbjct:  282 VLPLGITAIFASGGEHQNEHAHWGYYMIAAVIAQVLSGWLRVKGLGGKNANFCLFHRCNKFFHIYAGRFAYLAGVVQCYRGLELVASDDQLIFSAGDGLDLQL 384

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BLAST of mRNA_Ecto-sp13_S_contig1588.4316.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 6.040e-36
Identity = 62/90 (68.89%), Postives = 74/90 (82.22%), Query Frame = 1

Query:   37 GRTSEAHAHWGYYMIAAVALQIFTGWMRTKGLEAKHSNFSLLHRFNKHFHIWAGRFAYAAGLVQCYRGLELVSSDDELLFSAGDGLDLEV 306
            G     HAHWGYYMI AV  Q+ +GW+R KGL  K++NFSL HR NK FHI+AGRFAY AG+VQCYRGLELV+SDD+L+FSAGDGLDL++
Sbjct:  985 GEHQHEHAHWGYYMIVAVVAQVLSGWLRVKGLGGKNANFSLFHRCNKFFHIYAGRFAYLAGVVQCYRGLELVASDDQLIFSAGDGLDLQL 1074

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BLAST of mRNA_Ecto-sp13_S_contig1588.4316.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 8.200e-36
Identity = 66/103 (64.08%), Postives = 82/103 (79.61%), Query Frame = 1

Query:    7 IAPWGI--YYARG-RTSEAHAHWGYYMIAAVALQIFTGWMRTKGLEAKHSNFSLLHRFNKHFHIWAGRFAYAAGLVQCYRGLELVSSDDELLFSAGDGLDLEV 306
            + P GI   +A G +    HAHWGYYMI AV  Q+ +GW+R KGL  K++NFS+ HRFNK FHI+AGRFAY AG+VQCYRGLELV+SDD+L+FSAGDGLDL++
Sbjct:  799 VLPLGITAIFASGSQRGTEHAHWGYYMIIAVMAQVLSGWLRVKGLGGKNANFSVFHRFNKFFHIYAGRFAYLAGVVQCYRGLELVASDDKLIFSAGDGLDLQL 901

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BLAST of mRNA_Ecto-sp13_S_contig1588.4316.1 vs. uniprot
Match: D8LB74_ECTSI (Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB74_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 5.330e-23
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1

Query:   76 MIAAVALQIFTGWMRTKGLEAKHSNFSLLHRFNKHFHIWAGRFAYAAGLVQCYRGLELVSSDDELLFSAGD 288
            M+ A+ LQI TG+ R + LEAK +NFSL HR NKHFHI AG FAYAAGLVQCYRGLELVS  D+L+FSA D
Sbjct:    1 MVGAIVLQIGTGFARVRALEAKSNNFSLFHRVNKHFHISAGWFAYAAGLVQCYRGLELVSGSDKLIFSAVD 71

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BLAST of mRNA_Ecto-sp13_S_contig1588.4316.1 vs. uniprot
Match: D7FQW8_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW8_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.440e-20
Identity = 54/102 (52.94%), Postives = 64/102 (62.75%), Query Frame = 1

Query:    1 MLIAPWGIYYARGRTSEAHAHWGYYMIAAVALQIFTGWMRTKGLEAKHSNFSLLHRFNKHFHIWAGRFAYAAGLVQCYRGLELVSSDDELLFSAGDGLDLEV 306
            M++AP GIYY R R  E    W  +    +  +I         + A  +   L   FNKHFHIWAGRFAY AG+VQCYRGLELVSSDD L+ SAGDGLDLE+
Sbjct:  635 MVLAPVGIYYVRYRKGE-RVKWAGFEWFEMHQEIM--------IVASEAVLPL--GFNKHFHIWAGRFAYLAGVVQCYRGLELVSSDDNLVLSAGDGLDLEI 725

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BLAST of mRNA_Ecto-sp13_S_contig1588.4316.1 vs. uniprot
Match: A0A6H5JX59_9PHAE (Cytochrome b5 heme-binding domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX59_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.660e-20
Identity = 48/84 (57.14%), Postives = 54/84 (64.29%), Query Frame = 1

Query:   37 GRTSEAHAHWGYYMIAAVALQIFTGWMRTKGLEAKHSNFSLLHRFNKHFHIWAGRFAYAAGLVQCYRGLELVSSDDELLFSAGD 288
            G  +  HA WG+               R + LEAK +NFSL HR NKHFHIWAG FAYAAGLVQCYRGLE VS  D+L+FSA D
Sbjct:   56 GLHNSEHAKWGF--------------ARVRALEAKSNNFSLFHRVNKHFHIWAGWFAYAAGLVQCYRGLEQVSGSDKLIFSAVD 125

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BLAST of mRNA_Ecto-sp13_S_contig1588.4316.1 vs. uniprot
Match: A0A6H5JWZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ0_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.640e-9
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 1

Query:  160 LHRFNKHFHIWAGRFAYAAGLVQCYRGLELVSSDDELLF 276
            LH+FNK FHI+AGRFAY  G++Q YRGLELV+SDD+ +F
Sbjct:  474 LHKFNKFFHIYAGRFAYLTGVIQGYRGLELVASDDKPVF 512

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1588.4316.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1588.4316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10


Match Name	E-value	Identity	Description
A0A6H5JQ31_9PHAE	3.750e-54	69.01	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G7J2_ECTSI	5.190e-54	67.83	Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28...	[more]
D7G7J1_ECTSI	6.520e-51	65.03	Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28...	[more]
D7FX04_ECTSI	5.950e-36	63.11	Dopamine beta-monooxygenase, putative n=1 Tax=Ecto...	[more]
A0A6H5JBL8_9PHAE	6.040e-36	68.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LFE6_ECTSI	8.200e-36	64.08	Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28...	[more]
D8LB74_ECTSI	5.330e-23	70.42	Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus ...	[more]
D7FQW8_ECTSI	1.440e-20	52.94	Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28...	[more]
A0A6H5JX59_9PHAE	3.660e-20	57.14	Cytochrome b5 heme-binding domain-containing prote...	[more]
A0A6H5JWZ0_9PHAE	5.640e-9	69.23	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1588	contig	Ecto-sp13_S_contig1588:8904..10152 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	189.1
Seed ortholog evalue	1e-45
Seed eggNOG ortholog	2880.D7G7J2
Model size	318
Hectar predicted targeting category	other localisation
Exons	3
EggNOG free text desc.	peroxidase activity
EggNOG OGs	KOG2408@1,KOG2408@2759
Ec32 ortholog description	Hypothetical protein
Ec32 ortholog	Ec-02_000490.1
Cds size	318
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462838.8567414-CDS-Ecto-sp13_S_contig1588:8903..8938	1681462838.8567414-CDS-Ecto-sp13_S_contig1588:8903..8938	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1588 8904..8938 +
1681462838.8682613-CDS-Ecto-sp13_S_contig1588:9507..9640	1681462838.8682613-CDS-Ecto-sp13_S_contig1588:9507..9640	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1588 9508..9640 +
1681462838.8784287-CDS-Ecto-sp13_S_contig1588:10002..10152	1681462838.8784287-CDS-Ecto-sp13_S_contig1588:10002..10152	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1588 10003..10152 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1588.4316.1	prot_Ecto-sp13_S_contig1588.4316.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig1588 8904..10152 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig1588:8904..10152+
coding sequence from alignment at Ecto-sp13_S_contig1588:8904..10152+

protein sequence of mRNA_Ecto-sp13_S_contig1588.4316.1

>prot_Ecto-sp13_S_contig1588.4316.1 ID=prot_Ecto-sp13_S_contig1588.4316.1|Name=mRNA_Ecto-sp13_S_contig1588.4316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
MLIAPWGIYYARGRTSEAHAHWGYYMIAAVALQIFTGWMRTKGLEAKHSN
FSLLHRFNKHFHIWAGRFAYAAGLVQCYRGLELVSSDDELLFSAGDGLDL
EVKPR*

mRNA from alignment at Ecto-sp13_S_contig1588:8904..10152+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig1588.4316.1 ID=mRNA_Ecto-sp13_S_contig1588.4316.1|Name=mRNA_Ecto-sp13_S_contig1588.4316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1588:8904..10152+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCATCGCACCGTGGGGCATCTACTACGCGAGGTGAGCTGTATGGAT
ACGATCAATCTGTTCTATCTGGGAACCACCGCCTGAGGCCAAATTGTGGC
CTGGAAGCAAGCGGTCTGCTGCAGATCATCTCGTTCTCATGGCTGGCTTG
GTGAAACGGCAGCATCACGTTTCCGGTCGGGAGTGGATGACCGGGCAACA
AAAATAGACCCAGCACGTCCAAATTCTCGCCCATTCCGAAATCCAACACG
AATAATGTCCACCATGGACCCAATCACGGCGTGTTTTCCACGGCTTGCCC
CCGGTCGTAATCCTGGTATGTCATGTGTGCTGTCCGTCCAACTGGGGACC
GCGGAGGTTGCTTGTCGAAATCACAACCACGCTCATGGCGGCAATTCAAT
TCGCACTTCGACTTAGAGACTGCTCTAGAGCACACAACGTTCGTGCACGA
ACGTGACTCATTATACCGCCGCATCGTCCAGGTACCGAAAGGGCGATGCG
ATCAAGTGGGCTGGGCGCGAATGGTACGAAATGCACGAGGAAATCATGAT
CGTTGCCTCCGAAGCCGTGCTCCCCCTCGGGATCACCGCCGTGTTTGCTT
CCAGGGGTAGGACCTCGGAAGCACACGCACACTGGGGCTACTACATGATC
GCGGCGGTCGCATTGCAGATCTTCACGGGTTGGATGAGGACCAAGGGGTT
AGAGGCCAAACACTCGAACTTTTCCTTGCTTCACAGGGTGAGATGAGCAA
GACATGGTGGTTCTCCGCAAGACTTGTAAAACATTGTTCGAGTCCGCACG
CCGACAACGTCCAGACTGTTGTGTTAGCCTGCACTGGTAGGTATCATGGC
TTTTGCGGGCGAAAGGTGTTGTGTTTGGGGCTAGCGCCGTTCGCTTCGGC
CGGTGCTTGTAGTCCGGAACGCCGTCGCCGCAATGCTTGAAGATACGCTG
CTTTCAACTGAAGCAGCAAGACCAAGGGACGGGAGTCTCGAACGAGTGTT
TGCTACCATTCAAGAAGGGATAGGATGGCACGTTAGAGGTGGTGGGTAAG
CAGAAACCATGTTCTAACGACCTCCTGGTGGAACCCCTTTGCTCAACAGT
TCAACAAGCACTTCCACATCTGGGCTGGACGGTTCGCATACGCAGCCGGC
CTAGTTCAGTGCTACCGAGGGCTGGAGCTCGTGTCCTCGGACGATGAGCT
CTTATTCTCTGCTGGTGATGGCTTAGACCTAGAGGTGAAGCCGCGGTAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1588:8904..10152+

>mRNA_Ecto-sp13_S_contig1588.4316.1 ID=mRNA_Ecto-sp13_S_contig1588.4316.1|Name=mRNA_Ecto-sp13_S_contig1588.4316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1588:8904..10152+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCATCGCACCGTGGGGCATCTACTACGCGAGGGGTAGGACCTCGGA
AGCACACGCACACTGGGGCTACTACATGATCGCGGCGGTCGCATTGCAGA
TCTTCACGGGTTGGATGAGGACCAAGGGGTTAGAGGCCAAACACTCGAAC
TTTTCCTTGCTTCACAGGTTCAACAAGCACTTCCACATCTGGGCTGGACG
GTTCGCATACGCAGCCGGCCTAGTTCAGTGCTACCGAGGGCTGGAGCTCG
TGTCCTCGGACGATGAGCTCTTATTCTCTGCTGGTGATGGCTTAGACCTA
GAGGTGAAGCCGCGGTAG