prot_Ecto-sp13_S_contig15874.4314.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15874.4314.1
Unique Nameprot_Ecto-sp13_S_contig15874.4314.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length277
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15874.4314.1 vs. uniprot
Match: A0A6H5KYC8_9PHAE (RNase III domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYC8_9PHAE)

HSP 1 Score: 389 bits (998), Expect = 1.790e-130
Identity = 230/276 (83.33%), Postives = 238/276 (86.23%), Query Frame = 0 
Query:    1 QVVREFDGRLREFQGNVLQGGALSFSSRAFAGAFGEDEARFFSAVATGCPQRCALLDSVLDGSSMLRKHFDGAPPGAERVVMEVVLVPSELRLQTFTVVEFLLNNVLQPQGGSGEPADNPVLRLIRSAPHGDATIAFLLSIVTETATNLLLNTHQRATIAAGVALAPVAAPLYSPPVPNGLPTTASVYMSHPPPGSPMPPLSPPPLPGPGGGRGPPPHLRLPPPQIHLGLPRRKRSPPHRGGGPWGAAGPRXXXXXXXXXXXXXXXXXGGITRGRC 276
            +VVREFDGRLR+FQGNVL+GGALSFSSRAFAGAFGEDEARFFSAVATGCP+RCALLDSVLDGSSMLRKHFDGAPPGAERVVMEVVLVPSELRLQTFTVVEFLLNNVLQPQGGSGEPADNPVLRLIRSAPHGDATIAFL SIVTETATNLLLN HQRATI+AGVALAP+ APLY PPV                       LSPP LPGPGGGRGPPPHL LP  Q H  LPRRKRS PHRGGGPWG+A   XXXXXXXXXXXXXXXXXGGITRG+C
Sbjct:  251 EVVREFDGRLRDFQGNVLRGGALSFSSRAFAGAFGEDEARFFSAVATGCPERCALLDSVLDGSSMLRKHFDGAPPGAERVVMEVVLVPSELRLQTFTVVEFLLNNVLQPQGGSGEPADNPVLRLIRSAPHGDATIAFLSSIVTETATNLLLNAHQRATISAGVALAPLPAPLYGPPVXXXXXXXXXXXXXX------XXXLSPPHLPGPGGGRGPPPHLGLPSLQNHFSLPRRKRSHPHRGGGPWGSAXXXXXXXXXXXXXXXXXXXXGGITRGKC 520
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15874.4314.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYC8_9PHAE1.790e-13083.33RNase III domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15874contigEcto-sp13_S_contig15874:2442..3607 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15874.4314.1mRNA_Ecto-sp13_S_contig15874.4314.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15874 2442..3607 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15874.4314.1 ID=prot_Ecto-sp13_S_contig15874.4314.1|Name=mRNA_Ecto-sp13_S_contig15874.4314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=277bp
QVVREFDGRLREFQGNVLQGGALSFSSRAFAGAFGEDEARFFSAVATGCP
QRCALLDSVLDGSSMLRKHFDGAPPGAERVVMEVVLVPSELRLQTFTVVE
FLLNNVLQPQGGSGEPADNPVLRLIRSAPHGDATIAFLLSIVTETATNLL
LNTHQRATIAAGVALAPVAAPLYSPPVPNGLPTTASVYMSHPPPGSPMPP
LSPPPLPGPGGGRGPPPHLRLPPPQIHLGLPRRKRSPPHRGGGPWGAAGP
RGRGGRLGRRGGRGGRGGGGITRGRC*
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