mRNA_Ecto-sp13_S_contig1587.4311.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1587.4311.1
Unique NamemRNA_Ecto-sp13_S_contig1587.4311.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1587.4311.1 vs. uniprot
Match: D8LJW0_ECTSI (ARL3, ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJW0_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 4.600e-60
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    1 TQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLAGIPVLIFANKQDLLSALSSDEVS 279
            TQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLAGIPVLIFANKQDLLSALSSDE+S
Sbjct:   47 TQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLAGIPVLIFANKQDLLSALSSDEIS 139
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BLAST of mRNA_Ecto-sp13_S_contig1587.4311.1 vs. uniprot
Match: A0A835ZEJ4_9STRA (ARL3, ARF-like ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ4_9STRA)

HSP 1 Score: 170 bits (430), Expect = 5.290e-52
Identity = 77/93 (82.80%), Postives = 90/93 (96.77%), Query Frame = 1 
Query:    1 TQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLAGIPVLIFANKQDLLSALSSDEVS 279
            TQGFNIKSLMH++FKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSAD+RRM+ETG ELGQLLEE+KL+ +PVLI+ANKQDL+SA++ DE++
Sbjct:   47 TQGFNIKSLMHDEFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADKRRMEETGEELGQLLEEDKLSEVPVLIYANKQDLMSAMAPDEIT 139
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BLAST of mRNA_Ecto-sp13_S_contig1587.4311.1 vs. uniprot
Match: A0A7R9YCL1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCL1_9STRA)

HSP 1 Score: 170 bits (430), Expect = 6.160e-52
Identity = 77/93 (82.80%), Postives = 89/93 (95.70%), Query Frame = 1 
Query:    1 TQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLAGIPVLIFANKQDLLSALSSDEVS 279
            TQGFNIKSLMH +FKLNVWDIGGQKSIRPYWRNYFDQTDAL+YVIDSADRRR++ETGVELGQLL+E+KL G+PVLIFANKQDL++A S +E++
Sbjct:   47 TQGFNIKSLMHAEFKLNVWDIGGQKSIRPYWRNYFDQTDALVYVIDSADRRRLEETGVELGQLLQEDKLLGVPVLIFANKQDLINAASDEELT 139
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BLAST of mRNA_Ecto-sp13_S_contig1587.4311.1 vs. uniprot
Match: A0A7S3HPP9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPP9_9STRA)

HSP 1 Score: 166 bits (421), Expect = 9.940e-51
Identity = 77/95 (81.05%), Postives = 89/95 (93.68%), Query Frame = 1 
Query:    1 TQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLAGIPVLIFANKQDLLSALSSDEVSAK 285
            TQGFNIKSLMH+ FKLNVWDIGGQKSIRPYWRNY+DQTDALIYVIDSADRRRM+ETGVEL QLL+EEKLA +P+LI ANKQDL++AL+  E++A+
Sbjct:   47 TQGFNIKSLMHDGFKLNVWDIGGQKSIRPYWRNYYDQTDALIYVIDSADRRRMEETGVELQQLLDEEKLANVPLLIMANKQDLMNALTPGEITAE 141
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BLAST of mRNA_Ecto-sp13_S_contig1587.4311.1 vs. uniprot
Match: A0A7S0LYW6_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LYW6_9CRYP)

HSP 1 Score: 166 bits (421), Expect = 1.120e-50
Identity = 76/93 (81.72%), Postives = 88/93 (94.62%), Query Frame = 1 
Query:    1 TQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLAGIPVLIFANKQDLLSALSSDEVS 279
            TQGFNIKS++HE FKLNVWDIGGQKSIRPYWRNYFDQTDA++YVID ADRRR+DETGVEL  LLEEEKLAG+PVLIFANK+DL++A+S DE++
Sbjct:   53 TQGFNIKSVVHEGFKLNVWDIGGQKSIRPYWRNYFDQTDAMVYVIDCADRRRIDETGVELQALLEEEKLAGVPVLIFANKKDLMNAMSPDELT 145
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BLAST of mRNA_Ecto-sp13_S_contig1587.4311.1 vs. uniprot
Match: L1JN43_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JN43_GUITC)

HSP 1 Score: 165 bits (417), Expect = 3.790e-50
Identity = 74/93 (79.57%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:    1 TQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLAGIPVLIFANKQDLLSALSSDEVS 279
            TQGFNIKS++HE FKLNVWDIGGQK+IRPYWRNYFDQTDAL++VID +D RRMDETGVEL QLL+EEKLAG+P+LIFANKQDL++A+  DEV+
Sbjct:   47 TQGFNIKSVIHEGFKLNVWDIGGQKTIRPYWRNYFDQTDALVFVIDCSDHRRMDETGVELNQLLDEEKLAGVPLLIFANKQDLMNAMGPDEVT 139
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BLAST of mRNA_Ecto-sp13_S_contig1587.4311.1 vs. uniprot
Match: A0A7S0MCU9_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MCU9_9CRYP)

HSP 1 Score: 164 bits (415), Expect = 7.630e-50
Identity = 76/93 (81.72%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:    1 TQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLAGIPVLIFANKQDLLSALSSDEVS 279
            TQGFNIKS++HE FKLNVWDIGGQK+IRPYWRNYFDQTDAL+YVID AD RRMDET VEL QLLEEEKL G+PVLIFANKQDL +A+S D+V+
Sbjct:   47 TQGFNIKSVVHEGFKLNVWDIGGQKTIRPYWRNYFDQTDALVYVIDCADPRRMDETSVELSQLLEEEKLKGVPVLIFANKQDLANAMSPDQVT 139
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BLAST of mRNA_Ecto-sp13_S_contig1587.4311.1 vs. uniprot
Match: A0A7S0YMS3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YMS3_9CRYP)

HSP 1 Score: 164 bits (414), Expect = 1.080e-49
Identity = 73/93 (78.49%), Postives = 88/93 (94.62%), Query Frame = 1 
Query:    1 TQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLAGIPVLIFANKQDLLSALSSDEVS 279
            TQGFNIKS++H+ FKLNVWDIGGQK+IRPYWRNYFDQTDAL+YVID +DRRRMDETGVEL  LLEEE+LAG+P+L+FANKQDLL+A++ D+V+
Sbjct:   47 TQGFNIKSVIHDGFKLNVWDIGGQKTIRPYWRNYFDQTDALVYVIDCSDRRRMDETGVELNTLLEEEQLAGVPLLLFANKQDLLNAMAPDDVT 139
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BLAST of mRNA_Ecto-sp13_S_contig1587.4311.1 vs. uniprot
Match: A0A7J7PXL4_9CHLO (ARF-like GTPase n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A7J7PXL4_9CHLO)

HSP 1 Score: 162 bits (411), Expect = 2.910e-49
Identity = 74/93 (79.57%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:    1 TQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLAGIPVLIFANKQDLLSALSSDEVS 279
            TQGFNIKSLMH+ FKLNVWDIGGQKSIRPYWRN FD TDAL+YVIDSADR+R+DE GVEL QLLEEEK+ G+PVL+ ANKQDLL+ALS+D+++
Sbjct:   47 TQGFNIKSLMHDGFKLNVWDIGGQKSIRPYWRNNFDSTDALVYVIDSADRKRIDECGVELAQLLEEEKMNGVPVLVLANKQDLLAALSADDIA 139
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BLAST of mRNA_Ecto-sp13_S_contig1587.4311.1 vs. uniprot
Match: A0A5B8ML01_9CHLO (ADP-ribosylation factor-like GTPase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8ML01_9CHLO)

HSP 1 Score: 157 bits (397), Expect = 4.410e-47
Identity = 69/93 (74.19%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:    1 TQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLAGIPVLIFANKQDLLSALSSDEVS 279
            TQGFNIKSL H+ FKLNVWDIGGQK+IRPYWRNYF+QTDA++YVIDSADR+R++ETG+EL  LLEE+KL+G+PV++ ANKQDL++ALS +EV+
Sbjct:   47 TQGFNIKSLNHDGFKLNVWDIGGQKAIRPYWRNYFEQTDAMVYVIDSADRKRIEETGLELADLLEEDKLSGVPVIVLANKQDLVTALSPNEVA 139
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1587.4311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJW0_ECTSI4.600e-6098.92ARL3, ARF-like Ras superfamily GTPase n=2 Tax=Ecto... [more]
A0A835ZEJ4_9STRA5.290e-5282.80ARL3, ARF-like ras superfamily GTPase n=1 Tax=Trib... [more]
A0A7R9YCL1_9STRA6.160e-5282.80Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3HPP9_9STRA9.940e-5181.05Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S0LYW6_9CRYP1.120e-5081.72Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
L1JN43_GUITC3.790e-5079.57Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S0MCU9_9CRYP7.630e-5081.72Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S0YMS3_9CRYP1.080e-4978.49Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7J7PXL4_9CHLO2.910e-4979.57ARF-like GTPase n=2 Tax=Scenedesmaceae TaxID=3086 ... [more]
A0A5B8ML01_9CHLO4.410e-4774.19ADP-ribosylation factor-like GTPase n=1 Tax=Chloro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1587contigEcto-sp13_S_contig1587:12751..13685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score173.3
Seed ortholog evalue4.9e-41
Seed eggNOG ortholog2880.D8LJW0
Preferred nameARL3
Model size291
KEGG koko:K07944,ko:K07977,ko:K11278
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000166,GO:0000278,GO:0000281,GO:0000910,GO:0001655,GO:0001763,GO:0001822,GO:0001882,GO:0001883,GO:0002009,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0005881,GO:0005929,GO:0005930,GO:0006810,GO:0006892,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007264,GO:0007275,GO:0007399,GO:0007424,GO:0008017,GO:0008092,GO:0008150,GO:0009653,GO:0009888,GO:0009987,GO:0010970,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0022008,GO:0022402,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030496,GO:0030705,GO:0031090,GO:0031503,GO:0031984,GO:0032391,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032838,GO:0035146,GO:0035147,GO:0035239,GO:0035295,GO:0035556,GO:0035639,GO:0035869,GO:0036064,GO:0036094,GO:0042073,GO:0042461,GO:0042995,GO:0043005,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0046530,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051716,GO:0060271,GO:0060429,GO:0060446,GO:0060541,GO:0060562,GO:0061138,GO:0061640,GO:0065007,GO:0070925,GO:0071840,GO:0072001,GO:0097014,GO:0097159,GO:0097367,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0098588,GO:0098791,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901265,GO:1901363,GO:1903047
Exons2
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0074@2759
Cds size264
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04031
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462838.57718-CDS-Ecto-sp13_S_contig1587:12750..128761681462838.57718-CDS-Ecto-sp13_S_contig1587:12750..12876Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1587 12751..12876 -
1681462838.5887632-CDS-Ecto-sp13_S_contig1587:13520..136581681462838.5887632-CDS-Ecto-sp13_S_contig1587:13520..13658Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1587 13521..13658 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462838.5985851-UTR-Ecto-sp13_S_contig1587:13658..136851681462838.5985851-UTR-Ecto-sp13_S_contig1587:13658..13685Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1587 13659..13685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1587.4311.1prot_Ecto-sp13_S_contig1587.4311.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1587 12751..13658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1587.4311.1

>prot_Ecto-sp13_S_contig1587.4311.1 ID=prot_Ecto-sp13_S_contig1587.4311.1|Name=mRNA_Ecto-sp13_S_contig1587.4311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
MHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVE
LGQLLEEEKLAGIPVLIFANKQDLLSALSSDEVSAKF*
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mRNA from alignment at Ecto-sp13_S_contig1587:12751..13685-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1587.4311.1 ID=mRNA_Ecto-sp13_S_contig1587.4311.1|Name=mRNA_Ecto-sp13_S_contig1587.4311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=935bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1587:12751..13685- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCAGGGCTTTAACATCAAAAGCTTGATGCATGAGGACTTCAAGCTAAA
CGTTTGGGATATCGGAGGGCAGAAGTCCATTCGGCCGTACTGGCGCAACT
ACTTCGACCAGACCGACGCGCTTATCTACGTTATCGACAGCGCTGATAGG
CGACGCATGGACGAGGTGACATATCCCTCCCGAACCACGTCGTTCGACCA
AACCAACGCGCCATGACAACGAGGAAGGACACCGTCACCATACAAGTATC
ACGAAGGGAACAGCCCTTTGTACGAAACACGCACTTGCCTTTCGCTCTTG
TCTCCCAAACTGCTCTGCGTGGACACAAGATCTTGTTCTTGAAGAATTTG
TACCTAACACGCGCGTTTGACGAAGCTACGTTAAGCGTGCGGTTTCACCT
GCGGCGTGATTCTCTCCTGCGTGCTTGGAGCAACCCGTTAGTTAGTCAAA
GGTTTTGAGAATCCCTGGTGTCCTCGCTCGTCCGACCATAGCCCATGCCT
CTGGTTCTACAGGGTGGAGGGCAGCAGCGTACCCCAACGTCATGACTTTT
CCGCTTTGACCACACAATCGTGCGTCACCTTTGAGGAGAGTGTTCCCTGC
GCTCAGGCGAATTCTCGACCAGGGGGGTGGCGATCGTTTGGGAATGATTC
CTGAACAACAACCGAACGCGCAATGGTAACAACAACAACAACAAAATAAC
ACACCACTCACACGCTGGGGCACCCTTCCACTAACTGAGGAACTTCCATC
TTGTCGTGGTGAGTGAACGCCCATGTACAATCACTGGCAACGTGCAAAAC
GCGAAACAGACGGGAGTGGAGTTGGGGCAGCTGCTCGAGGAGGAAAAGCT
TGCCGGTATCCCGGTTCTCATTTTCGCCAACAAGCAAGACCTCCTTAGCG
CCCTTTCTTCGGATGAGGTCAGTGCAAAGTTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1587:12751..13685-

>mRNA_Ecto-sp13_S_contig1587.4311.1 ID=mRNA_Ecto-sp13_S_contig1587.4311.1|Name=mRNA_Ecto-sp13_S_contig1587.4311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1587:12751..13685- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATGAGGACTTCAAGCTAAACGTTTGGGATATCGGAGGGCAGAAGTC
CATTCGGCCGTACTGGCGCAACTACTTCGACCAGACCGACGCGCTTATCT
ACGTTATCGACAGCGCTGATAGGCGACGCATGGACGAGACGGGAGTGGAG
TTGGGGCAGCTGCTCGAGGAGGAAAAGCTTGCCGGTATCCCGGTTCTCAT
TTTCGCCAACAAGCAAGACCTCCTTAGCGCCCTTTCTTCGGATGAGGTCA
GTGCAAAGTTTTAG
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