mRNA_Ecto-sp13_S_contig15854.4306.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15854.4306.1
Unique NamemRNA_Ecto-sp13_S_contig15854.4306.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15854.4306.1 vs. uniprot
Match: D8LSA3_ECTSI (PHD finger protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSA3_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 7.420e-64
Identity = 119/125 (95.20%), Postives = 122/125 (97.60%), Query Frame = 1 
Query:    1 KSRTKKGAPKTRRRARAAEGPVPDGWRTPEIRALEDQINSRIDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXRRQGLLPPREVSATPPSRKRRRSGAEKTDEAESDWLGLSLSERV 375
            KSRTKKGAPKTR +ARA EGPVPDGWRTPEIRALEDQINSRIDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXRRQGL+PPREVSATPPSRKRRRSGAEKTDE +SDWLGLSLSERV
Sbjct:   25 KSRTKKGAPKTRPQARATEGPVPDGWRTPEIRALEDQINSRIDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXRRQGLIPPREVSATPPSRKRRRSGAEKTDEPDSDWLGLSLSERV 149
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BLAST of mRNA_Ecto-sp13_S_contig15854.4306.1 vs. uniprot
Match: A0A6H5L498_9PHAE (Inhibitor of growth protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L498_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 1.660e-61
Identity = 119/124 (95.97%), Postives = 121/124 (97.58%), Query Frame = 1 
Query:    1 KSRTKKGAPKTRRRARAAEGPVPDGWRTPEIRALEDQINSRIDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXRRQGLLPPREVSATPPSRKRRRSGAEKTDEAESDWLGLSLSER 372
            KSRTKKGAPKTR +ARA +GPVPDGWRTPEIRALEDQINSRIDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXRRQGLLPPREVSATPPSRKRRRSGAEKTDE ESDWLGLSLSER
Sbjct:   83 KSRTKKGAPKTRPQARATKGPVPDGWRTPEIRALEDQINSRIDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXRRQGLLPPREVSATPPSRKRRRSGAEKTDEPESDWLGLSLSER 206
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15854.4306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSA3_ECTSI7.420e-6495.20PHD finger protein-related n=1 Tax=Ectocarpus sili... [more]
A0A6H5L498_9PHAE1.660e-6195.97Inhibitor of growth protein n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15854contigEcto-sp13_S_contig15854:1170..2834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size549
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionInhibitor of growth protein, N-terminal
Ec32 orthologEc-12_004260.1
Cds size549
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462838.1224742-CDS-Ecto-sp13_S_contig15854:1169..12741681462838.1224742-CDS-Ecto-sp13_S_contig15854:1169..1274Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15854 1170..1274 +
1681462838.1384485-CDS-Ecto-sp13_S_contig15854:1840..19691681462838.1384485-CDS-Ecto-sp13_S_contig15854:1840..1969Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15854 1841..1969 +
1681462838.146915-CDS-Ecto-sp13_S_contig15854:2519..28341681462838.146915-CDS-Ecto-sp13_S_contig15854:2519..2834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15854 2520..2834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15854.4306.1prot_Ecto-sp13_S_contig15854.4306.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15854 1170..2834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15854.4306.1

>prot_Ecto-sp13_S_contig15854.4306.1 ID=prot_Ecto-sp13_S_contig15854.4306.1|Name=mRNA_Ecto-sp13_S_contig15854.4306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
KSRTKKGAPKTRRRARAAEGPVPDGWRTPEIRALEDQINSRIDLVLRMAD
EKWRLAQHAYDRLDVNIRRLDADLGRMETDLRRQGLLPPREVSATPPSRK
RRRSGAEKTDEAESDWLGLSLSERVSVVEDQGVAYSQEVCAPGHKWGNRR
AMEACTALFRCLSPSERGSAVLLRCCGSTWFSS
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mRNA from alignment at Ecto-sp13_S_contig15854:1170..2834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15854.4306.1 ID=mRNA_Ecto-sp13_S_contig15854.4306.1|Name=mRNA_Ecto-sp13_S_contig15854.4306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1665bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15854:1170..2834+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAATCCCGAACGAAGAAGGGAGCACCGAAGACTCGACGACGGGCACGCGC
CGCCGAAGGTCCGGTGCCGGACGGTTGGCGTACCCCGGAGATCAGGGCGC
TCGAGGTGGGTGTACAAGTAGTCTTGTGGACATATGTATGCATTAAGCGT
GGTACATGAGAGTGTCGATCCCCACCTCCTTTTTCGACAAGACAACACCA
CCTGTGTCTGAAAGGAAGGGGGGGGGTATTCGGGGCGAGGCCGGGCTAGC
TCGGTGTGCGCTGTGTGTCCGCCGGTGTTGATAATCTCTCTCTTCTGTGT
TGGTTGTTTGAAATGCCATGCGATCTTTCGATTGAGTGTCACCATTCGCA
CCTACAGGTGCACACTTGTTGCGCATTTTCGCTTTTGTGTGAGCTACGGT
AGGAGGTAAAACATTTGTCGTACTAGCATTTTGGCCCCAAAGGATGTACT
ATTTTTTTCAGTGCGGGTAGAGGGTGTTCCAGTTTACATAGCCTTGGCTT
AATAAAAGCATCCCCTCATTGTCACCGCAAATCGTCCATCCCTGCCCTAC
AGGCCGTTCCGTGGCTCTCTGGCTGAAATTTCGTCTTGTTGGCAAATGAT
CATGTTGCTTTTTGCCTCACCTTCGTTTTCCGCGTACACCGACGGCTGGC
TGGGTGTGCGTATGCATACAGGACCAAATCAACAGTCGCATCGACCTCGT
ACTCCGCATGGCGGACGAGAAGTGGCGCCTGGCCCAGCACGCCTACGACC
GGCTGGACGTGAACATCCGTCGTCTCGATGCGGACCTTGGTCGTATGGAG
GTACGTGCTGCTGTAGGTGTGCGGCGAATGAAAAGATGGAGCAGGGTAGG
GTGTGTTCGTGAAGGCATTTTTTGTGGCGAGCGTTTTCGTTCTCAAGACC
GTGAGGGAGCTTTGTGAACCATACCGGTAACAGCTGTTGAGTACGCATGC
ATCCGTGAAACGCCACCCTTTACCCCGCGGGGGCGCTGTGTAGTCTCTGC
ATGGTCTGGTGATTCTCTCCCTGGCACCTGCGGCGCTTGTTTTTTTTGGT
TCAGCAGTCGTGAACGCAACCACTACAACAGCGTGCTGTTTTTGTTTTGT
CTGCCGCACCCCGCAGCCAATTATAGCCCACGTGTGTACAGAGCACGTGG
TTGACGTGTGTTTGGCGTTCAACGCGCCTATCCTTGGCAACCTTCACGAG
ACCGTTTTGCGCTATGTCGCTGCACACCAAAGATGCCTGTTACATACGCG
ATCTCCCCCCTTTCGTGTGTGTTCCACATCTAAGCGACCCCCCCCACCGG
CTTCTGCAACCCTTGCTGGTGCTCTCTTTCCTTACTTGGTCGCGTGTCAG
ACGGACCTCCGTCGACAAGGTTTACTACCCCCGCGCGAAGTCTCCGCGAC
CCCGCCGTCGAGGAAACGCCGCCGGTCGGGGGCGGAGAAAACCGACGAAG
CCGAGTCTGACTGGCTGGGCCTCAGCCTTTCGGAACGGGTGAGCGTTGTA
GAAGACCAGGGGGTCGCGTATAGTCAAGAAGTGTGCGCTCCTGGTCACAA
GTGGGGAAACAGAAGAGCGATGGAGGCGTGTACAGCGCTGTTTCGTTGCT
TGTCGCCCTCCGAGCGTGGAAGTGCGGTTCTTCTGCGGTGTTGCGGCTCC
ACGTGGTTTTCTTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15854:1170..2834+

>mRNA_Ecto-sp13_S_contig15854.4306.1 ID=mRNA_Ecto-sp13_S_contig15854.4306.1|Name=mRNA_Ecto-sp13_S_contig15854.4306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15854:1170..2834+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAATCCCGAACGAAGAAGGGAGCACCGAAGACTCGACGACGGGCACGCGC
CGCCGAAGGTCCGGTGCCGGACGGTTGGCGTACCCCGGAGATCAGGGCGC
TCGAGGACCAAATCAACAGTCGCATCGACCTCGTACTCCGCATGGCGGAC
GAGAAGTGGCGCCTGGCCCAGCACGCCTACGACCGGCTGGACGTGAACAT
CCGTCGTCTCGATGCGGACCTTGGTCGTATGGAGACGGACCTCCGTCGAC
AAGGTTTACTACCCCCGCGCGAAGTCTCCGCGACCCCGCCGTCGAGGAAA
CGCCGCCGGTCGGGGGCGGAGAAAACCGACGAAGCCGAGTCTGACTGGCT
GGGCCTCAGCCTTTCGGAACGGGTGAGCGTTGTAGAAGACCAGGGGGTCG
CGTATAGTCAAGAAGTGTGCGCTCCTGGTCACAAGTGGGGAAACAGAAGA
GCGATGGAGGCGTGTACAGCGCTGTTTCGTTGCTTGTCGCCCTCCGAGCG
TGGAAGTGCGGTTCTTCTGCGGTGTTGCGGCTCCACGTGGTTTTCTTCT
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