mRNA_Ecto-sp13_S_contig15847.4301.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15847.4301.1
Unique NamemRNA_Ecto-sp13_S_contig15847.4301.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15847.4301.1 vs. uniprot
Match: A0A6H5JGB4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGB4_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.620e-19
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = -3 
Query:  374 QRPRASTALEEVREEERAPAPPKSQPFLQQDPAPQSFGSSMLQSMTWG 517
            QRPRASTALEEVREEERAPA PK QPFLQQDPAPQ+FGSSMLQSMTWG
Sbjct:   38 QRPRASTALEEVREEERAPAAPKFQPFLQQDPAPQTFGSSMLQSMTWG 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15847.4301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGB4_9PHAE1.620e-1993.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15847contigEcto-sp13_S_contig15847:3073..3591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size519
Hectar predicted targeting categorysignal peptide
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462837.75776-UTR-Ecto-sp13_S_contig15847:3072..31611681462837.75776-UTR-Ecto-sp13_S_contig15847:3072..3161Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15847 3073..3161 +
1681462837.7781374-UTR-Ecto-sp13_S_contig15847:3506..35911681462837.7781374-UTR-Ecto-sp13_S_contig15847:3506..3591Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15847 3507..3591 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462837.7680275-CDS-Ecto-sp13_S_contig15847:3161..35061681462837.7680275-CDS-Ecto-sp13_S_contig15847:3161..3506Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15847 3162..3506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15847.4301.1prot_Ecto-sp13_S_contig15847.4301.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15847 3162..3506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15847.4301.1

>prot_Ecto-sp13_S_contig15847.4301.1 ID=prot_Ecto-sp13_S_contig15847.4301.1|Name=mRNA_Ecto-sp13_S_contig15847.4301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
MIVKVVQLLMLPIVSASLSCYRTHNGDRARSNYDWSPRSPPERDNKENID
RIRVFAQRFPRLLASRRCFVPDADVLVTPPQIQQHVPGTRGRASSPHVMD
CSMLLPKLCGAGSC*
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mRNA from alignment at Ecto-sp13_S_contig15847:3073..3591+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15847.4301.1 ID=mRNA_Ecto-sp13_S_contig15847.4301.1|Name=mRNA_Ecto-sp13_S_contig15847.4301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15847:3073..3591+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCGCGGGTCTCACCTCCGAACATGTAGGTAGAGACATGGAAATATGAA
TTTTAGGCCCTACACACACGTCTTTTTCTCGAAATTAAGATGATTGTGAA
GGTCGTACAACTCCTGATGCTCCCGATAGTCTCGGCTTCGCTGTCTTGCT
ATCGCACGCATAACGGCGACCGTGCCCGTAGCAACTACGACTGGAGCCCC
CGAAGCCCGCCGGAGCGTGACAACAAAGAAAACATAGACCGCATCCGGGT
GTTCGCGCAACGCTTCCCTAGGCTCTTAGCTTCACGCCGATGCTTTGTGC
CAGACGCTGACGTACTCGTCACACCGCCGCAGATACAGCAACACGTTCCG
GGCACCAGAGGCCGTGCTTCCTCACCCCACGTCATGGACTGCAGCATGCT
GCTCCCGAAGCTCTGCGGTGCGGGGTCCTGCTGAAGAAAGGGCTGGGACT
TCGGTGGGGCTGGAGCGCGCTCTTCTTCTCGCACTTCCTCGAGAGCAGTC
GAGGCCCGTGGCCGTTGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15847:3073..3591+

>mRNA_Ecto-sp13_S_contig15847.4301.1 ID=mRNA_Ecto-sp13_S_contig15847.4301.1|Name=mRNA_Ecto-sp13_S_contig15847.4301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15847:3073..3591+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGTGAAGGTCGTACAACTCCTGATGCTCCCGATAGTCTCGGCTTC
GCTGTCTTGCTATCGCACGCATAACGGCGACCGTGCCCGTAGCAACTACG
ACTGGAGCCCCCGAAGCCCGCCGGAGCGTGACAACAAAGAAAACATAGAC
CGCATCCGGGTGTTCGCGCAACGCTTCCCTAGGCTCTTAGCTTCACGCCG
ATGCTTTGTGCCAGACGCTGACGTACTCGTCACACCGCCGCAGATACAGC
AACACGTTCCGGGCACCAGAGGCCGTGCTTCCTCACCCCACGTCATGGAC
TGCAGCATGCTGCTCCCGAAGCTCTGCGGTGCGGGGTCCTGCTGA
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