mRNA_Ecto-sp13_S_contig15831.4296.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15831.4296.1
Unique NamemRNA_Ecto-sp13_S_contig15831.4296.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15831.4296.1 vs. uniprot
Match: D7G2W7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W7_ECTSI)

HSP 1 Score: 349 bits (896), Expect = 7.600e-115
Identity = 194/246 (78.86%), Postives = 199/246 (80.89%), Query Frame = 1 
Query:   16 WQTLQCILLLNIVISILLDAFQMVQKRNSVVAADTLWQTVMTTLGRWRIRLTHVGFALVHRCSSRTRRSSPRVSSXXXXXAGTTVVKNPMHDRHGGWKLRRXXXXXXXXXXXXXXXXXXXXXXXXXVAGLPVAPPGITGPSSRSAPSLPMSDKRKVSSKNRGGGATNKGGLTGGQRLAMSHRHYELRAAVEVLRRSPLPEAAVWRKMRQIIEARLGWVSEGVGNRGKPLQPGAAWGRSQSRRFSKR 753
            +QTLQCILLLNIVISILLDAFQMVQKRNSVVAADTLWQTVMTTLGRWRIRLTHVGFALV RC S TRRSSPR SS     AGTTVVKNPMHDRHGG KLR+                          AG+PVAPPGITG SSR  P LP SDKRKVSSKNRGGGAT +GGLT GQRLAMSHRHY+LR AVEVLRRSPLPEAAVWRKMRQII ARLGWVSEG GN GKPLQPGAAWGRSQSRRFSKR
Sbjct:  332 YQTLQCILLLNIVISILLDAFQMVQKRNSVVAADTLWQTVMTTLGRWRIRLTHVGFALVGRCPSVTRRSSPRGSSVGDD-AGTTVVKNPMHDRHGGRKLRQRHQHTAPTAGGTSAAAVAA------AAGVPVAPPGITGSSSRGVPLLPSSDKRKVSSKNRGGGATKRGGLTRGQRLAMSHRHYDLRTAVEVLRRSPLPEAAVWRKMRQIIGARLGWVSEGAGNTGKPLQPGAAWGRSQSRRFSKR 570
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BLAST of mRNA_Ecto-sp13_S_contig15831.4296.1 vs. uniprot
Match: A0A6H5KPV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV8_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 4.180e-92
Identity = 176/246 (71.54%), Postives = 182/246 (73.98%), Query Frame = 1 
Query:   16 WQTLQCILLLNIVISILLDAFQMVQKRNSVVAADTLWQTVMTTLGRWRIRLTHVGFA--------------------------------LVHRCSSRTRRSSPRVSSXXXXXAGTTVVKNPMHDRHGGWKLRRXXXXXXXXXXXXXXXXXXXXXXXXXVAGLPVAPPGITGPSSRSAPSLPMSDKRKVSSKNRGGGATNKGGLTGGQRLAMSHRHYELRAAVEVLRRSPLPEAAVWRKMRQIIEAR 657
            +QTLQCILLLNIVISILLDAFQMVQ R+SVVAADTLWQTVMTTLGRWRIRLTH+GFA                                LVHRCSS TRRSS R        AGTTVV+NPMHDRHGGWKLRR        XXXXXXXXXXX      V G+PVAPPGITG SSR APSLP SDKRKVSSKNRGGGAT +GGLTGGQRLAMSHRHYEL AAVEVLRRSPLPEAAVWRKMRQII AR
Sbjct:   16 YQTLQCILLLNIVISILLDAFQMVQTRDSVVAADTLWQTVMTTLGRWRIRLTHMGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVHRCSSGTRRSSDRGDD-----AGTTVVRNPMHDRHGGWKLRRRHQRTAPTXXXXXXXXXXX------VTGVPVAPPGITGSSSRGAPSLPTSDKRKVSSKNRGGGATRRGGLTGGQRLAMSHRHYELHAAVEVLRRSPLPEAAVWRKMRQIIGAR 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15831.4296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2W7_ECTSI7.600e-11578.86Transient Receptor Potential Channel n=1 Tax=Ectoc... [more]
A0A6H5KPV8_9PHAE4.180e-9271.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15831contigEcto-sp13_S_contig15831:1135..3583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size756
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionTransient Receptor Potential Channel
Ec32 orthologEc-09_004640.2
Cds size756
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462837.2901838-CDS-Ecto-sp13_S_contig15831:1134..12341681462837.2901838-CDS-Ecto-sp13_S_contig15831:1134..1234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15831 1135..1234 -
1681462837.3009596-CDS-Ecto-sp13_S_contig15831:1850..22821681462837.3009596-CDS-Ecto-sp13_S_contig15831:1850..2282Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15831 1851..2282 -
1681462837.3171835-CDS-Ecto-sp13_S_contig15831:3038..31811681462837.3171835-CDS-Ecto-sp13_S_contig15831:3038..3181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15831 3039..3181 -
1681462837.327618-CDS-Ecto-sp13_S_contig15831:3502..35831681462837.327618-CDS-Ecto-sp13_S_contig15831:3502..3583Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15831 3503..3583 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15831.4296.1prot_Ecto-sp13_S_contig15831.4296.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15831 1135..3583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15831.4296.1

>prot_Ecto-sp13_S_contig15831.4296.1 ID=prot_Ecto-sp13_S_contig15831.4296.1|Name=mRNA_Ecto-sp13_S_contig15831.4296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=252bp
LLFCLWQTLQCILLLNIVISILLDAFQMVQKRNSVVAADTLWQTVMTTLG
RWRIRLTHVGFALVHRCSSRTRRSSPRVSSSDDDDAGTTVVKNPMHDRHG
GWKLRRRHQHQHTASTGGGTSAAAAAAAAAAVAGLPVAPPGITGPSSRSA
PSLPMSDKRKVSSKNRGGGATNKGGLTGGQRLAMSHRHYELRAAVEVLRR
SPLPEAAVWRKMRQIIEARLGWVSEGVGNRGKPLQPGAAWGRSQSRRFSK
R*
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mRNA from alignment at Ecto-sp13_S_contig15831:1135..3583-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15831.4296.1 ID=mRNA_Ecto-sp13_S_contig15831.4296.1|Name=mRNA_Ecto-sp13_S_contig15831.4296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2449bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15831:1135..3583- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCTGTTTTGCTTGTGGCAGACGCTGCAGTGCATTCTTCTGCTGAACAT
CGTCATCTCCATCCTGCTCGATGCCTTCCAGGTTCGGTGTTTGATGGAGG
ATGTTTTTTTTTGTCGGTCGTGGCCGGTTTTCAACTGATACTTGACACTT
TTTTTCTTCATACTCTGTCGAAACCGGACAAGATGTCGAAGATGGAGTCG
GAGCCCTTGTCGGAGATGTTGAGATGTTGTCGGAGATAATAATATTCGCC
TCATATGCCCCGAAATACTAATTTTCCCCCCATCTCCCTTTCCTTCCCTT
CCCACCTCTCCCTCCCTCCCTCCCCCCCCCCCCCCCTCTCGCCCTCTGGC
AACTTTTTACGGTATTGACAACGATGATGACGACTTTGATGGATGATGCC
AGATGGTCCAAAAGCGTAACTCGGTGGTAGCGGCGGACACTCTTTGGCAG
ACGGTGATGACTACATTGGGGCGATGGCGGATTCGTCTGACGCACGTGGG
CTTTGCCTTGGTCCACCGATGTTCGTCGCGCACCAGACGTTCCAGGTGCT
GTTGTTGTTGTTGTTGTTGCTGTTGTTGTTGCTGTTGTTGTTGTTGCTAC
CGCTGCTGCCGCTACTGCTGTTGCCGCTATTGCTGCTGCCGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGATGCTGAT
GCTGCTGTTGTTGCTGTCAGAGGTTGTTGTTATGGTGGTGGTGCTTGTTG
ATGATGTTGTTGTTGTTGGTCTAGTGCATGCTTTTTGTTATGGGACGGCA
TGGATGGTCGTTTGGTGGAACAGATGCGGACTGTTCAGGGCAAAAGTGAC
GAACGGCGTGGTGGGATTAACGCTGGTGAAGGAAAGCACGTTTACTCCCG
AAACATTGCAGTACGGCAAAGTATGGACACACAATCAAACAAGTTTGAAG
TCGGCTTTTGACGCTCTCCCGGCTGCTGCGGTCAGCGTTTCTCCCACCAC
CTTACTGTACAACGAAACCACGAGGATACTGGTCCAGTCTGCAGAAACAT
GTGCATGTTTTATGTCATGTCCTATTCTTCTCCCGGTAACCCAGTCGACC
ACAGCAAAAGCTATGCACCTGGCACCCTTCGCGTTGCTGTACAACACCAG
TACCCGCATCAAGTCGTTACACGCCCGTGCAGGGCACTTTTTTGGCAACG
AGAACAACGCGCATGGTCAGAGGCCGCCACACGTAACTGGCAATGAAAGG
TAGCAAGTAATCCCGCTACCCCCCCCCTTCTCGTCCTCTCCCCCACACCA
GTCCACGGGTCAGCAGCAGTGACGATGATGATGCCGGCACGACGGTAGTC
AAGAACCCTATGCATGACAGACACGGCGGGTGGAAGCTAAGGCGACGACA
TCAACATCAACACACAGCAAGTACAGGTGGTGGTACTAGCGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCCGTGGCTGGTTTGCCTGTTGCACCGCCGGGG
ATAACCGGGCCGAGTTCCCGTAGTGCTCCGTCGCTTCCAATGTCCGATAA
GCGGAAGGTCAGCTCGAAGAACCGCGGCGGCGGCGCAACAAATAAAGGGG
GGCTTACTGGCGGACAGCGTTTGGCGATGTCCCACCGGCACTACGAGCTT
CGTGCAGCGGTGGAGGTGTTGAGGCGGTCACCCTTGCCGGAGGCCGCGGT
GTGGAGGAAAATGAGGCAGATCATCGAGGCAAGGTAATGGAATGGGATGG
GATGGGATGAGATGAGATGGAATTGAATTCCATGCTTAATGGAATCGGAT
GGGATTGAAGGATTCAAATGGAATGGTTTTGAACGGAATCGGATGGAGGA
AAATGAGGCAGATCGTCGGGGCAAGGTAATGGGATAGCAAGTGCAACGAG
TTTTGTATTAACACACCTACCTCTCGATGTTTCTGTTTGAGGTATTAGCC
GGGGTCACATAGTAGGAAGGTCACACAGATAGATGGGAATAGAACACTAT
GGTGTAGTAATGGAATGACATTGAATGAGATGGGATGGAATTGAACGGTC
GGAAATGGAATATGGAGTGTAGGCAAGGGCCGATGGCTGAGGTGGATGGG
GTTGTGTGTGCATAACTAGGTATGTACTCGGTTCGAACTCCAACGGATGA
CCTTACGTGAGTCAACTAGCACACACAGCTACTATCCGCGGGCGACTGCG
GCTGTTTGTCCCTGCAATGCAACCCGCTCGTGGTTTCTAGTCAACCAACC
CGTCATCAACCCCCTCTCGATCACGTCTGGTCAATTTTTAACGCTAGAGG
CACGCAAAACATGAGTACGCCCCCTCCGCTCCTGTTCCGGGCTGTGCAGG
TTAGGGTGGGTGTCTGAAGGAGTGGGCAACAGGGGGAAGCCACTGCAGCC
GGGGGCGGCGTGGGGAAGAAGCCAAAGCCGCAGATTTAGCAAACGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15831:1135..3583-

>mRNA_Ecto-sp13_S_contig15831.4296.1 ID=mRNA_Ecto-sp13_S_contig15831.4296.1|Name=mRNA_Ecto-sp13_S_contig15831.4296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=756bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15831:1135..3583- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCTGTTTTGCTTGTGGCAGACGCTGCAGTGCATTCTTCTGCTGAACAT
CGTCATCTCCATCCTGCTCGATGCCTTCCAGATGGTCCAAAAGCGTAACT
CGGTGGTAGCGGCGGACACTCTTTGGCAGACGGTGATGACTACATTGGGG
CGATGGCGGATTCGTCTGACGCACGTGGGCTTTGCCTTGGTCCACCGATG
TTCGTCGCGCACCAGACGTTCCAGTCCACGGGTCAGCAGCAGTGACGATG
ATGATGCCGGCACGACGGTAGTCAAGAACCCTATGCATGACAGACACGGC
GGGTGGAAGCTAAGGCGACGACATCAACATCAACACACAGCAAGTACAGG
TGGTGGTACTAGCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGTGGCTG
GTTTGCCTGTTGCACCGCCGGGGATAACCGGGCCGAGTTCCCGTAGTGCT
CCGTCGCTTCCAATGTCCGATAAGCGGAAGGTCAGCTCGAAGAACCGCGG
CGGCGGCGCAACAAATAAAGGGGGGCTTACTGGCGGACAGCGTTTGGCGA
TGTCCCACCGGCACTACGAGCTTCGTGCAGCGGTGGAGGTGTTGAGGCGG
TCACCCTTGCCGGAGGCCGCGGTGTGGAGGAAAATGAGGCAGATCATCGA
GGCAAGGTTAGGGTGGGTGTCTGAAGGAGTGGGCAACAGGGGGAAGCCAC
TGCAGCCGGGGGCGGCGTGGGGAAGAAGCCAAAGCCGCAGATTTAGCAAA
CGTTGA
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