prot_Ecto-sp13_S_contig1583.4294.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1583.4294.1
Unique Name	prot_Ecto-sp13_S_contig1583.4294.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	199

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1583.4294.1 vs. uniprot
Match: D8LI70_ECTSI (Nuclear cap-binding protein subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI70_ECTSI)

HSP 1 Score: 362 bits (928), Expect = 6.270e-126
Identity = 193/198 (97.47%), Postives = 193/198 (97.47%), Query Frame = 0

Query:    1 MTEMLDFGWSERPYWDRKNWSSLEAYKEALKMSSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQVRDEARATNDPARGGMGGLALAEMNGQLAPQGGGGXXDYYGHXXXXXXXXXXXXRRANKRPRVDWDARDRR 198
            MTEMLDFGWSERPYWDRKNWSSLEAYKEALK SSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQVRDEARATNDPARGGMGGLALAEMNGQLAPQGGGG  DYYGHXXXXXXXXXXX  RANKRPRVDWDARDRR
Sbjct:    1 MTEMLDFGWSERPYWDRKNWSSLEAYKEALKKSSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQVRDEARATNDPARGGMGGLALAEMNGQLAPQGGGGGGDYYGHXXXXXXXXXXX--RANKRPRVDWDARDRR 196

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BLAST of mRNA_Ecto-sp13_S_contig1583.4294.1 vs. uniprot
Match: F0WMQ1_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMQ1_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.460e-49
Identity = 81/137 (59.12%), Postives = 103/137 (75.18%), Query Frame = 0

Query:   10 SERPYWDRKNWSSLEAYKEALKMSSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQVRDEARATN--DPARGGMG 144
            ++R YWDRK + SLE  + A+K SSTLY+GNLSFYT E+Q+  LF +VG ++RVIMGLDR KK+PCGFCFVEY +H++ L     L GT LD R+I+  +D GF QGRQ+GRG SGGQVRD+ R+ +  DP RGG G
Sbjct:   19 NQRKYWDRKTYKSLEEQQSAIKQSSTLYIGNLSFYTSENQLCELFSRVGTIKRVIMGLDRFKKTPCGFCFVEYYSHAEALACSNFLSGTKLDNRVIRCEMDGGFTQGRQFGRGFSGGQVRDDRRSKDEYDPGRGGFG 155

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BLAST of mRNA_Ecto-sp13_S_contig1583.4294.1 vs. uniprot
Match: A0A024GN20_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GN20_9STRA)

HSP 1 Score: 169 bits (427), Expect = 4.520e-49
Identity = 81/136 (59.56%), Postives = 102/136 (75.00%), Query Frame = 0

Query:   11 ERPYWDRKNWSSLEAYKEALKMSSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQVRDEARATN--DPARGGMG 144
            +R YWDRK + SLE  + A+K SSTLY+GNLSFYT E+Q+  LF +VG ++RVIMGLDR KK+PCGFCFVEY +H++ L     L GT LD R+I+  +D GF QGRQ+GRG SGGQVRD+ R+ +  DP RGG G
Sbjct:   20 QRKYWDRKTYKSLEEQQSAIKQSSTLYIGNLSFYTSENQLCELFSRVGTIKRVIMGLDRFKKTPCGFCFVEYYSHAEALACSNFLTGTKLDNRVIRCEMDGGFTQGRQFGRGFSGGQVRDDRRSKDEYDPGRGGFG 155

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BLAST of mRNA_Ecto-sp13_S_contig1583.4294.1 vs. uniprot
Match: A0A067BW87_SAPPC (Nuclear cap-binding protein subunit 2 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BW87_SAPPC)

HSP 1 Score: 164 bits (416), Expect = 1.450e-47
Identity = 81/139 (58.27%), Postives = 103/139 (74.10%), Query Frame = 0

Query:    8 GWSERPYWDRKNWSSLEAYKEALKMSSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQVRDEARATND--PARGGMG 144
            G  ++ YWDR+ ++SLE  +EA+K SSTLYVGNLSF+T E+QIY LF  VG VR VIMGLDR+KK+PCGFCFVEY N          + GT LD+R+I+  +D GF++GRQYGRG +GGQVRD+ R+ +D  P RGG G
Sbjct:   12 GPKKKEYWDRQTYTSLEEQQEAMKQSSTLYVGNLSFFTSETQIYELFSVVGPVRAVIMGLDRLKKTPCGFCFVEYFNKEHAQACSNFVSGTKLDQRVIRCELDGGFREGRQYGRGTTGGQVRDDRRSKDDYDPGRGGYG 150

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BLAST of mRNA_Ecto-sp13_S_contig1583.4294.1 vs. uniprot
Match: A0A1W0A133_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A133_9STRA)

HSP 1 Score: 164 bits (414), Expect = 2.110e-47
Identity = 80/139 (57.55%), Postives = 102/139 (73.38%), Query Frame = 0

Query:    8 GWSERPYWDRKNWSSLEAYKEALKMSSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQVRDEARATND--PARGGMG 144
            G  ++ YWDR+ ++SLE  +EA+K SSTLYVGNLSF+T E+QIY LF  VG VR VIMGLDR+KK+PCGFCFVEY N          +  T LD+R+I+  +D GF++GRQYGRG +GGQVRD+ R+ +D  P RGG G
Sbjct:   12 GPKKKEYWDRQTYASLEEQQEAMKQSSTLYVGNLSFFTSETQIYELFSVVGPVRAVIMGLDRIKKTPCGFCFVEYFNKDHAQACANFISSTKLDQRVIRCELDGGFREGRQYGRGTTGGQVRDDRRSKDDYDPGRGGYG 150

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BLAST of mRNA_Ecto-sp13_S_contig1583.4294.1 vs. uniprot
Match: A0A8K1CR96_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR96_PYTOL)

HSP 1 Score: 162 bits (410), Expect = 1.010e-46
Identity = 79/144 (54.86%), Postives = 103/144 (71.53%), Query Frame = 0

Query:    3 EMLDFGWSERPYWDRKNWSSLEAYKEALKMSSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQVRDEARATND--PARGGMG 144
            E +  G  +R YWDRK ++S E  + A+  S+TLY+GNLSF+T E QIY LF +VG V+RVIMGLDR KK+PCGFCFVEY  H + +     ++ T LD R+I+  +D GFK+GRQ+GRG SGGQVRD+ R+ +D  P RGG G
Sbjct:   13 ERVARGQQQRKYWDRKTYTSYEEQQRAIASSATLYIGNLSFFTSEVQIYELFSRVGNVKRVIMGLDRFKKTPCGFCFVEYNTHEEAVACANFVNETKLDNRVIRCEMDGGFKEGRQFGRGASGGQVRDDRRSRDDYDPGRGGYG 156

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BLAST of mRNA_Ecto-sp13_S_contig1583.4294.1 vs. uniprot
Match: A0A225UYF8_9STRA (Nuclear cap-binding protein subunit 2 n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A225UYF8_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.130e-46
Identity = 81/144 (56.25%), Postives = 104/144 (72.22%), Query Frame = 0

Query:    3 EMLDFGWSERPYWDRKNWSSLEAYKEALKMSSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQVRDEARATND--PARGGMG 144
            + L  G S+R YWDRK +SS    + A+  SSTLYVGNLSF+T E+QIY LF +VG V+RVIMGLDR KK+PCGFCFVEY+ HS+       L  T LD R+++  +D GF++GRQ+GRG+SGGQVRD+ R+ +D    RGG G
Sbjct:   13 QRLARGPSQRQYWDRKTFSSFAEQQRAMTRSSTLYVGNLSFFTSEAQIYELFSRVGHVKRVIMGLDRFKKTPCGFCFVEYSTHSEAEACAQFLSETKLDNRVVRCEMDGGFREGRQFGRGLSGGQVRDDRRSKDDYDAGRGGYG 156

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BLAST of mRNA_Ecto-sp13_S_contig1583.4294.1 vs. uniprot
Match: B6JXD6_SCHJY (Nuclear cap-binding protein subunit 2 n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6JXD6_SCHJY)

HSP 1 Score: 160 bits (405), Expect = 1.300e-46
Identity = 79/132 (59.85%), Postives = 96/132 (72.73%), Query Frame = 0

Query:   13 PYWDRKNWSSLEAYKEALKMSSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQVRDEARATNDPARGGMG 144
            PY  R  WS+  A  E +K S  +YVGNLSFYT E QIYALF + G ++R+IMG+DR  K+PCGFCFVEY  H D L ++  + GTALDERII+  +DPG+++GRQYGRG SGGQVRDE R   DP RGG G
Sbjct:   12 PYILRNGWSN-PAILEKVKESCCVYVGNLSFYTTEDQIYALFSKCGEIKRIIMGIDRFTKTPCGFCFVEYYTHEDALDSLKYVSGTALDERIIRADLDPGYEEGRQYGRGASGGQVRDEIREEFDPGRGGYG 142

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BLAST of mRNA_Ecto-sp13_S_contig1583.4294.1 vs. uniprot
Match: K3W5Q9_GLOUD (Nuclear cap-binding protein subunit 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5Q9_GLOUD)

HSP 1 Score: 161 bits (408), Expect = 2.330e-46
Identity = 78/144 (54.17%), Postives = 105/144 (72.92%), Query Frame = 0

Query:   11 ERPYWDRKNWSSLEAYKEALKMSSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQVRDEARATN--DPARGGMGGLALAEMN 152
            +R YWDRK +SS +  + A+  S+TLY+GNLSF+T E QIY LF +VG V+RVIMGLDR KK+PCGFCFVE++ H + +     +  T LD R+I+  +D GFK+GRQ+GRG+SGGQVRD+ R+ +  DP RGG G   +A+ N
Sbjct:   20 QRNYWDRKTFSSYDEQQRAMARSTTLYIGNLSFFTTEVQIYELFSRVGNVKRVIMGLDRFKKTPCGFCFVEFSTHDEAIACSNFISETKLDNRVIRCEMDGGFKEGRQFGRGLSGGQVRDDRRSKDEYDPGRGGYGRSDVADGN 163

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BLAST of mRNA_Ecto-sp13_S_contig1583.4294.1 vs. uniprot
Match: W2Q5Q2_PHYPN (Nuclear cap-binding protein subunit 2 n=8 Tax=Phytophthora TaxID=4783 RepID=W2Q5Q2_PHYPN)

HSP 1 Score: 161 bits (408), Expect = 2.770e-46
Identity = 80/144 (55.56%), Postives = 105/144 (72.92%), Query Frame = 0

Query:    3 EMLDFGWSERPYWDRKNWSSLEAYKEALKMSSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQVRDEARATND--PARGGMG 144
            + L  G S+R YWDRK +SS    + A++ SSTLYVGNLSF+T E+QIY LF +VG V+RVIMGLDR KK+PCGFCFVEY+ H++       L  T LD R+++  +D GF++GRQ+GRG+SGGQVRD+ R+ +D    RGG G
Sbjct:   13 QRLARGPSQRQYWDRKTFSSFAEQQRAMERSSTLYVGNLSFFTSEAQIYELFSRVGHVKRVIMGLDRFKKTPCGFCFVEYSTHAEAEACAQFLSETKLDNRVVRCEMDGGFREGRQFGRGLSGGQVRDDRRSKDDYDAGRGGYG 156

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1583.4294.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1583.4294.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LI70_ECTSI	6.270e-126	97.47	Nuclear cap-binding protein subunit 2 n=2 Tax=Ecto...	[more]
F0WMQ1_9STRA	2.460e-49	59.12	Nuclear cap-binding protein subunit 2 n=1 Tax=Albu...	[more]
A0A024GN20_9STRA	4.520e-49	59.56	Nuclear cap-binding protein subunit 2 n=1 Tax=Albu...	[more]
A0A067BW87_SAPPC	1.450e-47	58.27	Nuclear cap-binding protein subunit 2 n=2 Tax=Sapr...	[more]
A0A1W0A133_9STRA	2.110e-47	57.55	Nuclear cap-binding protein subunit 2 n=1 Tax=Thra...	[more]
A0A8K1CR96_PYTOL	1.010e-46	54.86	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A225UYF8_9STRA	1.130e-46	56.25	Nuclear cap-binding protein subunit 2 n=2 Tax=Pero...	[more]
B6JXD6_SCHJY	1.300e-46	59.85	Nuclear cap-binding protein subunit 2 n=1 Tax=Schi...	[more]
K3W5Q9_GLOUD	2.330e-46	54.17	Nuclear cap-binding protein subunit 2 n=1 Tax=Glob...	[more]
W2Q5Q2_PHYPN	2.770e-46	55.56	Nuclear cap-binding protein subunit 2 n=8 Tax=Phyt...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 35..108 e-value: 9.6E-18 score: 74.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 36..106 e-value: 1.3E-14 score: 53.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 34..112 score: 14.095
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 11..120 e-value: 9.3E-22 score: 79.3
IPR027157	Nuclear cap-binding protein subunit 2	PANTHER	PTHR18847	20 KD NUCLEAR CAP BINDING PROTEIN	coord: 12..154
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 33..142

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1583	contig	Ecto-sp13_S_contig1583:1485..3556 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1583.4294.1	mRNA_Ecto-sp13_S_contig1583.4294.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1583 963..3559 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1583.4294.1 ID=prot_Ecto-sp13_S_contig1583.4294.1|Name=mRNA_Ecto-sp13_S_contig1583.4294.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=199bp
MTEMLDFGWSERPYWDRKNWSSLEAYKEALKMSSTLYVGNLSFYTQESQI
YALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTAL
DERIIKVGIDPGFKQGRQYGRGMSGGQVRDEARATNDPARGGMGGLALAE
MNGQLAPQGGGGGGDYYGHGGGGGGDYYGGGRRANKRPRVDWDARDRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR027157	NCBP2
IPR035979	RBD_domain_sf