mRNA_Ecto-sp13_S_contig1583.4293.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1583.4293.1
Unique NamemRNA_Ecto-sp13_S_contig1583.4293.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1583.4293.1 vs. uniprot
Match: D8LI71_ECTSI (ARL2, ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI71_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 5.700e-41
Identity = 71/74 (95.95%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:   37 QKLAGASLLVFANKQDLVGALGAAEIAQVLGLESKQFANRHWNIVACSAVTGEGLAQGVDWMVSDIGSRIFMMS 258
            +KLAGASLLVFANKQDLVGALGAAEIAQVLGLESKQFANRHW+IVACSAVTGEGLAQGVDWMVSDIG+RIFMMS
Sbjct:  113 EKLAGASLLVFANKQDLVGALGAAEIAQVLGLESKQFANRHWSIVACSAVTGEGLAQGVDWMVSDIGARIFMMS 186
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BLAST of mRNA_Ecto-sp13_S_contig1583.4293.1 vs. uniprot
Match: A0A662XD50_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XD50_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.770e-30
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:   37 QKLAGASLLVFANKQDLVGALGAAEIAQVLGLESKQFANRHWNIVACSAVTGEGLAQGVDWMVSDIGSRIFMM 255
            QKLAGA+LL+FANKQDL GAL +AEIA  LGL S QF+ RHW+IV+CSAVTGEGL  GVDW+V DI SRIF+M
Sbjct:   89 QKLAGATLLIFANKQDLPGALSSAEIADALGLRSAQFSTRHWSIVSCSAVTGEGLVDGVDWLVGDIASRIFLM 161
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BLAST of mRNA_Ecto-sp13_S_contig1583.4293.1 vs. uniprot
Match: A0A5D6XTH0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTH0_9STRA)

HSP 1 Score: 113 bits (283), Expect = 6.460e-30
Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:   31 TAQKLAGASLLVFANKQDLVGALGAAEIAQVLGLESKQFANRHWNIVACSAVTGEGLAQGVDWMVSDIGSRIFMM 255
            T +KLAGA+LL+FANKQDL GA+ AAEIA +L L S+QFANRHWNIV+CSA TG+GL  GVDW+V DI SRIF+M
Sbjct:  111 TQEKLAGATLLIFANKQDLPGAVAAAEIADILELRSEQFANRHWNIVSCSAFTGDGLVAGVDWLVRDIASRIFLM 185
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BLAST of mRNA_Ecto-sp13_S_contig1583.4293.1 vs. uniprot
Match: A0A7S3YLC0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLC0_HETAK)

HSP 1 Score: 110 bits (275), Expect = 9.370e-30
Identity = 51/74 (68.92%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:   37 QKLAGASLLVFANKQDLVGALGAAEIAQVLGLESKQFANRHWNIVACSAVTGEGLAQGVDWMVSDIGSRIFMMS 258
            +KLAGASLL+FANKQDL GAL + EIA++L L+S++F+ RH NI+ACSAVTGEGLA+GVDW++ DI +RIFMM+
Sbjct:   27 EKLAGASLLIFANKQDLAGALSSEEIAEILELQSEKFSTRHCNIIACSAVTGEGLAEGVDWVIGDISARIFMMT 100
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BLAST of mRNA_Ecto-sp13_S_contig1583.4293.1 vs. uniprot
Match: K3X431_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X431_GLOUD)

HSP 1 Score: 112 bits (281), Expect = 1.300e-29
Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:   31 TAQKLAGASLLVFANKQDLVGALGAAEIAQVLGLESKQFANRHWNIVACSAVTGEGLAQGVDWMVSDIGSRIFMM 255
            T +KLAGA+LL+FANKQDL GAL A+EIA  L L S+QF NRHWNIVACSAVTG GL +G+DW+V+DI SRIF+M
Sbjct:  111 TQEKLAGATLLIFANKQDLPGALTASEIADYLELRSEQFVNRHWNIVACSAVTGAGLLEGIDWLVADIASRIFLM 185
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BLAST of mRNA_Ecto-sp13_S_contig1583.4293.1 vs. uniprot
Match: W2RI03_PHYPN (ADP-ribosylation factor-like protein 2, variant 1 n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RI03_PHYPN)

HSP 1 Score: 110 bits (276), Expect = 3.020e-29
Identity = 50/75 (66.67%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:   31 TAQKLAGASLLVFANKQDLVGALGAAEIAQVLGLESKQFANRHWNIVACSAVTGEGLAQGVDWMVSDIGSRIFMM 255
            T +KLAGA+LL+FANKQDL GAL +AEIA  LGL S QF+ RHW+I++CSAVTG+GL  G+DW+V D+ SRIF+M
Sbjct:   78 TQEKLAGATLLIFANKQDLPGALSSAEIADALGLRSAQFSTRHWSIISCSAVTGDGLVDGIDWLVGDVASRIFLM 152
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BLAST of mRNA_Ecto-sp13_S_contig1583.4293.1 vs. uniprot
Match: H3GA42_PHYRM (Uncharacterized protein n=30 Tax=Oomycota TaxID=4762 RepID=H3GA42_PHYRM)

HSP 1 Score: 111 bits (277), Expect = 5.210e-29
Identity = 51/75 (68.00%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:   31 TAQKLAGASLLVFANKQDLVGALGAAEIAQVLGLESKQFANRHWNIVACSAVTGEGLAQGVDWMVSDIGSRIFMM 255
            T +KLAGA+LL+FANKQDL GAL +AEIA  LGL S QF+ RHW+IV+CSAVTG+GL  G+DW+V D+ SRIF+M
Sbjct:  111 TQEKLAGATLLIFANKQDLPGALSSAEIADALGLRSAQFSTRHWSIVSCSAVTGDGLVDGIDWLVGDVASRIFLM 185
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BLAST of mRNA_Ecto-sp13_S_contig1583.4293.1 vs. uniprot
Match: A0A7S2CN96_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CN96_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.480e-29
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:   37 QKLAGASLLVFANKQDLVGALGAAEIAQVLGLESKQFAN-RHWNIVACSAVTGEGLAQGVDWMVSDIGSRIFMMS 258
            +KLAGASLL+FANKQDL GAL A EIAQVL L S +FA+ RHW+I ACSAVTGEGL  GVDWMV+DI SRIFMMS
Sbjct:  126 EKLAGASLLIFANKQDLAGALTAEEIAQVLDLHSDRFASGRHWSIHACSAVTGEGLVDGVDWMVTDISSRIFMMS 200
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BLAST of mRNA_Ecto-sp13_S_contig1583.4293.1 vs. uniprot
Match: F0WZN0_9STRA (ADPribosylation factor 2 putative n=2 Tax=Albugo TaxID=65356 RepID=F0WZN0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.190e-27
Identity = 49/75 (65.33%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:   31 TAQKLAGASLLVFANKQDLVGALGAAEIAQVLGLESKQFANRHWNIVACSAVTGEGLAQGVDWMVSDIGSRIFMM 255
            T +KLAGAS+L+FANKQDL GAL    IA+VL L+  QF+NRHW IV+CSA++G+GLA+G+DW+V DI SRIF+M
Sbjct:  111 TQEKLAGASILIFANKQDLPGALPVTSIAKVLQLDDTQFSNRHWKIVSCSAISGDGLAEGIDWLVQDIASRIFLM 185
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BLAST of mRNA_Ecto-sp13_S_contig1583.4293.1 vs. uniprot
Match: A0A7S3LJR0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LJR0_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.370e-27
Identity = 53/73 (72.60%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:   37 QKLAGASLLVFANKQDLVGALGAAEIAQVLGLESKQFANRHWNIVACSAVTGEGLAQGVDWMVSDIGSRIFMM 255
            +KLAGASLL+FANKQDLVGAL   +IAQVL L S+ F  RHW I  CSAVTGEGL  G+DWMV DI SRIFMM
Sbjct:  113 EKLAGASLLIFANKQDLVGALTCEQIAQVLELGSEIFTTRHWEIQPCSAVTGEGLVNGIDWMVEDISSRIFMM 185
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1583.4293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI71_ECTSI5.700e-4195.95ARL2, ARF-like Ras superfamily GTPase n=2 Tax=Ecto... [more]
A0A662XD50_9STRA4.770e-3073.97Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A5D6XTH0_9STRA6.460e-3072.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S3YLC0_HETAK9.370e-3068.92Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K3X431_GLOUD1.300e-2972.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W2RI03_PHYPN3.020e-2966.67ADP-ribosylation factor-like protein 2, variant 1 ... [more]
H3GA42_PHYRM5.210e-2968.00Uncharacterized protein n=30 Tax=Oomycota TaxID=47... [more]
A0A7S2CN96_9STRA7.480e-2977.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0WZN0_9STRA1.190e-2765.33ADPribosylation factor 2 putative n=2 Tax=Albugo T... [more]
A0A7S3LJR0_9STRA3.370e-2772.60Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1583contigEcto-sp13_S_contig1583:158..418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score142.5
Seed ortholog evalue9.2e-32
Seed eggNOG ortholog2880.D8LI71
Preferred nameARL2
Model size261
KEGG koko:K07943,ko:K21596
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000132,GO:0000166,GO:0000226,GO:0000278,GO:0000281,GO:0000910,GO:0001505,GO:0001882,GO:0001883,GO:0002090,GO:0002791,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0004857,GO:0005095,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005759,GO:0005794,GO:0005813,GO:0005815,GO:0005818,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0005912,GO:0005924,GO:0005925,GO:0006457,GO:0006810,GO:0006811,GO:0006812,GO:0006836,GO:0006897,GO:0006996,GO:0007010,GO:0007017,GO:0007021,GO:0007043,GO:0007049,GO:0007098,GO:0007154,GO:0007163,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007399,GO:0007405,GO:0007548,GO:0008064,GO:0008104,GO:0008150,GO:0008283,GO:0008356,GO:0009790,GO:0009792,GO:0009914,GO:0009987,GO:0010638,GO:0010646,GO:0010648,GO:0010810,GO:0010811,GO:0010817,GO:0012505,GO:0015630,GO:0015695,GO:0015696,GO:0015870,GO:0015893,GO:0016020,GO:0016043,GO:0016192,GO:0016328,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0017145,GO:0019001,GO:0019003,GO:0019222,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023057,GO:0023061,GO:0030010,GO:0030030,GO:0030054,GO:0030055,GO:0030100,GO:0030154,GO:0030155,GO:0030234,GO:0030540,GO:0030695,GO:0030832,GO:0030833,GO:0030865,GO:0031023,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031122,GO:0031323,GO:0031334,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032271,GO:0032273,GO:0032501,GO:0032502,GO:0032507,GO:0032535,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032886,GO:0032940,GO:0032956,GO:0032970,GO:0033036,GO:0033043,GO:0033365,GO:0034260,GO:0034315,GO:0034329,GO:0034330,GO:0034332,GO:0034333,GO:0034504,GO:0034613,GO:0034622,GO:0035639,GO:0036094,GO:0036445,GO:0036465,GO:0040001,GO:0042221,GO:0042493,GO:0043086,GO:0043087,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043297,GO:0043622,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044430,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045165,GO:0045185,GO:0045196,GO:0045216,GO:0045785,GO:0046660,GO:0046883,GO:0046903,GO:0048103,GO:0048167,GO:0048259,GO:0048488,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048699,GO:0048731,GO:0048806,GO:0048856,GO:0048869,GO:0050708,GO:0050789,GO:0050790,GO:0050794,GO:0050796,GO:0050804,GO:0050805,GO:0050808,GO:0050896,GO:0051046,GO:0051049,GO:0051125,GO:0051128,GO:0051130,GO:0051179,GO:0051223,GO:0051234,GO:0051235,GO:0051293,GO:0051294,GO:0051301,GO:0051336,GO:0051346,GO:0051457,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051649,GO:0051651,GO:0051653,GO:0051656,GO:0055057,GO:0055059,GO:0060255,GO:0060292,GO:0060589,GO:0060627,GO:0061351,GO:0061458,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070161,GO:0070201,GO:0070507,GO:0070727,GO:0070830,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072089,GO:0072595,GO:0090066,GO:0090087,GO:0090276,GO:0097061,GO:0097159,GO:0097367,GO:0097435,GO:0098657,GO:0098722,GO:0098772,GO:0098916,GO:0099003,GO:0099080,GO:0099173,GO:0099177,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0106027,GO:0110053,GO:0120036,GO:1901265,GO:1901363,GO:1901374,GO:1902850,GO:1902903,GO:1902905,GO:1903047,GO:1903530
Exons1
EggNOG free text desc.GTP binding
EggNOG OGsKOG0073@1,KOG0073@2759
Cds size261
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000,ko03036,ko04031
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462836.9383852-CDS-Ecto-sp13_S_contig1583:157..4181681462836.9383852-CDS-Ecto-sp13_S_contig1583:157..418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1583 158..418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1583.4293.1prot_Ecto-sp13_S_contig1583.4293.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1583 158..418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1583.4293.1

>prot_Ecto-sp13_S_contig1583.4293.1 ID=prot_Ecto-sp13_S_contig1583.4293.1|Name=mRNA_Ecto-sp13_S_contig1583.4293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MTAISSREQKTAQKLAGASLLVFANKQDLVGALGAAEIAQVLGLESKQFA
NRHWNIVACSAVTGEGLAQGVDWMVSDIGSRIFMMS*
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mRNA from alignment at Ecto-sp13_S_contig1583:158..418+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1583.4293.1 ID=mRNA_Ecto-sp13_S_contig1583.4293.1|Name=mRNA_Ecto-sp13_S_contig1583.4293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1583:158..418+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTGCGATATCTTCTCGTGAACAAAAAACCGCGCAGAAATTGGCCGG
AGCATCGTTGCTAGTGTTCGCTAACAAGCAAGACCTTGTAGGGGCACTCG
GGGCCGCGGAGATTGCTCAAGTGCTCGGCCTCGAATCCAAGCAGTTCGCC
AATCGGCACTGGAACATCGTCGCCTGCAGCGCCGTCACCGGGGAAGGGCT
TGCCCAAGGGGTGGATTGGATGGTCAGCGATATCGGATCCCGAATATTCA
TGATGTCATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1583:158..418+

>mRNA_Ecto-sp13_S_contig1583.4293.1 ID=mRNA_Ecto-sp13_S_contig1583.4293.1|Name=mRNA_Ecto-sp13_S_contig1583.4293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1583:158..418+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTGCGATATCTTCTCGTGAACAAAAAACCGCGCAGAAATTGGCCGG
AGCATCGTTGCTAGTGTTCGCTAACAAGCAAGACCTTGTAGGGGCACTCG
GGGCCGCGGAGATTGCTCAAGTGCTCGGCCTCGAATCCAAGCAGTTCGCC
AATCGGCACTGGAACATCGTCGCCTGCAGCGCCGTCACCGGGGAAGGGCT
TGCCCAAGGGGTGGATTGGATGGTCAGCGATATCGGATCCCGAATATTCA
TGATGTCATGA
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