mRNA_Ecto-sp13_S_contig15819.4290.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15819.4290.1
Unique NamemRNA_Ecto-sp13_S_contig15819.4290.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15819.4290.1 vs. uniprot
Match: D7FL67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL67_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 2.110e-69
Identity = 111/123 (90.24%), Postives = 113/123 (91.87%), Query Frame = 1 
Query:   19 EERSASASENFERGTAAISAAARPVWPEHVEVEDREGQDTIQVAVVLELARTATKPREKCCHSITTIDVLDVRLRPGEKVTLWRPLQSLGASTQDSIDQDSDHGSGEIQIAVTYNTDDCVDQG 387
            EERSASA++N ERGTAA S AARPVWPE VEVEDREGQDTIQVAVVLELA TATKPREKCCHSIT IDVLDVRLRPGEKVTLWRPL SLGASTQDSID D DHG GEIQIAVTYNTDDCVDQG
Sbjct:   57 EERSASAADNSERGTAANSTAARPVWPEQVEVEDREGQDTIQVAVVLELASTATKPREKCCHSITMIDVLDVRLRPGEKVTLWRPLHSLGASTQDSIDNDGDHGFGEIQIAVTYNTDDCVDQG 179
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BLAST of mRNA_Ecto-sp13_S_contig15819.4290.1 vs. uniprot
Match: D7FL80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL80_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 1.070e-42
Identity = 80/140 (57.14%), Postives = 99/140 (70.71%), Query Frame = 1 
Query:   73 SAAARPVWPEHVEVEDREGQDTIQVAVVLELARTATKPREKCCHSITTIDVLDVRLRPGEKVTLWRPLQSLGAST-QDSIDQDSDHGSGEIQIAVTYNTDDCVDQGYMYALFCGLVPLAFILSWSSRNTKSSFLPADKFL 489
            + A  P+WPE VEVEDR GQDT+Q+A+V  LA TAT  RE  CHS+  IDV D R RP E VTLW+ L+ + AS  +DS+D  S+H  G +QIA+TY +DDCVDQGY +A FCGLVPL  IL + +   +SS LPA KFL
Sbjct:   20 ATAPMPLWPEEVEVEDRAGQDTVQIALVFALAPTATAQRESFCHSVGVIDVRDFRSRPDETVTLWKSLRPVEASPHKDSLD--SNHDVGAVQIAITYYSDDCVDQGYTFAAFCGLVPLPLIL-FLANTKRSSLLPAGKFL 156
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BLAST of mRNA_Ecto-sp13_S_contig15819.4290.1 vs. uniprot
Match: A0A6H5JN36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN36_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 2.000e-41
Identity = 77/135 (57.04%), Postives = 98/135 (72.59%), Query Frame = 1 
Query:   88 PVWPEHVEVEDREGQDTIQVAVVLELARTATKPREKCCHSITTIDVLDVRLRPGEKVTLWRPLQSLGAST-QDSIDQDSDHGSGEIQIAVTYNTDDCVDQGYMYALFCGLVPLAFILSWSSRNTKSSFLPADKFL 489
            P+WPE VEVEDRE QDT+Q+A+V ELA TAT  RE  CHS+  I+V + R RP E VTLW+PL+ + AS  +DS+D  S+H  G +QIA+TY +DDCVD+GY +A FCGLVPL  IL + +   +SS  PA KFL
Sbjct:   31 PLWPEEVEVEDREDQDTVQIALVFELAPTATAQRESFCHSVGAINVGEFRSRPDETVTLWKPLRPVEASPHKDSLD--SNHDVGAVQIAITYYSDDCVDEGYTFAAFCGLVPLPLIL-FLANTKRSSLFPAGKFL 162
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BLAST of mRNA_Ecto-sp13_S_contig15819.4290.1 vs. uniprot
Match: A0A6H5KCK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK4_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 4.030e-40
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:  175 ATKPREKCCHSITTIDVLDVRLRPGEKVTLWRPLQSLGASTQDSIDQDSDHGSGEIQIAVTYNTDDCVDQG 387
            ATKPREKCCHSITTIDVLDVRLRPGEKVTLWRPLQSLGASTQDSID D +HGSGEIQIAVTYNTDDCV QG
Sbjct:    4 ATKPREKCCHSITTIDVLDVRLRPGEKVTLWRPLQSLGASTQDSIDNDGNHGSGEIQIAVTYNTDDCVAQG 74
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BLAST of mRNA_Ecto-sp13_S_contig15819.4290.1 vs. uniprot
Match: A0A6H5K9Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z1_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.190e-15
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:   13 QREERSASASENFERGTAAISAAARPVWPEHVEVEDREGQDTIQVAVVLELART 174
            +REERSASA++N ERG+AA  AAARPVWPE +EVED+EGQDTIQ A+VLELA T
Sbjct:   56 EREERSASATDNSERGSAANPAAARPVWPEQLEVEDKEGQDTIQAALVLELAPT 109
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BLAST of mRNA_Ecto-sp13_S_contig15819.4290.1 vs. uniprot
Match: A0A6H5JLN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN7_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 5.260e-13
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:  100 EHVEVEDREGQDTIQVAVVLELARTATKPREKCCHSITTIDVLDVRLRPGEKVTLWRPLQSLGASTQDSIDQDSDHGSGEIQIAVTYNTDDCVDQGYMYALFCGL 414
            E VE ED+   + ++VAV+ +L       R+   HSI +ID+   R +P ++V LW PLQ +  S  D  D       G IQI++ Y TDDCV QGYM+ LFCGL
Sbjct:   78 EEVEFEDKGVGEKVEVAVLFDLIAREMPKRQLFRHSIASIDLDAFRAQPEKRVELWLPLQPVN-SGNDLRDY------GSIQISIMY-TDDCVTQGYMFGLFCGL 174
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BLAST of mRNA_Ecto-sp13_S_contig15819.4290.1 vs. uniprot
Match: A0A6H5KYD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD5_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 8.630e-9
Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:  235 RLRPGEKVTLWRPLQSLGASTQDSIDQDSDHGSGEIQIAVTYNTDDCVDQGYMYALFCGLVPLAFI 432
            R +P  + TLW PL+ + +  +D          G ++IA TY++ DCV QGY++ALFCGLVPL+++
Sbjct:    5 RQQPDLRTTLWVPLRPVASHLEDPF--------GAVKIAATYHSKDCVPQGYLFALFCGLVPLSWM 62
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15819.4290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FL67_ECTSI2.110e-6990.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FL80_ECTSI1.070e-4257.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JN36_9PHAE2.000e-4157.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCK4_9PHAE4.030e-4094.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9Z1_9PHAE3.190e-1575.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN7_9PHAE5.260e-1342.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYD5_9PHAE8.630e-942.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15819contigEcto-sp13_S_contig15819:4..3820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size735
Hectar predicted targeting categoryother localisation
Exons4
Cds size735
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462836.6993744-CDS-Ecto-sp13_S_contig15819:3..3521681462836.6993744-CDS-Ecto-sp13_S_contig15819:3..352Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15819 4..352 -
1681462836.7113214-CDS-Ecto-sp13_S_contig15819:1206..13381681462836.7113214-CDS-Ecto-sp13_S_contig15819:1206..1338Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15819 1207..1338 -
1681462836.72336-CDS-Ecto-sp13_S_contig15819:1852..19331681462836.72336-CDS-Ecto-sp13_S_contig15819:1852..1933Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15819 1853..1933 -
1681462836.733249-CDS-Ecto-sp13_S_contig15819:3647..38201681462836.733249-CDS-Ecto-sp13_S_contig15819:3647..3820Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15819 3648..3820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15819.4290.1prot_Ecto-sp13_S_contig15819.4290.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15819 4..3820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15819.4290.1

>prot_Ecto-sp13_S_contig15819.4290.1 ID=prot_Ecto-sp13_S_contig15819.4290.1|Name=mRNA_Ecto-sp13_S_contig15819.4290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=245bp
MVPRQREERSASASENFERGTAAISAAARPVWPEHVEVEDREGQDTIQVA
VVLELARTATKPREKCCHSITTIDVLDVRLRPGEKVTLWRPLQSLGASTQ
DSIDQDSDHGSGEIQIAVTYNTDDCVDQGYMYALFCGLVPLAFILSWSSR
NTKSSFLPADKFLEHSPYHKENSTAHKNSNSNSNSNSNSSSSSSSSSSSS
SSSNKAITTSTLTRSSSSSNNNGISSDDIIDKDRDCGNNRDSEKL
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mRNA from alignment at Ecto-sp13_S_contig15819:4..3820-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15819.4290.1 ID=mRNA_Ecto-sp13_S_contig15819.4290.1|Name=mRNA_Ecto-sp13_S_contig15819.4290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3817bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15819:4..3820- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTCCACGACAGAGGGAGGAGCGGAGCGCCAGCGCCTCGGAAAATTT
CGAGCGTGGCACCGCCGCTATCTCCGCCGCCGCGCGACCCGTGTGGCCGG
AGCATGTGGAGGTCGAAGACAGGGAAGGTCAAGACACGATCCAAGTCGCC
GTTGTTTTGGAACTGGCACGAACGTGAGCGTATTCAAAGATCTTGTCAGA
GGGGCTCTTGTATCCATGTTTGATTGATCTTGCGGCATTAAACGCGTACA
TACACGGACACTACGCAATATTCTTGCGGTATCGAGGCGGGTTGATCCGG
TGAACAAGGTTCATGTTGTGGGTCCGTATGGTCGCTTACGCTCACGGACA
GCAACGTCAGGGTACGGGTAGTTTTCACCCAGGGCCTGAAGGTCCAATCC
AGGCACAGTTTCCGACGTCAATCACCGGGAGTCTGAAATAGACTCCCGTA
CACGCACATCGTCTCCTCCCCAATACGGAAGTTCCAGCAAGTAGTCTGTG
GAATTGTGAGTACCCAAACTACGAGCTGCAGGAGCTACTTGCTGACTCAT
TTCATACGTACGCTAATGAAATTCTAAATATTGATAGAGGTGCCACGTGT
CCGTTGGAATGTTTGGTACACCGTAGATACATACAATACATGTACTGCGT
TTGTTTTCTCCCGAGGAGCCATCATCTCTCCTTCGGACCTCTCCGCCCGG
TGTACTCGGAGCCAAGACTCTCGTACCAAAGAGTCCAACGCGGCACAACA
TTGAGTTCGTGCGCCGCGCTGCAGCCGTACGTCCGTACAAAACGTGCACA
GGCTCATACACACTCTCAGTTTTGCCTGTGACATGTGGCTATGTCCATAA
TTGCACAATCGAGGTGCTGTGCCTCCATGCGCATCAGTGACCATTCTTTC
ATTCCCACGTTCTGGTCTGCGGTGAGGGCACGCATCACCTCAACATGTAG
TGAAAAGTGAAAACTCGTTCGAGAACCGATACCAGACTGTCGTCAGCATC
CGCCAAAATGAACACCCAACCACAGGATGTGCCACAAACGTGTGGACGAC
CTGGGCACCCCGGCGTGATTTTCTGATCTCCCCGACTGTGCAACATAGCC
GTTTGTCTCTCCCTCATGGTCGGCACGCAAGCACATCAACACCTTTGATA
CTAAATAAACCAGTGCTGCGTCTTCTGACGATTGACACTTCTACCTCCGC
ATCCTACCCGAAAAAAATCTTGTAGTCTACAACACCAAAGTCGGTGGTCT
GAACTGGCCGCTCCGACAGTTCCATTCCACAGCCGGAGAATGAGCTTCGA
CGGGATACTTACCTGATGCATTCCTAGACGCTACTGGTGACGTTGCGTTT
CGTCGAGGGTGAACCAGTACATGGTACAACGCCTCCCGACCTCGCCGCCT
GATGGTAGCTCTACGACGTCAGGGTAGGGCCTGAAGAGGTCCCGTTGACG
CGCCGATAAAAAACGGGGTACAGCACCAGTTGTTGCTGTTGCTGAGAAAG
GTTCATTGTCACCGGGGCGTAGCATGGTTCTGGTTATGGTATCGATATCG
GATGTCAAGAGGATGCAGTTGAAACATATCATTTTGCCCGCCAAAATCCA
GGTAGGTGCTGGAGACACCGACCATCTTCTCTAAGAGAGGAGTAGGCCAT
ATTCCCCGTGTCGCATTTTTTGTTGGAACGTTCGGTTTGAGGCTCGAAGT
GAGGGTTACATACATATATGTGGGTAGATGAATAGGTTCGCACTGACATG
GACGGCTCGTGTTGGTGGTGTAATGAAAGCCTGAGACTTTTAAATTCTTA
TGCTAAAAACAGGAACGTTTGCGGGTGAACCTTTCGCCGACTCCCTCCGT
GTGAACCGTTGTCCCCACCACTTGTCCCGATAAATAGGGCAACGAAGCCG
CGCGAGAAGTGTTGCCATTCCATCACAACGATCGATGTACTCGACGTTAG
ACTACGGCCTGGTGAAAAGTGAGTGCTGCAGCAAGACCAATGTACCGTAG
CGTAGTAATGATGCGGGACCGGCGATACACTCTGTAGTCTCAGATCGTTC
CTCCTAGCTCGTCGTTGGGGCACTTTCCGGTTTGCATTTACGAAATGGTA
CGTCTTTGTCGATCTTTTTTGTTTTTCGATTCAGGTTTGCTCCGTCGGCC
CCTTCGTCTGTCGATAAAATCCAGTTGCTATCAGCGACTCGCGGTTTCAG
CCATCAACCACTGCTCGCGCTGCCCCGATGGTCCCAAGCACCTACTAATA
ATGGCGATTCCAAGGCGCCCTTGAGTCACCTCATCTTTGTGGTTAAGATC
CTTGGCGCCATGGTGATTGCGTTGCACCAAATCACTCACTCTTTTCCTTG
TACCATTTCCTGCGCGCATCTCACCCGGATTGAGCCTGCATCCTTGAAGG
TACATCTCTGCTGTCAATTTGAACATGATCGCCTTCGTTTCCGTTTCGGT
TGATTCTGGGTGCGCTTGTATGAGGCTACCAGGGTCACACTTTGGAGGCC
TCTTCAATCGCTAGGGGCGTCGACCCAGGACTCCATCGATCAGGATAGCG
ACCACGGCTCCGGAGAAATCCAGATTGCTGTCACGTACAACACGGATGAC
TGCGTAGATCAAGGGTGAGAGGAGCACGTAATTGCGTCCAAAACGTGCGT
GTGTGTTGCTTATTATTGCCATCGACCGCGCTAATCGCCTGACCAATTGA
AAAACGTCGGTCTCAATGCGTGTGGGTGGTCTCGTTCACAAGGCACCGAC
CGCACTGTCCGGACCGCCACTGACTAAACGACGACGATATTGTTGAGGAA
AACAACGCGGATGCATCCCCTGATGACAGCAAGTAGACCGGACTAAAGTC
AGAGAAGTGCCGCAGTTCAATTCTGTCCGGGGGATAGGGGAAGTGACTCC
TCCGAAGTGACTCAGTGGCGCGAACATCATGTGTTTCGTTGAATACCTTG
GCCGACCTTCAAGCAAAGCGATTACCGTACAGACAGACAGGCTAGAATTC
CCTTACCGCGAAACAAAATTTCCAATTGTTCACTGTACCCCATTGCGAGG
GAAGAGGGAGACCGAACGGGGCGACCTATTGTTTTGCATGCCTTTGTTGT
TAAGGTCATGGACTACTTGTCCTCGAGAGGACGGAGCAATGTTCCCAAAA
GACCGATCACGGATACTTTGCCGAAGGGGGCGGTAGTTCGGTGACCGCAT
TCATTGCGTTACGCCCGGATTGCGTTAGGTCCGTGTGGGTGGTTGCATAG
CGCACGACACGGCCATGTCCTCCTCTCCTTTAGATCGATGTCCTCCCCGA
TGACGCACATGAGGCGCCATGCTGTCTTCACTAACCTTCCCATACAACAA
AGAAGAAACAGCACCGTGTTCATAATTCTCCACACCCGAAACACTTCGAC
CGAATAGCACACCTACCGTCACTCTCCAACTAACCTACCCCCCCCCCCCG
TTGCTATGTACCCCCCAGATATATGTACGCTCTTTTCTGCGGGCTTGTAC
CTTTGGCGTTCATCCTATCCTGGTCCTCCAGGAATACCAAGTCTTCCTTC
CTACCAGCCGACAAGTTCCTCGAGCACAGCCCGTACCACAAAGAAAACAG
CACGGCCCACAAAAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAAAGCC
ATCACCACGAGTACATTAACGAGGAGCAGCAGTAGCAGCAACAACAACGG
TATCAGCAGCGACGACATCATCGACAAGGACCGGGACTGCGGCAACAATA
GAGACAGCGAGAAGTTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15819:4..3820-

>mRNA_Ecto-sp13_S_contig15819.4290.1 ID=mRNA_Ecto-sp13_S_contig15819.4290.1|Name=mRNA_Ecto-sp13_S_contig15819.4290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15819:4..3820- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTCCACGACAGAGGGAGGAGCGGAGCGCCAGCGCCTCGGAAAATTT
CGAGCGTGGCACCGCCGCTATCTCCGCCGCCGCGCGACCCGTGTGGCCGG
AGCATGTGGAGGTCGAAGACAGGGAAGGTCAAGACACGATCCAAGTCGCC
GTTGTTTTGGAACTGGCACGAACGGCAACGAAGCCGCGCGAGAAGTGTTG
CCATTCCATCACAACGATCGATGTACTCGACGTTAGACTACGGCCTGGTG
AAAAGGTCACACTTTGGAGGCCTCTTCAATCGCTAGGGGCGTCGACCCAG
GACTCCATCGATCAGGATAGCGACCACGGCTCCGGAGAAATCCAGATTGC
TGTCACGTACAACACGGATGACTGCGTAGATCAAGGATATATGTACGCTC
TTTTCTGCGGGCTTGTACCTTTGGCGTTCATCCTATCCTGGTCCTCCAGG
AATACCAAGTCTTCCTTCCTACCAGCCGACAAGTTCCTCGAGCACAGCCC
GTACCACAAAGAAAACAGCACGGCCCACAAAAACAGCAACAGCAACAGCA
ACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAACAAAGCCATCACCACGAGTACATTAACGAGGAGCAGCAG
TAGCAGCAACAACAACGGTATCAGCAGCGACGACATCATCGACAAGGACC
GGGACTGCGGCAACAATAGAGACAGCGAGAAGTTA
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