prot_Ecto-sp13_S_contig15818.4289.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15818.4289.1
Unique Nameprot_Ecto-sp13_S_contig15818.4289.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length117
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15818.4289.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 1.670e-63
Identity = 108/117 (92.31%), Postives = 112/117 (95.73%), Query Frame = 0 
Query:    1 AGAEPGNADRRVVIVSRSDSGCCDSSDGSSDAKGRFAPVLGELAQKVRSGDELSFVPYALPTVTLACRSTDESTSGGDSSPDACGXXXXAAIEHAMWMSDWVGAEALPPALAVIDGE 117
            AGAEPGNAD+R+VIVSRSDSGCCDSSDGSSDAKGRFAPVLGELAQKVRSGDELSFVPYALP+VTLACRSTDE+T GGDSSPDACG    AAIEHAMWMSDWVGAEALPPALAVIDGE
Sbjct:  633 AGAEPGNADKRLVIVSRSDSGCCDSSDGSSDAKGRFAPVLGELAQKVRSGDELSFVPYALPSVTLACRSTDENTGGGDSSPDACGGRGGAAIEHAMWMSDWVGAEALPPALAVIDGE 749
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15818.4289.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 3.900e-60
Identity = 105/117 (89.74%), Postives = 107/117 (91.45%), Query Frame = 0 
Query:    1 AGAEPGNADRRVVIVSRSDSGCCDSSDGSSDAKGRFAPVLGELAQKVRSGDELSFVPYALPTVTLACRSTDESTSGGDSSPDACGXXXXAAIEHAMWMSDWVGAEALPPALAVIDGE 117
            AGAEPGNAD++VVIVSRSDSGCCDSSDGS DAKGRFA VLGELA KVRSGDELSFVPYALPTVTLACRS D ST GGDSSPDACG    AAIEHAMWMSDWVGAEALPPALAVIDGE
Sbjct:  633 AGAEPGNADKKVVIVSRSDSGCCDSSDGSGDAKGRFALVLGELAHKVRSGDELSFVPYALPTVTLACRSMDGSTGGGDSSPDACGGSGRAAIEHAMWMSDWVGAEALPPALAVIDGE 749
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15818.4289.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G824_ECTSI1.670e-6392.31PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K928_9PHAE3.900e-6089.74PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15818contigEcto-sp13_S_contig15818:2400..2750 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15818.4289.1mRNA_Ecto-sp13_S_contig15818.4289.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15818 2400..2752 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15818.4289.1 ID=prot_Ecto-sp13_S_contig15818.4289.1|Name=mRNA_Ecto-sp13_S_contig15818.4289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
AGAEPGNADRRVVIVSRSDSGCCDSSDGSSDAKGRFAPVLGELAQKVRSG
DELSFVPYALPTVTLACRSTDESTSGGDSSPDACGGGGGAAIEHAMWMSD
WVGAEALPPALAVIDGE
back to top