mRNA_Ecto-sp13_S_contig15818.4289.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15818.4289.1
Unique NamemRNA_Ecto-sp13_S_contig15818.4289.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15818.4289.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 1.670e-63
Identity = 108/117 (92.31%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:    1 AGAEPGNADRRVVIVSRSDSGCCDSSDGSSDAKGRFAPVLGELAQKVRSGDELSFVPYALPTVTLACRSTDESTSGGDSSPDACGXXXXAAIEHAMWMSDWVGAEALPPALAVIDGE 351
            AGAEPGNAD+R+VIVSRSDSGCCDSSDGSSDAKGRFAPVLGELAQKVRSGDELSFVPYALP+VTLACRSTDE+T GGDSSPDACG    AAIEHAMWMSDWVGAEALPPALAVIDGE
Sbjct:  633 AGAEPGNADKRLVIVSRSDSGCCDSSDGSSDAKGRFAPVLGELAQKVRSGDELSFVPYALPSVTLACRSTDENTGGGDSSPDACGGRGGAAIEHAMWMSDWVGAEALPPALAVIDGE 749
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BLAST of mRNA_Ecto-sp13_S_contig15818.4289.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 3.900e-60
Identity = 105/117 (89.74%), Postives = 107/117 (91.45%), Query Frame = 1 
Query:    1 AGAEPGNADRRVVIVSRSDSGCCDSSDGSSDAKGRFAPVLGELAQKVRSGDELSFVPYALPTVTLACRSTDESTSGGDSSPDACGXXXXAAIEHAMWMSDWVGAEALPPALAVIDGE 351
            AGAEPGNAD++VVIVSRSDSGCCDSSDGS DAKGRFA VLGELA KVRSGDELSFVPYALPTVTLACRS D ST GGDSSPDACG    AAIEHAMWMSDWVGAEALPPALAVIDGE
Sbjct:  633 AGAEPGNADKKVVIVSRSDSGCCDSSDGSGDAKGRFALVLGELAHKVRSGDELSFVPYALPTVTLACRSMDGSTGGGDSSPDACGGSGRAAIEHAMWMSDWVGAEALPPALAVIDGE 749
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15818.4289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G824_ECTSI1.670e-6392.31PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K928_9PHAE3.900e-6089.74PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15818contigEcto-sp13_S_contig15818:2400..2752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score223.4
Seed ortholog evalue5.5e-56
Seed eggNOG ortholog2880.D7G824
Model size354
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.vacuolar proton-transporting V-type ATPase complex assembly
EggNOG OGsKOG1064@1,KOG1064@2759
Cds size351
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462836.6607664-CDS-Ecto-sp13_S_contig15818:2399..27501681462836.6607664-CDS-Ecto-sp13_S_contig15818:2399..2750Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15818 2400..2750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15818.4289.1prot_Ecto-sp13_S_contig15818.4289.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15818 2400..2750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15818.4289.1

>prot_Ecto-sp13_S_contig15818.4289.1 ID=prot_Ecto-sp13_S_contig15818.4289.1|Name=mRNA_Ecto-sp13_S_contig15818.4289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
AGAEPGNADRRVVIVSRSDSGCCDSSDGSSDAKGRFAPVLGELAQKVRSG
DELSFVPYALPTVTLACRSTDESTSGGDSSPDACGGGGGAAIEHAMWMSD
WVGAEALPPALAVIDGE
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mRNA from alignment at Ecto-sp13_S_contig15818:2400..2752+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15818.4289.1 ID=mRNA_Ecto-sp13_S_contig15818.4289.1|Name=mRNA_Ecto-sp13_S_contig15818.4289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15818:2400..2752+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGGGGCGGAGCCGGGGAACGCCGACAGGAGGGTCGTTATTGTTAGCCG
CAGCGACTCGGGTTGTTGCGACAGCTCGGACGGCAGCAGCGACGCAAAGG
GCAGATTCGCACCCGTCTTGGGCGAGCTGGCCCAGAAAGTCAGGTCCGGC
GACGAGCTGTCCTTCGTTCCGTACGCCCTGCCTACCGTGACCCTTGCGTG
CCGCTCGACGGACGAGAGCACCAGCGGCGGCGATTCCAGTCCCGACGCCT
GCGGCGGCGGCGGCGGGGCCGCCATCGAGCACGCGATGTGGATGTCGGAC
TGGGTAGGCGCGGAAGCCTTGCCCCCGGCCCTCGCCGTGATCGACGGCGA
GAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15818:2400..2752+

>mRNA_Ecto-sp13_S_contig15818.4289.1 ID=mRNA_Ecto-sp13_S_contig15818.4289.1|Name=mRNA_Ecto-sp13_S_contig15818.4289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15818:2400..2752+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGGGGCGGAGCCGGGGAACGCCGACAGGAGGGTCGTTATTGTTAGCCG
CAGCGACTCGGGTTGTTGCGACAGCTCGGACGGCAGCAGCGACGCAAAGG
GCAGATTCGCACCCGTCTTGGGCGAGCTGGCCCAGAAAGTCAGGTCCGGC
GACGAGCTGTCCTTCGTTCCGTACGCCCTGCCTACCGTGACCCTTGCGTG
CCGCTCGACGGACGAGAGCACCAGCGGCGGCGATTCCAGTCCCGACGCCT
GCGGCGGCGGCGGCGGGGCCGCCATCGAGCACGCGATGTGGATGTCGGAC
TGGGTAGGCGCGGAAGCCTTGCCCCCGGCCCTCGCCGTGATCGACGGCGA
G
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