mRNA_Ecto-sp13_S_contig15818.4288.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15818.4288.1
Unique NamemRNA_Ecto-sp13_S_contig15818.4288.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15818.4288.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 2.660e-51
Identity = 93/99 (93.94%), Postives = 95/99 (95.96%), Query Frame = 1 
Query:    1 YYDAQGADGAPAEVQVVAPAAGGTIAVITARVHRAESRSRYVFRNTRSVALPMGQVEGVPDPPQEAGNGAGKRAKVVGLAATEAVCHPNLPLLVRLEGG 297
            YYDAQGADGAPAEVQVVAPAAGGTIAVITARVHRA+SRSRYVFRNTRSVALPMGQV GVPDPPQEAG+GAGKR KVVGLA TEAVCHPNLPLL RLEGG
Sbjct:  498 YYDAQGADGAPAEVQVVAPAAGGTIAVITARVHRADSRSRYVFRNTRSVALPMGQVAGVPDPPQEAGSGAGKRPKVVGLAGTEAVCHPNLPLLARLEGG 596
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BLAST of mRNA_Ecto-sp13_S_contig15818.4288.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 1.250e-50
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 1 
Query:    1 YYDAQGADGAPAEVQVVAPAAGGTIAVITARVHRAESRSRYVFRNTRSVALPMGQVEGVPDPPQEAGNGAGKRAKVVGLAATEAVCHPNLPLLVRLEGG 297
            YYDAQGADGAPAEVQVVAPAAGGTIAVITARVHRA+SRSRYVFRNTRSVALPMGQV GVPDPPQEAG GAGKRA+V G AATEAVCHPNLPLL RLEGG
Sbjct:  498 YYDAQGADGAPAEVQVVAPAAGGTIAVITARVHRADSRSRYVFRNTRSVALPMGQVAGVPDPPQEAGGGAGKRARVAGRAATEAVCHPNLPLLARLEGG 596
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15818.4288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K928_9PHAE2.660e-5193.94PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G824_ECTSI1.250e-5092.93PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15818contigEcto-sp13_S_contig15818:1995..2291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score182.6
Seed ortholog evalue9.2e-44
Seed eggNOG ortholog2880.D7G824
Model size298
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.vacuolar proton-transporting V-type ATPase complex assembly
EggNOG OGsKOG1064@1,KOG1064@2759
Cds size297
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462836.6313043-CDS-Ecto-sp13_S_contig15818:1994..22911681462836.6313043-CDS-Ecto-sp13_S_contig15818:1994..2291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15818 1995..2291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15818.4288.1prot_Ecto-sp13_S_contig15818.4288.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15818 1995..2291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15818.4288.1

>prot_Ecto-sp13_S_contig15818.4288.1 ID=prot_Ecto-sp13_S_contig15818.4288.1|Name=mRNA_Ecto-sp13_S_contig15818.4288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
YYDAQGADGAPAEVQVVAPAAGGTIAVITARVHRAESRSRYVFRNTRSVA
LPMGQVEGVPDPPQEAGNGAGKRAKVVGLAATEAVCHPNLPLLVRLEGG
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mRNA from alignment at Ecto-sp13_S_contig15818:1995..2291+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15818.4288.1 ID=mRNA_Ecto-sp13_S_contig15818.4288.1|Name=mRNA_Ecto-sp13_S_contig15818.4288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15818:1995..2291+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACTACGACGCTCAGGGAGCCGACGGGGCTCCCGCTGAGGTCCAGGTCGT
GGCGCCGGCGGCGGGCGGCACGATAGCCGTCATCACGGCGAGGGTCCACC
GTGCCGAGTCGAGGAGTAGGTACGTATTCCGCAACACGCGCTCGGTGGCG
CTGCCCATGGGCCAGGTGGAAGGGGTACCGGACCCGCCGCAGGAGGCCGG
GAATGGGGCTGGGAAGAGGGCCAAGGTTGTTGGGCTAGCCGCCACCGAAG
CGGTTTGTCATCCGAACCTCCCGCTCTTGGTGAGGCTAGAGGGCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15818:1995..2291+

>mRNA_Ecto-sp13_S_contig15818.4288.1 ID=mRNA_Ecto-sp13_S_contig15818.4288.1|Name=mRNA_Ecto-sp13_S_contig15818.4288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15818:1995..2291+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACTACGACGCTCAGGGAGCCGACGGGGCTCCCGCTGAGGTCCAGGTCGT
GGCGCCGGCGGCGGGCGGCACGATAGCCGTCATCACGGCGAGGGTCCACC
GTGCCGAGTCGAGGAGTAGGTACGTATTCCGCAACACGCGCTCGGTGGCG
CTGCCCATGGGCCAGGTGGAAGGGGTACCGGACCCGCCGCAGGAGGCCGG
GAATGGGGCTGGGAAGAGGGCCAAGGTTGTTGGGCTAGCCGCCACCGAAG
CGGTTTGTCATCCGAACCTCCCGCTCTTGGTGAGGCTAGAGGGCGGC
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