mRNA_Ecto-sp13_S_contig15816.4287.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15816.4287.1
Unique NamemRNA_Ecto-sp13_S_contig15816.4287.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15816.4287.1 vs. uniprot
Match: D7G2X1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X1_ECTSI)

HSP 1 Score: 361 bits (927), Expect = 7.970e-106
Identity = 267/473 (56.45%), Postives = 271/473 (57.29%), Query Frame = 2 
Query:    2 AKIDSEGQLVRQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT--PGEDKRPPGFPTQDPSSTAEREEISRSRPNGVTGGEPPWKGFTLSDDGEALLRRRRGPSPEHVSPVQGREDSEYQLIVPGVKDNLVNFSVDTVAVRTNYGKLRRGVEIRHRVRADIAP*KLVSGADLLRSRH*YGWRLRRPNLGIPVTPTWAPRVTTKIIRRAPQRKHPPIHPQKKLCWRHHCVEVYFFDYCRNAVISVENEPVAHGKATKDRQCACAPHTRNLLNFECHYLVQW*YLKVDLYRKYSRRCHR*RTVAH*NTHS*HICRVSVRCNFVISVRQMGIGEDGENTDPDDEDMQEANDNDGSPMLTVRAATDRQSGDLSRDVDDDSSAPSTRERLLSRPSTSGAVLEISFRRRTGVQGGRRSYYAEAPVPVVDPAGTIARASRIVTD-------MMSPLDSLRGDVGFDNDDDNNNADVSG 1393
            AKIDSEGQLVRQAAXXXXXXXXXXXXXXXXXXXXXXXXXXX      PGEDKR PGFP Q PSST ER EISRSRPNGV GGEPPWKGFTLSDDGEALLRRRR PSPEHVSPVQGREDSEYQLIVPGVKDNLVNFSVDTVAVRTNYGKLRRGVEIRHR                                                                                                                                                                          MGIGEDGENTDPDDEDM EAND+DGSPMLT+RAATDR SGDLS D D DSSAPSTRERLLSRPSTSGA+ EIS RRRTGVQGGRRSY AEAPVPVVDPAGTIARASRIVT+       MMSPLDSLRGDVGFDNDD   N DVSG
Sbjct: 4669 AKIDSEGQLVRQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAAAMPGEDKRLPGFPAQGPSSTTERGEISRSRPNGVKGGEPPWKGFTLSDDGEALLRRRRAPSPEHVSPVQGREDSEYQLIVPGVKDNLVNFSVDTVAVRTNYGKLRRGVEIRHR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGIGEDGENTDPDDEDMPEANDDDGSPMLTIRAATDRLSGDLSSDFDYDSSAPSTRERLLSRPSTSGAIPEISLRRRTGVQGGRRSY-AEAPVPVVDPAGTIARASRIVTELRLDGENMMSPLDSLRGDVGFDNDD---NTDVSG 4967
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15816.4287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2X1_ECTSI7.970e-10656.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15816contigEcto-sp13_S_contig15816:481..3266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score215.3
Seed ortholog evalue1.8e-53
Seed eggNOG ortholog2880.D7G2X1
Model size1299
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.ankyrin repeats
EggNOG OGs2ATNU@1,2RZSD@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-09_004610.1
Cds size417
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462836.5411968-UTR-Ecto-sp13_S_contig15816:480..7551681462836.5411968-UTR-Ecto-sp13_S_contig15816:480..755Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15816 481..755 +
1681462836.5537744-UTR-Ecto-sp13_S_contig15816:1126..12121681462836.5537744-UTR-Ecto-sp13_S_contig15816:1126..1212Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15816 1127..1212 +
1681462836.5702283-UTR-Ecto-sp13_S_contig15816:1818..19261681462836.5702283-UTR-Ecto-sp13_S_contig15816:1818..1926Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15816 1819..1926 +
1681462836.601068-UTR-Ecto-sp13_S_contig15816:2853..32661681462836.601068-UTR-Ecto-sp13_S_contig15816:2853..3266Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15816 2854..3266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462836.5904179-CDS-Ecto-sp13_S_contig15816:2436..28531681462836.5904179-CDS-Ecto-sp13_S_contig15816:2436..2853Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15816 2437..2853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15816.4287.1prot_Ecto-sp13_S_contig15816.4287.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15816 2437..2853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15816.4287.1

>prot_Ecto-sp13_S_contig15816.4287.1 ID=prot_Ecto-sp13_S_contig15816.4287.1|Name=mRNA_Ecto-sp13_S_contig15816.4287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
MGIGEDGENTDPDDEDMQEANDNDGSPMLTVRAATDRQSGDLSRDVDDDS
SAPSTRERLLSRPSTSGAVLEISFRRRTGVQGGRRSYYAEAPVPVVDPAG
TIARASRIVTDMMSPLDSLRGDVGFDNDDDNNNADVSG*
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mRNA from alignment at Ecto-sp13_S_contig15816:481..3266+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15816.4287.1 ID=mRNA_Ecto-sp13_S_contig15816.4287.1|Name=mRNA_Ecto-sp13_S_contig15816.4287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2786bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15816:481..3266+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAAAAATCGACAGCGAGGGACAGCTCGTCCGACAGGCGGCAGCCGCCT
CCACACCCACCTCTTCATCATCAGGAAATGGTTCGTCGTTGGTGCACCAC
GCAGTACCTGCTGCTTCTCCGCCCGCTGCTGCAACGCCGGGTGAAGACAA
ACGGCCACCAGGGTTTCCTACGCAGGACCCTTCGAGTACCGCCGAAAGGG
AAGAGATCAGCAGGAGTCGGCCCAATGGAGTCACGGGAGGCGAACCTCCT
TGGAAGGGCTTTACTCTCAGCGACGGTAGGAAGTTGTCGCAGTGTTAAAC
GACACCATGTGTGCTCTGCGGCAAGCCTTCCCCCGCTTCTTTAGTCTTCC
TACAAGTATACTGGCTCGTTCTCGCGAAACTACAGATCACGCATCGCTTC
CTGCTCCAGCTGATGTTCTTCTTGCTCGAGCCGGGTGTTGCTTCCTTCCT
TCAGCCCGCGCCCACCGGTTTGCTGATGACACAATGTCCGTCTGTGCATA
ATCGCGAATGCATGAGCGTTTTCAAATTGGTTTTGAGATGAATCAATATG
TTTCATCGAACGTCTCGACGATCGATGAATCCTACGGTGTTCATATGATG
ACCGATTAACATGAAGTCGCTTATGCCGCTCGTTCTGACGAATCAGACGG
AGAGGCGTTGCTCCGACGGCGGCGCGGCCCGTCCCCCGAACACGTTTCAC
CGGTCCAGGGCAGGGAAGACTCGGAGTACCAGGTAACAAGTCGCAACGTT
GAGCGAAGAATCGCCTCCTTTCCGCCTGGTTTGTTTGGTCTGTGTCGTGT
GCCGTTTTTATTCAAGCAGCGACTTCAACCACAACAAGGTGCAGCCTTCT
GTGCATGTGGGAGTGGGAAGTGTTAAGTAGTTTTGGAGGGTGTCGGATGC
ATAGCCGTAGACCATGTCCCGCGAGAAAAGCGGTGCAGGTATATCACAAC
CCCTACCTCTACTTCACCTCCCAAGGAGCTTCTTCAACCGCCAACACGCG
AAGTGCGATCAACACGCCTCCGGGGGCGAAACTAACCCTATCTTGGTGTT
ACTCCTGGATCTCCATCGCGTCGAATGCAGGCCTGACCTAACTTTGCTTG
TATGGAGCGCCCTGTCGGGCGAAACCCGCCGTATATTATTCATATATGCA
ATGGTCTTGCTGATACCAAACATTGGAAAGAACTGAAACTGGAGATCAAA
CCTTCAGACCTCCAAATCTCACAGCCAGTGGTTCTGATGGCGTCATCCGC
GTGGACCTGCCTCAATACTGCTGTCACATTGAACTCCGCTTGTGTGTCCT
ACCTTGCTACTGATGTCACATTCTACATTGTTTGACAGCTTATTGTGCCT
GGGGTGAAGGACAACCTGGTCAACTTCAGCGTGGATACGGTCGCCGTGCG
GACGAACTACGGGAAACTCAGACGGGGCGTGGAAATTCGACACAGGGTAC
GCGCTGATATCGCCCCGTGAAAACTTGTGTCTGGTGCCGATTTGCTTCGA
AGCCGTCACTGATACGGTTGGAGACTCCGGCGACCAAACCTCGGGATACC
GGTTACGCCGACATGGGCACCAAGGGTAACAACAAAGATAATCCGACGAG
CGCCACAGCGAAAACATCCACCTATCCACCCCCAAAAAAAACTGTGCTGG
CGACATCATTGTGTTGAAGTTTATTTTTTCGATTACTGTAGGAATGCGGT
AATTAGTGTCGAAAACGAACCTGTTGCACATGGGAAAGCAACGAAAGACA
GACAGTGTGCTTGTGCCCCTCACACCCGTAATCTACTTAATTTTGAATGC
CATTACCTGGTTCAATGGTGATACCTCAAGGTAGATTTATATCGAAAATA
CTCCCGACGATGCCACCGGTGAAGAACCGTCGCACATTGAAACACACACT
CTTGACACATATGTCGTGTTTCTGTACGATGCAACTTCGTGATCTCCGTC
CGACAGATGGGGATTGGCGAAGACGGCGAAAATACCGATCCCGACGACGA
GGACATGCAAGAAGCGAACGATAATGATGGCAGCCCGATGCTAACCGTAC
GCGCAGCAACAGACCGGCAGTCGGGGGACCTAAGCCGCGACGTTGATGAC
GACAGCAGTGCTCCGAGCACACGTGAACGATTGTTGTCTCGTCCTAGCAC
CTCGGGGGCAGTTCTCGAAATTTCTTTCCGACGTCGCACTGGGGTGCAAG
GAGGCCGTCGCAGCTACTACGCGGAAGCGCCGGTTCCTGTGGTAGATCCC
GCTGGAACGATCGCCCGGGCTTCAAGAATAGTCACAGACATGATGTCCCC
TCTGGATTCACTGAGGGGCGATGTGGGTTTCGACAATGACGACGACAATA
ATAATGCCGATGTGTCGGGGTGAAATAACAATCCAATCAATGCGATGGAG
CATCTCACCGTGTACACGACGGCCCGGGGGAGGCGAAGGACAACACCAGG
CTATCGAAAAGGTCTCATTTCAATGTTTCCCGCATGGACAAGCATCTTGG
GAATAAGCTTCTTATACGGAAGTAGGGATTGTTTGCGCGTTGTCGGGCCC
CGCCGTGTGTCCGACCCCACTCTTTTAACCAATAGACTAGTCTACAGTGT
CGATACTGACAAGAGAGAGGTGTCTGTCTGTGTCGATATTTATTACTCTT
CTTCTCTTGCTTGTCGTCCTAACCCCCCCCCCAACAATAATTCTCGTTGG
TTGTGTGTGTCCAATCAATCACTGTAGTACGAGTTTCTAAGATAGACTAC
ATTTTTACTGGGTCGTTATTTGCCGAAGTGATGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15816:481..3266+

>mRNA_Ecto-sp13_S_contig15816.4287.1 ID=mRNA_Ecto-sp13_S_contig15816.4287.1|Name=mRNA_Ecto-sp13_S_contig15816.4287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15816:481..3266+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGATTGGCGAAGACGGCGAAAATACCGATCCCGACGACGAGGACAT
GCAAGAAGCGAACGATAATGATGGCAGCCCGATGCTAACCGTACGCGCAG
CAACAGACCGGCAGTCGGGGGACCTAAGCCGCGACGTTGATGACGACAGC
AGTGCTCCGAGCACACGTGAACGATTGTTGTCTCGTCCTAGCACCTCGGG
GGCAGTTCTCGAAATTTCTTTCCGACGTCGCACTGGGGTGCAAGGAGGCC
GTCGCAGCTACTACGCGGAAGCGCCGGTTCCTGTGGTAGATCCCGCTGGA
ACGATCGCCCGGGCTTCAAGAATAGTCACAGACATGATGTCCCCTCTGGA
TTCACTGAGGGGCGATGTGGGTTTCGACAATGACGACGACAATAATAATG
CCGATGTGTCGGGGTGA
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