mRNA_Ecto-sp13_S_contig15815.4286.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15815.4286.1 vs. uniprot
Match: D7FPH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPH8_ECTSI) HSP 1 Score: 393 bits (1010), Expect = 1.360e-121 Identity = 207/429 (48.25%), Postives = 273/429 (63.64%), Query Frame = 2
Query: 188 RGPGRPRAS--AVRSPP-VDPVSGDFTDDLINTGLGNPTDFSLTVTSMESGNIPSHVYDQIVAYAKGCTVRFVGSQERGEEKRNLHMQCVGTWALMKTFDTPTKLNAAMRKHIRDKSGIASNDRIKIVVKPLEGKQTFTDMVGYCCKDSGKGHYKTFRKNVTKAEANTALTEYRALQRQTVKDNRVEWGKENFWSILHRFKQENIRALTVSPQLAAQWLVNDGEYLPSYSWICPTGNSGMVSEAADAYWVALLTPKLFTRKHAYVLFFSGGYSGRTTSSFALWDNIDREFEELSVDEAKVCSHDRLRVQGAMDLARERAAREMAAYRHEPDGVLRFAVDRDSDEHDPLPAAPGQADCPAPRAVATRERLSTMVRTATDNSAASEPLPLLVYPNCVEAGCTKAGNGGMVTCFSCDGQLHRACGTLVNEDN 1465
R PGRPR S A R P + P +GD DD+I++G+G P DFS+T+ + NI ++++ A+ VR + S ERG+ NLH+Q + T AL K F K AA+R+ +R G + D++KI +K L +QTF+ MVGYC KD G+ H+KT K V++ E N AL EYR LQR V + R + GK+NFW +L RFKQE++R ++VSP W +NDGE +PS++WICPT M + ADAY+ AL++P LFTRK AY+LFFSGG GR +SSFA WD DREF E++VD+AKVCSHDR ++GAMD+ARER R++A P GV+ F VD DSD A A R + + RTA D S+ASE LPL++ P CVE GCTKAGN MV C CDG LHR+CG E++
Sbjct: 282 RRPGRPRKSPPASREPSWICPTTGDIADDIIDSGVGAPHDFSVTIGNRSGANIKESLFNEGCAWMTKRAVRGITSMERGDINGNLHLQGIWTLALKKDFGDSKKEEAALRRKLRVDCGWTAADKVKITIKRLIKQQTFSGMVGYCSKDEGRSHFKTVTKGVSRTEVNIALAEYRTLQRFVVSELRTDIGKKNFWGVLRRFKQEHLRGISVSPVQLISWYINDGEGMPSHTWICPTSAFAMEAARADAYFTALMSPSLFTRKDAYLLFFSGGQGGRVSSSFAKWDYQDREFSEMTVDQAKVCSHDRQELEGAMDIARERIMRDIAESHRAPAGVVNFPVDADSDAGSDSDVAXXXXXXXA------RRQWDRIGRTAADTSSASEELPLIICPKCVEPGCTKAGNIAMVACNLCDGDLHRSCGVRGGEED 704
BLAST of mRNA_Ecto-sp13_S_contig15815.4286.1 vs. uniprot
Match: D7G8U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U7_ECTSI) HSP 1 Score: 334 bits (857), Expect = 1.260e-103 Identity = 182/387 (47.03%), Postives = 240/387 (62.02%), Query Frame = 2
Query: 386 VRFVGSQERGEEKRNLHMQCVGTWALMKTFDTPTKLNAAMRKHIRDKSGIASNDRIKIVVKPLEGKQTFTDMVGYCCKDSGKGHYKTFRKNVTKAEANTALTEYRALQRQTVKDNRVEWGKENFWSILHRFKQENIRALTVSPQLAAQWLVNDGEYLPSYSWICPTGNSGMVSEAADAYWVALLTPKLFTRKHAYVLFFSGGYSGRTTSSFALWDNIDREFEELSVDEAKVCSHDRLRVQGAMDLARERAAREMAAYRHEPDGVLRFAVDRDSDEHDPLPAAPGQADCPAPRAVATRERLSTMVRTATDNSAASEPLPLLVYPNCVEAGCTKAGNGGMVTCFSCDGQLHRACGTLVNEDNPESTD----RRCSSCVSAGKGKRKAPS 1534
VR + S ERG NLH+Q + T L+K FD P K AAMRK IR S+ ++KIV+K L +QTF+ M+GYC KD G+ H+KT K V++ E N AL EYR LQR V ++RVE GK+NFW +L RFKQE++R + VSP W++ D + +PS SWICP+ M + ADA+ +AL P LF RKHAY+LFF+GG R +S WD DREF +++VD+AKVCSHD L ++GAMD ARERA RE+A R GV F DSD + G P PR +R + + RT+ D S A+EPLPL+V P C+E GCT AGN GM++C C G LHR CG ++ + D +RC+ C +GK++A S
Sbjct: 2 VRGLVSLERGNVHGNLHLQGILTAGLVKYFDDPRKEEAAMRKSIRQACEWKSHVKVKIVIKRLMRQQTFSGMLGYCSKDQGRPHFKTSSKGVSQTEINVALAEYRKLQRVCVTEDRVELGKKNFWGLLRRFKQEHLRGIFVSPLQMVTWIIQDQQAVPSSSWICPSSAFPMDAARADAFGIALFCPSLFIRKHAYLLFFAGGQGDRIITSHEDWDTQDREFADMTVDQAKVCSHDHLELEGAMDAARERAVREVANARRYLPGVANFGFGPDSDSD--ATSDVGARAAPPPR---SRRVWAGIGRTSNDFSEANEPLPLIVSPKCIEPGCTNAGNMGMISCGRCHGDLHRGCGVSGGGNHDDECDSFVGQRCTPCAYPRRGKKRARS 383
BLAST of mRNA_Ecto-sp13_S_contig15815.4286.1 vs. uniprot
Match: D8LBK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK2_ECTSI) HSP 1 Score: 249 bits (636), Expect = 2.950e-71 Identity = 122/257 (47.47%), Postives = 168/257 (65.37%), Query Frame = 2
Query: 239 PVSGDFTDDLINTGLGNPTDFSLTVTSMESGNIPSHVYDQIVAYAKGCTVRFVGSQERGEEKRNLHMQCVGTWALMKTFDTPTKLNAAMRKHIRDKSGIASNDRIKIVVKPLEGKQTFTDMVGYCCKDSGKGHYKTFRKNVTKAEANTALTEYRALQRQTVKDNRVEWGKENFWSILHRFKQENIRALTVSPQLAAQWLVNDGEYLPSYSWICPTGNSGMVSEAADAYWVALLTPKLFTRKHAYVLFFSGGYSGRTT 1009
P +GD DD+I++G+G P DFS+T+ + NI ++++ A+ VR V S ERG+ NLH+Q + T AL K F K AA+R+ +R G + D++KI +K L +QTF+ MVG C KD G+ H+KT K V++ E N ALTEYR LQR V + R E GK+NFW +L RFKQE++R ++VSP W +NDGE +PS++WICPT M + ADAY+ AL++P LFTRK AY+LFFSGG GR +
Sbjct: 127 PTTGDIADDIIDSGVGAPHDFSVTIGNRSGANIKESLFNEGCAWMTKRAVRGVTSMERGDMNGNLHLQGIWTLALKKDFGDSKKEEAALRRKLRVDCGWTAADKVKITIKRLIKQQTFSGMVGDCSKDEGRSHFKTVTKGVSRTEVNIALTEYRTLQRSVVSELRTEIGKKNFWGVLRRFKQEHLRGISVSPVQLISWYINDGEGMPSHTWICPTSAFAMEAARADAYFTALMSPSLFTRKDAYLLFFSGGQGGRVS 383
BLAST of mRNA_Ecto-sp13_S_contig15815.4286.1 vs. uniprot
Match: D7G6N0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N0_ECTSI) HSP 1 Score: 201 bits (510), Expect = 2.080e-53 Identity = 146/459 (31.81%), Postives = 205/459 (44.66%), Query Frame = 2
Query: 188 RGPGRPRAS--AVRSPP-VDPVSGDFTDDLINTGLGNPTDFSLTVTSMESGNIPSHVYDQIVAYAKGCTVRFVGSQERGEEKRNLHMQCVGTWALMKTFDTPTKLNAAMRKHIRDKSGIASNDRIKIVVKPLEGKQTFTDMVGYCCKDSGKGHYKTFRKNVTKAEANTALTEYRALQR----QTVKDNRVEWGKENFWSILHRFKQENIRALTVSPQLAAQWLVNDGEYLPSYSWICPTGNSGMVSEAADAYWVALLTPKLFTRKHAYVLFFSGGYSGRTTSSFALWDNIDREFEELSVDEAKVCSHDRLRVQGAMDLARERAAREMAAYRHEPDGVLRFAVDRDSDEHDPLPAAPGQADCPAPRAVATRERLSTMVRTATDNSAASEPLPLLVYPNCVEAGCTKAGNGGMVTCFSCDGQLHRACGTLVNEDNPEST-----DRRCSSCVSAGKGKRKA 1528
R PGRPR S A R P + P +GD D+I++G+G P DFS+T+ + N+ ++++ A+ VR V S ER + NLH+Q + T +L K F K AA R+ +R G + D K H++ R+ T R+ + +++ + S + R ++VSP W +NDGE +PS++WICPT M + ADAY+ AL++P LFTRK AY+LFFSGG GR +SSF WD DREF E++VD+AK +R+ RTA D S+ASE LPL+V P CVE CTKAGN MV C CDG LHR+CG E++ ++ +CS C + GKRK+
Sbjct: 37 RRPGRPRKSPPASREPSWICPTTGDIAADIIDSGVGAPHDFSVTIGNRSGANMKESLFNEGCAWMTKRAVRGVTSMERRDMNGNLHLQGIWTLSLKKDFGDSKKEEAASRRKLRVDCGWTAAD---------------------------KDHHQAPRQATDIQRTKDVHTSRRSPRACRGPRSISPAPSTAPSSDPSSPSFDLSRSTPRGISVSPVQLISWDINDGEGMPSHTWICPTSAFAMEAARADAYFTALISPSLFTRKDAYLLFFSGGQGGRVSSSFEKWDYQDREFSEMTVDQAKW------------------------------------------------------------------DRIG---RTAEDTSSASEDLPLIVCPKCVEPRCTKAGNIAMVACNLCDGDLHRSCGVRGGEEDADADVVEFQGIQCSRCSTTSHGKRKS 399
BLAST of mRNA_Ecto-sp13_S_contig15815.4286.1 vs. uniprot
Match: A0A6H5JMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG5_9PHAE) HSP 1 Score: 126 bits (316), Expect = 2.500e-28 Identity = 96/313 (30.67%), Postives = 140/313 (44.73%), Query Frame = 2
Query: 320 MESGNIPSHVYDQIVAYAKGCT-VRFVGSQERGEEKRNLHMQCVGTWALMKTFDTPTKLNAAMRKHIRDKSGIASNDRIKIVVKPLEGKQTFTDMVGYCCKDSGKGHYKTFRKNVTKAEANTALTEYRALQRQTVKDNRVEWGKENFWSILHRFKQENIRALTVSPQLAAQWLVNDGEYLPSYSWICPTGNSGMVSEAADAYWVALLTPKLFTRKHAYVLFFSGGYSGRTTSSFALWDNIDREFEELSVDEAKVCSHDRLRVQGAMDLARERAAREMAAYRHEPDGVLRFAVDRDSDEHDPLPAAPGQADCPA 1255
++SG+ S ++ + +G T + + GE +L +QCV T + K + K AA+ K I +G + DR+KI +K L+ QTF G+ H++T KNV++ + N L EYR LQR + VS W + G +PS + + P+G M ADAY +AL+TP+LF RKH Y LFFSGG EFE ++ D+AK CSH R+ ++G +D AR +AA E A R V D E + + D PA
Sbjct: 33 LDSGSGTSRTFNSLTIGTRGRTDIPLRLFDDMGELHGHLQLQCVVTLGIRKQYTDEAKELAALSKKISVDNGWTTADRVKITIKRLQRGQTFNRR--------GQVHFRTHAKNVSRPDINETLAEYRVLQRAV--------------------------GVEVSILQLMTWYIQPGLGMPSPTCVTPSGGWPMCPMRADAYMIALMTPELFPRKHCYSLFFSGGAG---------------EFEGMTHDQAKECSHKRMLLEGRLDQARAKAALEKVAARLSTGAVPGLCQDSSDSEGEQAVEQSRRPDQPA 296 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15815.4286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15815.4286.1 >prot_Ecto-sp13_S_contig15815.4286.1 ID=prot_Ecto-sp13_S_contig15815.4286.1|Name=mRNA_Ecto-sp13_S_contig15815.4286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=409bp MESGNIPSHVYDQIVAYAKGCTVRFVGSQERGEEKRNLHMQCVGTWALMKback to top mRNA from alignment at Ecto-sp13_S_contig15815:174..3369- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15815.4286.1 ID=mRNA_Ecto-sp13_S_contig15815.4286.1|Name=mRNA_Ecto-sp13_S_contig15815.4286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3196bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15815:174..3369- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15815:174..3369- >mRNA_Ecto-sp13_S_contig15815.4286.1 ID=mRNA_Ecto-sp13_S_contig15815.4286.1|Name=mRNA_Ecto-sp13_S_contig15815.4286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1227bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15815:174..3369- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |