mRNA_Ecto-sp13_S_contig1581.4283.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1581.4283.1 vs. uniprot
Match: D8LSD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSD2_ECTSI) HSP 1 Score: 369 bits (947), Expect = 8.990e-123 Identity = 213/225 (94.67%), Postives = 218/225 (96.89%), Query Frame = 1
Query: 1 MKKPCCILTLLALFCQSPQAFVPMSCRQPRSRLASAGSHRLSREARASLVSSCNIEGGGGGRTVVQPTRRRNRGRGCTGKSRTATGGVRELRAGFDLPGLGALLEQSTRHHIPSAFTGGTVGVLGTLSAIQLKINEVKELTACPYCRSTGQLPCATCYGVGSITVLDTVASSNEVTTTTLTXXXXXXXXXXXXXXXXXDGRGVPLFLNKKVSRDPESEIEDVGYA 675
MKKPCCILTLLALFCQSPQAFVP+S QPR+RLASAGSHRLSREARAS +SSCNIEG GG RT VQPTRRRNRGRG TGKSRTATGGVRELRAGFDLPGLGALLEQSTRHHIPSAFTGGTVGVLGTLSAIQLKINEVKELTACPYCRSTGQLPCATC+GVGSI+VLDTVASSNEVTTTTLTXXXXXXXXXXXXXXXXXDGRGVPLFLNKKVSRDPESEIEDVGYA
Sbjct: 1 MKKPCCILTLLALFCQSPQAFVPISSSQPRARLASAGSHRLSREARASPLSSCNIEGRGG-RTAVQPTRRRNRGRGGTGKSRTATGGVRELRAGFDLPGLGALLEQSTRHHIPSAFTGGTVGVLGTLSAIQLKINEVKELTACPYCRSTGQLPCATCFGVGSISVLDTVASSNEVTTTTLTXXXXXXXXXXXXXXXXXDGRGVPLFLNKKVSRDPESEIEDVGYA 224
BLAST of mRNA_Ecto-sp13_S_contig1581.4283.1 vs. uniprot
Match: A0A835YP24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP24_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 4.530e-17 Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 1
Query: 301 GALLEQSTRHHIPSAFTGGTVGVLGTLSAIQLKINEVKELTACPYCRSTGQLPCATCYGVGSITVLDTVASSNEVTTTTLTXXXXXXXXXXXXXXXXXDGRGVPLFLNKKVSRDPESEIEDVG 669
GA + S+ H+ + GG+VGV+GTL I+ K V++ + C YCR +G L C C G G +T+++ V + + +L DGR VP FLN+K SRDPE E+E++G
Sbjct: 6 GAHVGLSSTEHVSAGILGGSVGVIGTLLGIEWKKYNVRQASECCYCRGSGHLVCGQCLGTGELTLVNAVTNKS----ISLGCPTCSGMTYITCINCKGDGRSVPNFLNRKTSRDPEDELEEIG 124
BLAST of mRNA_Ecto-sp13_S_contig1581.4283.1 vs. uniprot
Match: A0A7S1XU55_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU55_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.130e-15 Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 1
Query: 322 TRHHIPSAFTGGTVGVLGTLSAIQLKINEVKELTACPYCRSTGQLPCATCYGVGSITVLDTVASSNEVTTTTLTXXXXXXXXXXXXXXXXXDGRGVPLFLNKKVSRDPESEIEDVGYA 675
T + AF GG GVLG+L AI+ K ++ + +ACPYC G+LPCA C+G G +T+ DT ++ XXXXXXXXXXXXXXX R VPL L+++V+RDPE E+ED+G A
Sbjct: 57 TADDLACAFAGGATGVLGSLFAIEYKKSKQRARSACPYCVGEGRLPCAVCWGTGKVTLADTGVEADXX--------XXXXXXXXXXXXXXXXXRMVPLMLDRRVARDPEDELEDIGLA 166
BLAST of mRNA_Ecto-sp13_S_contig1581.4283.1 vs. uniprot
Match: A0A7R9U8V3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8V3_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.950e-14 Identity = 59/119 (49.58%), Postives = 80/119 (67.23%), Query Frame = 1
Query: 319 STRHHIPSAFTGGTVGVLGTLSAIQLKINEVKELTACPYCRSTGQLPCATCYGVGSITVLDTVASSNEVTTTTLTXXXXXXXXXXXXXXXXXDGRGVPLFLNKKVSRDPESEIEDVGYA 675
+T + AF GGTVGV+G+L AI+++ + ++ ACPYC TG+L CA C+G G + + S V + XXXXXXXXXXXXXXXXX R VPL L+++ SRDPE E+E++G A
Sbjct: 42 NTAGDVACAFAGGTVGVMGSLVAIEIRKLQQRKRNACPYCVGTGRLTCAVCWGAGKVEIAGAQGSQTVV----VDXXXXXXXXXXXXXXXXXXXRLVPLMLDRRASRDPEDELEEIGLA 156
BLAST of mRNA_Ecto-sp13_S_contig1581.4283.1 vs. uniprot
Match: A0A6V1KEG1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KEG1_HETAK) HSP 1 Score: 77.4 bits (189), Expect = 7.020e-13 Identity = 61/110 (55.45%), Postives = 69/110 (62.73%), Query Frame = 1
Query: 340 SAFTGGTVGVLGTLSAIQLKINEVKELTACPYCRSTGQLPCATCYGVGSITVLDTVASSNEVTTTTLTXXXXXXXXXXXXXXXXXDGRGVPLFLNKKVSRDPESEIEDVG 669
+ F GG +GV GTL A+ K +V E CPYC G+L C C G G +L A XXXXXXXXXXXXXXXXXDGR VPL LN+K SRDPESE+EDVG
Sbjct: 73 TGFVGGAIGVTGTLIALDSKKVKVAERAKCPYCTGDGRLTCVRCLGAG---MLPAAADGGAA----CXXXXXXXXXXXXXXXXXXDGRAVPLMLNRKASRDPESELEDVG 175
BLAST of mRNA_Ecto-sp13_S_contig1581.4283.1 vs. uniprot
Match: A0A7S2WEZ4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEZ4_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 3.800e-12 Identity = 69/141 (48.94%), Postives = 83/141 (58.87%), Query Frame = 1
Query: 259 GVRELRAGFDL-PGLGALLEQSTRHHIPSAFTGGTVGVLGTLSAIQLKINEVKELTACPYCRSTGQLPCATCYGVGSITVLDTVASSNEVTT---TTLTXXXXXXXXXXXXXXXXXDGRGVPLFLNKKVSRDPESEIEDVG 669
GVR L G + P GA + + F GG+VGVLG + AI++K E K+ + CPYC G L CA CYG G + V T S V TXXXXXXXXXXXXXXXXX P L+++VSRDPESE+EDVG
Sbjct: 37 GVRRLDHGLAVSPAQGAA-------DVLAGFAGGSVGVLGAIFAIEMKKRETKKKSECPYCNGNGHLTCAKCYGSGFMVV--THVSDQGVPLGQPVRCTXXXXXXXXXXXXXXXXXXXXXXPTILDQRVSRDPESELEDVG 168
BLAST of mRNA_Ecto-sp13_S_contig1581.4283.1 vs. uniprot
Match: A0A8J2WYK4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYK4_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 2.010e-10 Identity = 42/116 (36.21%), Postives = 59/116 (50.86%), Query Frame = 1
Query: 322 TRHHIPSAFTGGTVGVLGTLSAIQLKINEVKELTACPYCRSTGQLPCATCYGVGSITVLDTVASSNEVTTTTLTXXXXXXXXXXXXXXXXXDGRGVPLFLNKKVSRDPESEIEDVG 669
T + SAF GGTVG +G++ AI+ K +VK+ CPYC TG + CA C G G +T + T T GR +P L+ +VSRDPE+E+E++G
Sbjct: 52 TAEGLASAFLGGTVGAVGSVVAIEAKRVKVKKSKQCPYCDGTGAIACAACLGTG-LTDGEPCRLCGGRTVHTCENCKGR-------------GRFIPTMLDARVSRDPETELEEIG 153
BLAST of mRNA_Ecto-sp13_S_contig1581.4283.1 vs. uniprot
Match: A0A7S1TK16_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TK16_9RHOD) HSP 1 Score: 56.2 bits (134), Expect = 7.650e-6 Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 1
Query: 334 IPSAFTGGTVGVLGTLSAIQLKINEVKELTACPYCRSTGQLPCATCYGVGSITVLDTVASS 516
I +AF GGTVGV+G+L A +L+ KE CPYC TG+L C C G G + + + A +
Sbjct: 26 IAAAFAGGTVGVMGSLIAWELRQLRDKESKQCPYCLGTGRLRCGRCLGQGELLISEVGAQA 86
BLAST of mRNA_Ecto-sp13_S_contig1581.4283.1 vs. uniprot
Match: A0A7S3RTS6_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RTS6_EMIHU) HSP 1 Score: 55.8 bits (133), Expect = 3.530e-5 Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1
Query: 340 SAFTGGTVGVLGTLSAIQLKINEVKELTACPYCRSTGQLPCATCYG 477
+AFTGG+VGV+GT+ + +K ++VK+ C YC TGQ+ C CYG
Sbjct: 42 AAFTGGSVGVIGTVISAFVKRDQVKDRLKCTYCNGTGQIVCGRCYG 87
BLAST of mRNA_Ecto-sp13_S_contig1581.4283.1 vs. uniprot
Match: A0A7S3W3Q7_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W3Q7_EMIHU) HSP 1 Score: 55.8 bits (133), Expect = 9.280e-5 Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1
Query: 340 SAFTGGTVGVLGTLSAIQLKINEVKELTACPYCRSTGQLPCATCYG 477
+AFTGG+VGV+GT+ + +K ++VK+ C YC TGQ+ C CYG
Sbjct: 89 AAFTGGSVGVIGTVISAFVKRDQVKDRLKCTYCNGTGQIVCGRCYG 134 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1581.4283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1581.4283.1 >prot_Ecto-sp13_S_contig1581.4283.1 ID=prot_Ecto-sp13_S_contig1581.4283.1|Name=mRNA_Ecto-sp13_S_contig1581.4283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=226bp MKKPCCILTLLALFCQSPQAFVPMSCRQPRSRLASAGSHRLSREARASLVback to top mRNA from alignment at Ecto-sp13_S_contig1581:12133..14953+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1581.4283.1 ID=mRNA_Ecto-sp13_S_contig1581.4283.1|Name=mRNA_Ecto-sp13_S_contig1581.4283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2821bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1581:12133..14953+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1581:12133..14953+ >mRNA_Ecto-sp13_S_contig1581.4283.1 ID=mRNA_Ecto-sp13_S_contig1581.4283.1|Name=mRNA_Ecto-sp13_S_contig1581.4283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=678bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1581:12133..14953+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |