mRNA_Ecto-sp13_S_contig1581.4281.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1581.4281.1
Unique NamemRNA_Ecto-sp13_S_contig1581.4281.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1581.4281.1 vs. uniprot
Match: A0A6H5L1M9_9PHAE (PlsC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1M9_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 7.260e-74
Identity = 135/144 (93.75%), Postives = 136/144 (94.44%), Query Frame = 1 
Query:    1 EILEALDQDDVPEAGAALDPSRRAASLAATAVTYLAAACAGKALVSFSRREGVAVWALVAGAVAYVFLSTVFVFYVYARKCFSAPRRVGVRGGGGAGTVSSGLGPTDDGVAVNGGEGRGGGTVELSRGGEGRSREGESDVTDQM 432
            EILEALDQ +VPEAGAALDPSRRAASLAATA TYLAAA AGKALVSFSRREGVAVWALVAGAVAYVFLSTVFVFYVYARKCFSAPRRVGVRGGGGAGTVS GLG TDDGVAVNGGEGRG GT ELSRGGEGR REGESDVTDQM
Sbjct:  276 EILEALDQANVPEAGAALDPSRRAASLAATAFTYLAAARAGKALVSFSRREGVAVWALVAGAVAYVFLSTVFVFYVYARKCFSAPRRVGVRGGGGAGTVSGGLGLTDDGVAVNGGEGRGVGTAELSRGGEGRRREGESDVTDQM 419
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BLAST of mRNA_Ecto-sp13_S_contig1581.4281.1 vs. uniprot
Match: D8LSD1_ECTSI (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD1_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 1.230e-59
Identity = 120/144 (83.33%), Postives = 121/144 (84.03%), Query Frame = 1 
Query:    1 EILEALDQDDVPEAGAALDPSRRAASLAATAVTYLAAACAGKALVSFSRREGVAVWALVAGAVAYVFLSTVFVFYVYARKCFSAPRRVGVRGGGGAGTVSSGLGPTDDGVAVNGGEGRGGGTVELSRGGEGRSREGESDVTDQM 432
            EILEALDQDDVPEAGAALDPSRRAASLAATA TYLAAA A KALVSFSRREGVAVWALVAGAVAYVFLSTVFVFYVYARKCFSAPRRVGVRGGGGAGTVS GLG TDDGVAVNG EG G                GESDVT+QM
Sbjct:  318 EILEALDQDDVPEAGAALDPSRRAASLAATAFTYLAAARAVKALVSFSRREGVAVWALVAGAVAYVFLSTVFVFYVYARKCFSAPRRVGVRGGGGAGTVSGGLGLTDDGVAVNGWEGHGXXXXXXXXXXXXXXXXGESDVTEQM 461
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1581.4281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1M9_9PHAE7.260e-7493.75PlsC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LSD1_ECTSI1.230e-5983.331-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1581contigEcto-sp13_S_contig1581:4665..5108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score203.8
Seed ortholog evalue5.7e-50
Seed eggNOG ortholog2880.D8LSD1
Model size444
KEGG rclassRC00004,RC00037,RC00039
KEGG koko:K00655,ko:K13509
KEGG ReactionR02241,R09381
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04072,ko04975,map00561,map00564,map01100,map01110,map04072,map04975
KEGG ModuleM00089
Hectar predicted targeting categorysignal anchor
Exons1
EggNOG free text desc.1-acylglycerol-3-phosphate O-acyltransferase activity
EggNOG OGsCOG0204@1,KOG2848@2759
EC2.3.1.51
Cds size444
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462836.227222-CDS-Ecto-sp13_S_contig1581:4664..51081681462836.227222-CDS-Ecto-sp13_S_contig1581:4664..5108Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1581 4665..5108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1581.4281.1prot_Ecto-sp13_S_contig1581.4281.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1581 4665..5108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1581.4281.1

>prot_Ecto-sp13_S_contig1581.4281.1 ID=prot_Ecto-sp13_S_contig1581.4281.1|Name=mRNA_Ecto-sp13_S_contig1581.4281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
EILEALDQDDVPEAGAALDPSRRAASLAATAVTYLAAACAGKALVSFSRR
EGVAVWALVAGAVAYVFLSTVFVFYVYARKCFSAPRRVGVRGGGGAGTVS
SGLGPTDDGVAVNGGEGRGGGTVELSRGGEGRSREGESDVTDQMDEG*
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mRNA from alignment at Ecto-sp13_S_contig1581:4665..5108-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1581.4281.1 ID=mRNA_Ecto-sp13_S_contig1581.4281.1|Name=mRNA_Ecto-sp13_S_contig1581.4281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1581:4665..5108- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAATTCTGGAGGCCCTGGACCAGGACGACGTACCAGAGGCAGGGGCCGC
CCTCGACCCTTCCCGCCGCGCGGCCAGCCTCGCCGCGACGGCCGTCACCT
ACTTGGCGGCGGCGTGCGCGGGGAAGGCGCTGGTGAGCTTCTCGCGGAGG
GAGGGCGTGGCCGTCTGGGCGCTGGTCGCCGGGGCCGTCGCGTACGTCTT
CCTCTCGACGGTGTTCGTTTTCTACGTGTACGCGAGGAAGTGCTTCAGTG
CTCCGCGCCGTGTTGGTGTTCGCGGCGGGGGTGGTGCGGGGACGGTGTCT
AGCGGGTTAGGGCCAACAGACGACGGGGTGGCGGTGAATGGTGGGGAGGG
ACGCGGCGGTGGCACCGTGGAGCTCTCGAGAGGGGGAGAGGGCCGCAGCC
GCGAGGGCGAGTCAGACGTGACAGATCAGATGGATGAAGGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1581:4665..5108-

>mRNA_Ecto-sp13_S_contig1581.4281.1 ID=mRNA_Ecto-sp13_S_contig1581.4281.1|Name=mRNA_Ecto-sp13_S_contig1581.4281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1581:4665..5108- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAATTCTGGAGGCCCTGGACCAGGACGACGTACCAGAGGCAGGGGCCGC
CCTCGACCCTTCCCGCCGCGCGGCCAGCCTCGCCGCGACGGCCGTCACCT
ACTTGGCGGCGGCGTGCGCGGGGAAGGCGCTGGTGAGCTTCTCGCGGAGG
GAGGGCGTGGCCGTCTGGGCGCTGGTCGCCGGGGCCGTCGCGTACGTCTT
CCTCTCGACGGTGTTCGTTTTCTACGTGTACGCGAGGAAGTGCTTCAGTG
CTCCGCGCCGTGTTGGTGTTCGCGGCGGGGGTGGTGCGGGGACGGTGTCT
AGCGGGTTAGGGCCAACAGACGACGGGGTGGCGGTGAATGGTGGGGAGGG
ACGCGGCGGTGGCACCGTGGAGCTCTCGAGAGGGGGAGAGGGCCGCAGCC
GCGAGGGCGAGTCAGACGTGACAGATCAGATGGATGAAGGGTAG
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