prot_Ecto-sp13_S_contig15807.4279.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15807.4279.1
Unique Nameprot_Ecto-sp13_S_contig15807.4279.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length384
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15807.4279.1 vs. uniprot
Match: D7G990_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G990_ECTSI)

HSP 1 Score: 363 bits (933), Expect = 1.780e-121
Identity = 220/247 (89.07%), Postives = 231/247 (93.52%), Query Frame = 0 
Query:    1 HYGLVLPYGSGLTKELQAATLQLREDGTLIDIEEAYLDPSAVCVPVTSSEEEASNMTISDVSGVFFVLGLFVVAATVSWCFRRSPWAKRARERRRLEKGGAAEQSVMDSYAKMSRGQQKAFAMQATVNLLQHSRELSASSKTLMEGISEVAKKAPDAAGXXXXXXXXXXXXXXXXXXXXXXXXRAAPTEANFRREMAEGRPIVGIGGGVVDSGRDFTRQAPSLSGFLSRLPWRRGGG-AGENGGNPT 246
            HYGLVLPYGSGLT+ELQAATLQLREDGTL DIEE YLDPSAVCVPVT+SEEE+SNMT+SDVSGVFFVLG FV+AATVSWCFRRSPWAKRA+ERRRLEKGGAAEQSVMDSYAKMSRGQQKAFAMQATVNLLQHSRELSASSKTLMEGISE AKK PDAAGXXXXXXXXXXXXXXXXXXXXXXX RAAP EA FRREMAEGRP+VGIGGG+ DS + FTR+APSLSG LSRLP RRGGG A  +GGNPT
Sbjct:   61 HYGLVLPYGSGLTEELQAATLQLREDGTLSDIEETYLDPSAVCVPVTTSEEESSNMTVSDVSGVFFVLGFFVIAATVSWCFRRSPWAKRAKERRRLEKGGAAEQSVMDSYAKMSRGQQKAFAMQATVNLLQHSRELSASSKTLMEGISEGAKKVPDAAGXXXXXXXXXXXXXXXXXXXXXXX-RAAPGEAEFRREMAEGRPVVGIGGGMGDSDQGFTRRAPSLSGLLSRLPGRRGGGGAXGDGGNPT 306
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BLAST of mRNA_Ecto-sp13_S_contig15807.4279.1 vs. uniprot
Match: A0A6H5JES6_9PHAE (PBPe domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES6_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.080e-11
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0 
Query:   19 ATLQLREDGTLIDIEEAYLDPSAVCVPVTSSEEEASNMTIS 59
            ATLQLREDGTLIDIEE+YLDPS VCVPVT+SEEE+SNMTIS
Sbjct:  441 ATLQLREDGTLIDIEESYLDPSVVCVPVTTSEEESSNMTIS 481
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15807.4279.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G990_ECTSI1.780e-12189.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JES6_9PHAE1.080e-1190.24PBPe domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.190.10coord: 3..54
e-value: 2.1E-9
score: 38.6
NoneNo IPR availableGENE3D1.10.287.70coord: 55..77
e-value: 2.1E-9
score: 38.6
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 82..384
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..60
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 61..81
NoneNo IPR availableTMHMMTMhelixcoord: 64..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15807contigEcto-sp13_S_contig15807:2..4010 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15807.4279.1mRNA_Ecto-sp13_S_contig15807.4279.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15807 2..4010 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15807.4279.1 ID=prot_Ecto-sp13_S_contig15807.4279.1|Name=mRNA_Ecto-sp13_S_contig15807.4279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=384bp
HYGLVLPYGSGLTKELQAATLQLREDGTLIDIEEAYLDPSAVCVPVTSSE
EEASNMTISDVSGVFFVLGLFVVAATVSWCFRRSPWAKRARERRRLEKGG
AAEQSVMDSYAKMSRGQQKAFAMQATVNLLQHSRELSASSKTLMEGISEV
AKKAPDAAGAAAAAAPPNPATGDAGGGGEDGGRRAAPTEANFRREMAEGR
PIVGIGGGVVDSGRDFTRQAPSLSGFLSRLPWRRGGGAGENGGNPTREPD
QRRRRRDSGRGSGSGGLNLNPDPMMYLVGGDRESESWSSTGSPVPVPPPH
SPRQGRRSLVVGASSSNRAVKRGQGVGGAATPPATAASTGAAAKIVSTVH
DGEDAGGMERESNAPRGLVHPVAGSGSAGAGTAA
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