mRNA_Ecto-sp13_S_contig15805.4278.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig15805.4278.1
Unique Name	mRNA_Ecto-sp13_S_contig15805.4278.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig15805.4278.1 vs. uniprot
Match: D7FKH7_ECTSI (40S ribosomal protein S3a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH7_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 2.230e-42
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query:  556 GKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDL 780
            GKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDL
Sbjct:    4 GKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDL 78

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BLAST of mRNA_Ecto-sp13_S_contig15805.4278.1 vs. uniprot
Match: A0A8D0YTB0_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D0YTB0_PIG)

HSP 1 Score: 148 bits (373), Expect = 4.430e-42
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 1

Query:  550 VAGKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDL 780
              GKTNKK GRKGNKKKTVDP TLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLN DEDL
Sbjct:    2 AVGKTNKKAGRKGNKKKTVDPFTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNNDEDL 78

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BLAST of mRNA_Ecto-sp13_S_contig15805.4278.1 vs. uniprot
Match: A0A835Z1K4_9STRA (40S ribosomal protein S3a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K4_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.040e-28
Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 1

Query:  550 VAGKTNKKGGRKGN-KKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADED 777
              GKT KK G+KG  KKKTVDP T KEWYDIKAPS F VRN GKTL+TRT GTKIASEGLKGRVFE SLGDLN DE+
Sbjct:    2 AVGKTQKKIGKKGKGKKKTVDPFTRKEWYDIKAPSTFAVRNAGKTLITRTTGTKIASEGLKGRVFEVSLGDLNNDEE 78

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BLAST of mRNA_Ecto-sp13_S_contig15805.4278.1 vs. uniprot
Match: A0A8C0S9S5_CANLF (Uncharacterized protein n=3 Tax=Laurasiatheria TaxID=314145 RepID=A0A8C0S9S5_CANLF)

HSP 1 Score: 107 bits (267), Expect = 4.130e-26
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 1

Query:  571 KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADE 774
            KGG+KG KKK VDP + K+WYD+KAP++F +RN GKTLVTRT+GTKIAS+GLKGRVFE SL DL  DE
Sbjct:   11 KGGKKGTKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE 78

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BLAST of mRNA_Ecto-sp13_S_contig15805.4278.1 vs. uniprot
Match: A0A2K5KAX5_COLAP (Ribosomal protein S3A n=2 Tax=Cercopithecidae TaxID=9527 RepID=A0A2K5KAX5_COLAP)

HSP 1 Score: 106 bits (265), Expect = 6.900e-26
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 1

Query:  571 KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADE 774
            KGG+KG KKK VDP + K+WYD+KAP++F +RN GKTLVTRT+GTKIAS+GLKGRVFE SL DL  DE
Sbjct:   11 KGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE 78

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BLAST of mRNA_Ecto-sp13_S_contig15805.4278.1 vs. uniprot
Match: D6RI02_HUMAN (40S ribosomal protein S3a n=8 Tax=Amniota TaxID=32524 RepID=D6RI02_HUMAN)

HSP 1 Score: 106 bits (265), Expect = 7.100e-26
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 1

Query:  571 KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADE 774
            KGG+KG KKK VDP + K+WYD+KAP++F +RN GKTLVTRT+GTKIAS+GLKGRVFE SL DL  DE
Sbjct:   11 KGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE 78

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BLAST of mRNA_Ecto-sp13_S_contig15805.4278.1 vs. uniprot
Match: A0A2K5QLS4_CEBIM (Uncharacterized protein n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A2K5QLS4_CEBIM)

HSP 1 Score: 106 bits (265), Expect = 7.100e-26
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 1

Query:  571 KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADE 774
            KGG+KG KKK VDP + K+WYD+KAP++F +RN GKTLVTRT+GTKIAS+GLKGRVFE SL DL  DE
Sbjct:   11 KGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE 78

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BLAST of mRNA_Ecto-sp13_S_contig15805.4278.1 vs. uniprot
Match: UPI001E25F1EA (40S ribosomal protein S3a-like isoform X1 n=2 Tax=Leopardus geoffroyi TaxID=46844 RepID=UPI001E25F1EA)

HSP 1 Score: 106 bits (265), Expect = 7.100e-26
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 1

Query:  571 KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADE 774
            KGG+KG KKK VDP + K+WYD+KAP++F +RN GKTLVTRT+GTKIAS+GLKGRVFE SL DL  DE
Sbjct:   11 KGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLENDE 78

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BLAST of mRNA_Ecto-sp13_S_contig15805.4278.1 vs. uniprot
Match: UPI001E3F36A4 (40S ribosomal protein S3a/S1 n=1 Tax=Streptococcus agalactiae TaxID=1311 RepID=UPI001E3F36A4)

HSP 1 Score: 106 bits (265), Expect = 7.100e-26
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 1

Query:  571 KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADE 774
            KGG+KG KKK VDP + K+WYD+KAP++F +RN GKTLVTRT+GTKIAS+GLKGRVFE SL DL  DE
Sbjct:   13 KGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE 80

[Close]

BLAST of mRNA_Ecto-sp13_S_contig15805.4278.1 vs. uniprot
Match: A0A2K6GQR3_PROCO (Uncharacterized protein n=1 Tax=Propithecus coquereli TaxID=379532 RepID=A0A2K6GQR3_PROCO)

HSP 1 Score: 107 bits (267), Expect = 7.150e-26
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 1

Query:  571 KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADE 774
            KGG+KG KKK VDP + K+WYD+KAP++F +RN GKTLVTRT+GTKIAS+GLKGRVFE SL DL  DE
Sbjct:   11 KGGKKGAKKKVVDPFSKKDWYDVKAPAVFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE 78

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig15805.4278.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig15805.4278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FKH7_ECTSI	2.230e-42	100.00	40S ribosomal protein S3a n=2 Tax=Ectocarpus TaxID...	[more]
A0A8D0YTB0_PIG	4.430e-42	93.51	Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9...	[more]
A0A835Z1K4_9STRA	3.040e-28	77.92	40S ribosomal protein S3a n=1 Tax=Tribonema minus ...	[more]
A0A8C0S9S5_CANLF	4.130e-26	72.06	Uncharacterized protein n=3 Tax=Laurasiatheria Tax...	[more]
A0A2K5KAX5_COLAP	6.900e-26	72.06	Ribosomal protein S3A n=2 Tax=Cercopithecidae TaxI...	[more]
D6RI02_HUMAN	7.100e-26	72.06	40S ribosomal protein S3a n=8 Tax=Amniota TaxID=32...	[more]
A0A2K5QLS4_CEBIM	7.100e-26	72.06	Uncharacterized protein n=2 Tax=Boreoeutheria TaxI...	[more]
UPI001E25F1EA	7.100e-26	72.06	40S ribosomal protein S3a-like isoform X1 n=2 Tax=...	[more]
UPI001E3F36A4	7.100e-26	72.06	40S ribosomal protein S3a/S1 n=1 Tax=Streptococcus...	[more]
A0A2K6GQR3_PROCO	7.150e-26	72.06	Uncharacterized protein n=1 Tax=Propithecus coquer...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig15805	contig	Ecto-sp13_S_contig15805:932..3098 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	781
Hectar predicted targeting category	signal peptide
Exons	4
Cds size	546

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig15805.4278.1	prot_Ecto-sp13_S_contig15805.4278.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig15805 1093..3024 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462835.9478397-UTR-Ecto-sp13_S_contig15805:931..1092	1681462835.9478397-UTR-Ecto-sp13_S_contig15805:931..1092	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig15805 932..1092 +
1681462836.001749-UTR-Ecto-sp13_S_contig15805:3024..3098	1681462836.001749-UTR-Ecto-sp13_S_contig15805:3024..3098	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig15805 3025..3098 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462835.9579508-CDS-Ecto-sp13_S_contig15805:1092..1191	1681462835.9579508-CDS-Ecto-sp13_S_contig15805:1092..1191	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15805 1093..1191 +
1681462835.967925-CDS-Ecto-sp13_S_contig15805:1236..1578	1681462835.967925-CDS-Ecto-sp13_S_contig15805:1236..1578	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15805 1237..1578 +
1681462835.9758906-CDS-Ecto-sp13_S_contig15805:2358..2462	1681462835.9758906-CDS-Ecto-sp13_S_contig15805:2358..2462	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15805 2359..2462 +
1681462835.9862516-CDS-Ecto-sp13_S_contig15805:3023..3024	1681462835.9862516-CDS-Ecto-sp13_S_contig15805:3023..3024	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15805 3024..3024 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig15805:932..3098+
coding sequence from alignment at Ecto-sp13_S_contig15805:932..3098+

protein sequence of mRNA_Ecto-sp13_S_contig15805.4278.1

>prot_Ecto-sp13_S_contig15805.4278.1 ID=prot_Ecto-sp13_S_contig15805.4278.1|Name=mRNA_Ecto-sp13_S_contig15805.4278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=182bp
MPFFAWWWMHNVGLASTELSDAHAIQTPGGRWWRRCHHTKMSAVVCAGRV
ALISSSLLPPRSMEKRWPRQVAKHHQTTGSSTLPCPLSQLLSFAGGFRLF
LSPAVLRKTPVLLLLLLLLLLLSLYLSLLCCRQDEQEGRPKGQQEEDGGP
HDPQGVVRHQGALHLPSAQPGQDSCDAYQGN*

mRNA from alignment at Ecto-sp13_S_contig15805:932..3098+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig15805.4278.1 ID=mRNA_Ecto-sp13_S_contig15805.4278.1|Name=mRNA_Ecto-sp13_S_contig15805.4278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2167bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15805:932..3098+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTCCCCCTCCTCGCACTCGGCGCAACCATGGCGATCGGTGAGTCCATG
CAAGGATAGCACGCTGATGGAGCTTGGGGTCAGCCGGGATTTGCGGTGGA
AATGGTGCCTGAGATTTCTTATGGCCCGCGATTGCCTTTGCTGGATTAGG
GACCCATCCCGATGCCTTTTTTCGCTTGGTGGTGGATGCACAACGTTGGA
CTTGCATCGACGGAGCTGTCAGATGCACACGCCATACAGACACCGGGAGG
AAGATGGTGGAGGTGTCAAGTGTGTGCCTTGTTCGCTTTGCCGTTTCCTC
GCGCACGGCGTTGTCATCACACGAAAATGTCCGCCGTAGTGTGCGCGGGG
CGTGTGGCTCTCATTTCTTCATCGCTGCTACCGCCGCGCAGCATGGAGAA
AAGATGGCCACGACAAGTGGCCAAACACCATCAGACAACAGGGTCGTCCA
CACTGCCATGCCCTCTTTCACAGCTGCTATCCTTTGCTGGTGGATTTCGG
CTCTTTCTTTCCCCCGCTGTTCTGAGGAAAACACCTGTGCTGCTGCTGCT
CCTGCTGCTCCTGCTGCTGCTGTCACTTTATCTCTCCTTATTGTGTTGCA
GGCAAGACGAACAAGAAGGGCGGCCGAAAGGGCAACAAGAAGAAGACGTG
AGTTTGTTGGGTTGGGAGTGTTGGGAGAAAGTCGTGTGAGTGGGTGCTGA
AAGGCTTTTGGTGTCGTCGGCAATCTTTGGCCAATTGATTTGGACGCCAG
ACGTACCCATCCTGCTGTCGCAGGTGCTGCTTAAAGGTATGGATTGCATG
CTGTGCATTGAAATCATCTACTGCTGTGCGTTATGTCGTTATTATACTGG
ATGGAAAAGACACGAAACTGTGGCAAAAGTTGCCTCTAAATTGGAACCAG
GTCTGCTGGTTGCACGCCAGTCGACCACACGTTGTTGCGGCGGCTGTAAG
GCAGCAGCTACCTACTGCTACCTTGTTGACGTTTGTGCTCTTTGTCTTAA
CTCTGCGCCGTCTGCGTTTTGCCGTGTTGCCGCGGGTGAGTACCGCAGTA
CCCAAGAATATGGCCCATCTGAGAACGCGCAAGCGTCGGTTCCTCGATTT
GATTTGTGCCTTACAACATTACATGACCCACTCCTTACACAGCCTTCACA
TACGCTGGCGTCAGGGCTGGATAGGGTGGCGCATGGCTGGCAGAGGATGG
CGTTAGAAAACTGAAGGCATGTCTCCCTCCGCCCTTTTTCGGATACACGC
GTGGAACACCGAAAACTGTCCCTTTGCAGGCCGGCCTCCTCCGGGTGCAA
AACTGGTCGCTCGCGTTCCCGATAATTGACCAAAATTCCCGGTAACAGTT
TTCCAGCATCCGGCATAAAGTAGTCACTCTCGAAAGCGTTTCGCTTGTTG
TGTTTCTTTGTGGCTTGCCGACGGCAGGGTGGACCCCATGACCCTCAAGG
AGTGGTACGACATCAAGGCGCCCTCCATCTTCCAAGTGCGCAACCCGGGC
AAGACTCTTGTGACGCGTACCAAGGGAACTAGTGAGTTGACCTCTCTCTT
TTCCTCTTGTTGCATCCCGCTCCGAAGAAGAGGATATATTATAGGAAAAA
GATTACGAACAACTGCTGTCATACTCGTGTGTGTCTTTACTTTTCTAATT
GTTTACTTTGCGGGCATCATACGCGTGGCGGTCTCCGCCGGCCTGGCGGC
GACCGTACGATCGAGCGAATCTAGCTCACCGGGTGTTGCTTGTCTCTGCG
GATGAGTTGAGTCGCACAAGCTCAATCGTCGTGAGCCCTATGCATCGCTT
GGAACGTGCAGTTTCCTACCCCCCTTGTGTCCTTCAGTGGTTTGCGGCCT
GTACTCACGTGAATCCACGCTCTTTGGCTTCCAGTCCGTGACTGAAAAGG
TTTGTGTAACAACTGGCTACCACCGCAGTCGTATGTGCCGAACACCTACG
GGACAGGTGGTCAGTCCCTGGCGCTTTCTGTTGTCATTCTCATCCCCCCC
ATCTGTTGTGGAAAATTTCTCGTTCGCGCTTGGTTGCTTTTACTGTTGTT
ACCGCTGCTGCTGCCGCCACCGCCGGTCGCTGGTCGGAACAGAGATCGCT
TCGGAGGGGCTTAAGGGGCGTGTGTTCGAGTTCTCTCTCGGAGACCTTAA
CGCCGACGAGGACCTGG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15805:932..3098+

>mRNA_Ecto-sp13_S_contig15805.4278.1 ID=mRNA_Ecto-sp13_S_contig15805.4278.1|Name=mRNA_Ecto-sp13_S_contig15805.4278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15805:932..3098+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTTTTTTCGCTTGGTGGTGGATGCACAACGTTGGACTTGCATCGAC
GGAGCTGTCAGATGCACACGCCATACAGACACCGGGAGGAAGATGGTGGC
GGCGTTGTCATCACACGAAAATGTCCGCCGTAGTGTGCGCGGGGCGTGTG
GCTCTCATTTCTTCATCGCTGCTACCGCCGCGCAGCATGGAGAAAAGATG
GCCACGACAAGTGGCCAAACACCATCAGACAACAGGGTCGTCCACACTGC
CATGCCCTCTTTCACAGCTGCTATCCTTTGCTGGTGGATTTCGGCTCTTT
CTTTCCCCCGCTGTTCTGAGGAAAACACCTGTGCTGCTGCTGCTCCTGCT
GCTCCTGCTGCTGCTGTCACTTTATCTCTCCTTATTGTGTTGCAGGCAAG
ACGAACAAGAAGGGCGGCCGAAAGGGCAACAAGAAGAAGACGGTGGACCC
CATGACCCTCAAGGAGTGGTACGACATCAAGGCGCCCTCCATCTTCCAAG
TGCGCAACCCGGGCAAGACTCTTGTGACGCGTACCAAGGGAACTAA