mRNA_Ecto-sp13_S_contig15802.4277.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15802.4277.1
Unique NamemRNA_Ecto-sp13_S_contig15802.4277.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15802.4277.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 1.430e-74
Identity = 117/144 (81.25%), Postives = 127/144 (88.19%), Query Frame = 1 
Query:    1 MKGFLLGQAITLLHVSGVSAALASGEEHGNNETGFGAVRPRCNSLRSGCVQNSEQPDQTNEAQRRRLQVTDSCELWECGAGYADIAGQCLNISGRKLFSDDRTDDDFLXXXXXXXXXDDYTSEIPSCSQAVCCERVNTPGPIPE 432
            MKGFLLGQAI LLHVSG S ALASG+E+GNNETGFGAVRPRC SLRSGCVQN+E+P+ +N A+ RRLQV DSCELWECGAGYA+I G+CLNISGR+LFSDDRTDDDFL        XDDYTSEIPSCSQAVCCERVNTPGPIPE
Sbjct:    1 MKGFLLGQAIALLHVSGGSVALASGKEYGNNETGFGAVRPRCISLRSGCVQNNEEPEVSNGARPRRLQVIDSCELWECGAGYANITGECLNISGRRLFSDDRTDDDFLSDDEYTVDXDDYTSEIPSCSQAVCCERVNTPGPIPE 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15802.4277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JC43_9PHAE1.430e-7481.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15802contigEcto-sp13_S_contig15802:171..2716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size564
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_003730.1
Cds size564
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462835.899686-CDS-Ecto-sp13_S_contig15802:170..3281681462835.899686-CDS-Ecto-sp13_S_contig15802:170..328Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15802 171..328 -
1681462835.9129558-CDS-Ecto-sp13_S_contig15802:1631..18261681462835.9129558-CDS-Ecto-sp13_S_contig15802:1631..1826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15802 1632..1826 -
1681462835.9211442-CDS-Ecto-sp13_S_contig15802:2505..27161681462835.9211442-CDS-Ecto-sp13_S_contig15802:2505..2716Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15802 2506..2716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15802.4277.1prot_Ecto-sp13_S_contig15802.4277.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15802 171..2716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15802.4277.1

>prot_Ecto-sp13_S_contig15802.4277.1 ID=prot_Ecto-sp13_S_contig15802.4277.1|Name=mRNA_Ecto-sp13_S_contig15802.4277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=188bp
MKGFLLGQAITLLHVSGVSAALASGEEHGNNETGFGAVRPRCNSLRSGCV
QNSEQPDQTNEAQRRRLQVTDSCELWECGAGYADIAGQCLNISGRKLFSD
DRTDDDFLTDDEYTVDDDDYTSEIPSCSQAVCCERVNTPGPIPEPNAPTP
SPTPTATTPPTPTPSPTLPQAPTPALTPVPTPAPTPSS
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mRNA from alignment at Ecto-sp13_S_contig15802:171..2716-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15802.4277.1 ID=mRNA_Ecto-sp13_S_contig15802.4277.1|Name=mRNA_Ecto-sp13_S_contig15802.4277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15802:171..2716- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAGGCTTTCTTCTTGGACAAGCCATCACTCTACTCCATGTCTCGGG
GGTAAGTGCTGCTTTAGCCTCCGGAGAAGAGCACGGCAATAATGAAACGG
GGTTCGGCGCCGTGCGTCCGCGCTGCAATTCTCTCCGTAGCGGATGCGTA
CAAAACAGCGAGCAGCCGGATCAGACCAACGAGGCCCAGCGCAGACGATT
GCAGGTCACCGGTGAGTTTCTCTTTCTCGTCAACCCAAGGCTATATGGCA
CTCGCCCTCAAGAGTGTCTCCGAAAACTCACTGCGAGGATGCTATCGCGG
TGTATCCAGAGTTGTCGCTGTAGTCAGGCTTCAGGTCGGAGAGAAATTCA
AATATTTACGCCTTGTATCTGCCTTCTTGCAGTGTATGAAACGATAGTCT
ACAAAAACGGCCAAGATCGCAAGAACGCGTTCTTTCCAGTTCCCGACGTC
GATGTGGTGTGCCGAAGAGTAATAGTTCTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCCCCTACGCTAATCGTG
CCGGCCGATATGTTGCATGACGTTGAATACCCCCGTGCAGATTCCTGTGA
ACTTTGGGAGTGCGGTGCGGGGTACGCCGACATCGCGGGGCAATGCCTCA
ATATATCTGGACGTAAATTGTTTTCAGATGACAGAACCGATGACGACTTT
CTGACCGACGATGAGTACACCGTGGACGACGATGACTACACATCCGAAAT
CCCTTCCTGCAGTCAGGCGGTTTGCTGTGAACGTGGTGAGCGCCCTTCCA
ATCATTTCTTCGGGACGTCGTGCGTTGCGGCCGCTGAAATACTTTCGGAA
ATGAGAGAAGTTAAACTCAGACGTATGTCATGAGTACACCGAATCGTGTG
CTTGTGAAGTACAGTCGGTTTACATTAACCAAATTTTGAACCACATGCAT
GCGAAATATTTCGTTCAGACCCCGGGCAGAGTTATGCCGACGTTCCTACA
TGTAGTGTCCTCTTTGCCCCTGTTCCCCCGTTTCAACAACAGTTTGAGAG
ACTGCAGGAATCTGTACCGTCGGATGGAGTATAAGTGAGTTCACGTCTCG
CCGGAATGGTCTAGGAAGGGAAACCAACGGATGCAACGAAGTATGGCCGG
GACCACAGTCCGGCGCTGGAGGCCTAATAACCCAATGAATCAATATTGTC
CTCGGTTCGGAGTCAGAATACAACAGGAAACGCTGCATCAGCAACCCTAC
CTAACATGTATACCTTTCGATATTGGTCATTGATGAGATAGGTTGATGAG
ATGGCAATGGCGTAACCTTTTGCACAGTCTTCACGACGTACGTACATGTT
GTATATCTCTGCGGCGGGGCGACAAACGTTGCCCCAAATTTACTCTTCAA
CGGCTGCAAGACAATCCCTCCAACGTTTGAGTATTCCCTATGCATACGAA
TAACAAGTCATTTATGTTTCTTGAGACTTGTGGGCACAATCAACAAGAAT
ACAGCCTTGGTTGATCGCCAACCACATCCAGTCCGAAGCAGCCGAAGCCG
CAAAAGAGAATCGCAGAACTATCGGCTCTTGTGTCTTACCGTCCGATGGA
TGGATTCGTTCGTCAAAGGACAAGCAACACATTTGTTAGTGTTTTCCCAC
TTGTTTCACCCAGCGCCTAGCAAAAAAACGTGGCGGCGAATGAATGGTGT
TCCACCGCGGGCAACGGGAGGGAGGGGAGGAAGACAATGTGGCGTGGTGA
GGGGCTACCGCCATCGTAGTAACGGAACAATGAAACAAATAGCGGGAAAC
GTCGGGGAGATGTCACGAGGCCCGGGAGGGCAACAAGAACGCCTTCGAAA
CCAAGCCCTTTTCGTTCACCTCTTAAGTCTGTGTCTGTTTCTCTCATCAA
CCGAAGAATGTGCAAGCCTGTGCCCGAACTGCCGCAGCCAACACACTCGC
TTTCGTATTGACGCGCTCAAACGAAATCTGCGTTCCTCCTTTCTCTCCCT
TCCCCGTGCCGCACGCGTGCTCCGTCTCTACGGCACTGCCCTAACCCACA
CTCGCTTTCTCCCGCTGTCCAACCCCATGCATCGCCAGTGAACACTCCAG
GGCCAATCCCTGAACCAAATGCTCCAACTCCATCGCCAACTCCAACTGCC
ACGACTCCACCAACTCCAACGCCAAGCCCAACGCTACCCCAAGCGCCAAC
TCCTGCTCTAACTCCTGTGCCGACTCCTGCGCCAACTCCTTCATCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15802:171..2716-

>mRNA_Ecto-sp13_S_contig15802.4277.1 ID=mRNA_Ecto-sp13_S_contig15802.4277.1|Name=mRNA_Ecto-sp13_S_contig15802.4277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15802:171..2716- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAGGCTTTCTTCTTGGACAAGCCATCACTCTACTCCATGTCTCGGG
GGTAAGTGCTGCTTTAGCCTCCGGAGAAGAGCACGGCAATAATGAAACGG
GGTTCGGCGCCGTGCGTCCGCGCTGCAATTCTCTCCGTAGCGGATGCGTA
CAAAACAGCGAGCAGCCGGATCAGACCAACGAGGCCCAGCGCAGACGATT
GCAGGTCACCGATTCCTGTGAACTTTGGGAGTGCGGTGCGGGGTACGCCG
ACATCGCGGGGCAATGCCTCAATATATCTGGACGTAAATTGTTTTCAGAT
GACAGAACCGATGACGACTTTCTGACCGACGATGAGTACACCGTGGACGA
CGATGACTACACATCCGAAATCCCTTCCTGCAGTCAGGCGGTTTGCTGTG
AACGTGTGAACACTCCAGGGCCAATCCCTGAACCAAATGCTCCAACTCCA
TCGCCAACTCCAACTGCCACGACTCCACCAACTCCAACGCCAAGCCCAAC
GCTACCCCAAGCGCCAACTCCTGCTCTAACTCCTGTGCCGACTCCTGCGC
CAACTCCTTCATCT
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