mRNA_Ecto-sp13_S_contig15801.4276.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15801.4276.1
Unique NamemRNA_Ecto-sp13_S_contig15801.4276.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15801.4276.1 vs. uniprot
Match: Q8QNC5_ESV1K (EsV-1-157 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC5_ESV1K)

HSP 1 Score: 409 bits (1052), Expect = 4.480e-141
Identity = 247/314 (78.66%), Postives = 261/314 (83.12%), Query Frame = 1 
Query:    7 LDMVVGAS----APLASSFWDDCTETTMCRVVDMLVGVEGAEAAEAGAKGSGADDRAALAVLSVKVDLCRALLSHCGDSRTNNIGLADVLDVLAAAFADVNAKNLSEETVLMYSAGCPDAVRALVRLGADATPSDCCGYTALFFAKDREVVDILLAAGADVDARAEDGITPLMHACCHADIEXXXXXXXXXXXXXXXXXXXXTVLSVICSECCDFVFAALDLXXXXXXXXXXXXXXXXLPVDLLSERIYAKEVVGQARHLLLSAPRDRAWRRRGFVLMCISRSAGADSGGGLAQWLVHARAGQAGVFRSVVRYL 936
            +DM+VGA     APL SSFWD C E T+ RVVDML+      AAEAGAK SG DDRAALAVL+VKVDLCRALLSHC D+  +NI LADVLDVLAAAFADVNAKN S+ETVLMY+AGCPDAVRALVRLGADA  SDCCGYTALFFAKDREVVD+LL AGADVDARAEDGITPLMHAC H DI XXXXXXXXXXXXXXXXXXXX VL VICSE CDFV A LDL                LPVD LSERIYAKEVVGQARHLLLSAP+DRAWRRRGFVLMC+SR+AGADS GGLAQWL+ ARAGQAGVFRSVVRYL
Sbjct:    7 VDMLVGAGDDGRAPLTSSFWDHCAEATVHRVVDMLL------AAEAGAKDSGPDDRAALAVLNVKVDLCRALLSHCADA--SNICLADVLDVLAAAFADVNAKNYSDETVLMYAAGCPDAVRALVRLGADANRSDCCGYTALFFAKDREVVDMLLKAGADVDARAEDGITPLMHACFHTDIXXXXXXXXXXXXXXXXXXXXXXVLYVICSEFCDFVVAMLDLLLRSGADERIADSRGRLPVDCLSERIYAKEVVGQARHLLLSAPQDRAWRRRGFVLMCVSRNAGADSRGGLAQWLMRARAGQAGVFRSVVRYL 312
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15801.4276.1 vs. uniprot
Match: D8LPH8_ECTSI (EsV-1-157 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPH8_ECTSI)

HSP 1 Score: 409 bits (1050), Expect = 7.310e-141
Identity = 249/314 (79.30%), Postives = 261/314 (83.12%), Query Frame = 1 
Query:    1 MTLDMVVGASAPLASSFWDDCTETTMCRVVDMLVGVEGAEAAEAGAKGSGADDRAALAVLSVKVDLCRALLSHCGDSRTNNIGLADVLDVLAAAFADVNAKNLSEETVLMYSAGCPDAVRALVRLGADATPSDCCGYTALFFAKDREVVDILLAAGADVDARAEDGITPLMHACCHADIEXXXXXXXXXXXXXXXXXXXXTVLSVICSECCDFVFAALDLXXXXXXXXXXXXXXXX-LPVDLLSERIYAKEVVGQARHLLLSAPRDRAWRRRGFVLMCISRSAGADSGGG-LAQWLVHARAGQAGVFRSVVRYL 936
            MTLDMVVGASAPLA SFW+DCTE TM RVVDML+      AAEAGAK SG DDRAALAVL+VK DLCRALLSHC D+  +NI LADVLDVL AAFADVNAKN+S ETVLMYSAGCPDAVRALVRLGADAT SDCCGYTALFFAKDREVVD+L+ AGADVDARAEDGITPLMHAC H D  XXXXXXXXXXXXXXXXXXXX VLSVICSE CDFV A LDL                 LPVD LSER+Y KEVVGQARHLLLSAPRDRAWRRRGFVLMC+SRSAGA+S G  LA+WLV ARAGQ GVFR VVRYL
Sbjct:    1 MTLDMVVGASAPLAGSFWNDCTEATMHRVVDMLL------AAEAGAKDSGPDDRAALAVLNVKADLCRALLSHCADA--SNICLADVLDVLVAAFADVNAKNVSGETVLMYSAGCPDAVRALVRLGADATRSDCCGYTALFFAKDREVVDMLVDAGADVDARAEDGITPLMHACFHTDXXXXXXXXXXXXXXXXXXXXXXXVLSVICSELCDFVVAMLDLLLRSGADERIADSDHGRLPVDCLSERVYPKEVVGQARHLLLSAPRDRAWRRRGFVLMCMSRSAGAESSGSDLARWLVSARAGQEGVFREVVRYL 306
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15801.4276.1 vs. uniprot
Match: I4C6A3_DESTA (Ankyrin repeat-containing protein n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) TaxID=706587 RepID=I4C6A3_DESTA)

HSP 1 Score: 61.2 bits (147), Expect = 8.120e-7
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:  319 TVLMYSA--GCPDAVRALVRLGADATPSDCCGYTALFFAKDREVVDILLAAGADVDARAEDGITPLMHACC 525
            +VL+ +A   CPDAVR  ++ G DA  +D  GYTAL F    E+   LL  GADV+A+A +G+TPLM A C
Sbjct:  383 SVLIQAAQRNCPDAVRFYLQSGFDANATDKDGYTALHFCHKPEMAKPLLDHGADVNAQATNGVTPLMKASC 453
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15801.4276.1 vs. uniprot
Match: A0A067MYR6_9AGAM (Uncharacterized protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MYR6_9AGAM)

HSP 1 Score: 59.3 bits (142), Expect = 4.170e-6
Identity = 42/103 (40.78%), Postives = 55/103 (53.40%), Query Frame = 1 
Query:  238 NNIGLADVLDVLAAAFADVNAKNLSEETVLMYSA--GCPDAVRALVRLGADATPSDCCGYTALFFAKD-------REVVDILLAAGADVDARAEDGITPLMHA 519
            N  G AD +  L  A  DVN ++ ++   L  +A  G P AV+AL+  GAD      CG  AL FA +        E V  LL AGA+VDAR  D +TPL++A
Sbjct:  193 NCAGEADAVATLLTASEDVNDRDENDSRPLERAAWLGSPAAVKALLHAGADPNLPGRCGVRALHFAAELMCHPDGEETVAALLQAGAEVDARDGDEVTPLIYA 295
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15801.4276.1 vs. uniprot
Match: UPI0009B9FCEE (ankyrin repeat domain-containing protein n=1 Tax=Corynebacterium pacaense TaxID=1816684 RepID=UPI0009B9FCEE)

HSP 1 Score: 53.5 bits (127), Expect = 4.000e-5
Identity = 40/116 (34.48%), Postives = 65/116 (56.03%), Query Frame = 1 
Query:  202 RALLSHCGDSRTNNIGLADVLDVLAA--AFADVNAKNLSEETVLMYSAGCPDA--VRALVRLGADATPSDCCGYTALFFAK---DREVVDILLAAGADVDARAEDGITPLMHACCH 528
            R L+++    R  ++ L   L  L +  AFA  +A++  + TVLM +A   +   V  L+ +GAD+  +D  G TAL +A    D  +++IL+ AGA++DA  +   TPL +AC H
Sbjct:   11 RNLINYIDGGRYRDLLLTGDLAQLDSLLAFAGPDARDEEDRTVLMRAAEAGNLLFVARLLDMGADSAITDPTGLTALHYAAIEGDDGIIEILIDAGANLDAPDDRDRTPLWYACAH 126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15801.4276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Q8QNC5_ESV1K4.480e-14178.66EsV-1-157 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPH8_ECTSI7.310e-14179.30EsV-1-157 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
I4C6A3_DESTA8.120e-749.30Ankyrin repeat-containing protein n=1 Tax=Desulfom... [more]
A0A067MYR6_9AGAM4.170e-640.78Uncharacterized protein n=1 Tax=Botryobasidium bot... [more]
UPI0009B9FCEE4.000e-534.48ankyrin repeat domain-containing protein n=1 Tax=C... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15801contigEcto-sp13_S_contig15801:2762..3700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViruses
Stop1
Start1
Seed ortholog score412.9
Seed ortholog evalue1.3e-112
Seed eggNOG ortholog654926.Q8QNC5_ESV1K
Model size939
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGs4QB1T@10239,4QUVA@35237
Ec32 ortholog descriptionEsV-1-157 ankyrin-repeat protein
Ec32 orthologEc-06_005330.1
Cds size939
COG Functional cat.S
Best tax leveldsDNA viruses, no RNA stage
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462835.8480275-CDS-Ecto-sp13_S_contig15801:2761..37001681462835.8480275-CDS-Ecto-sp13_S_contig15801:2761..3700Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15801 2762..3700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15801.4276.1prot_Ecto-sp13_S_contig15801.4276.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15801 2762..3700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15801.4276.1

>prot_Ecto-sp13_S_contig15801.4276.1 ID=prot_Ecto-sp13_S_contig15801.4276.1|Name=mRNA_Ecto-sp13_S_contig15801.4276.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=313bp
MTLDMVVGASAPLASSFWDDCTETTMCRVVDMLVGVEGAEAAEAGAKGSG
ADDRAALAVLSVKVDLCRALLSHCGDSRTNNIGLADVLDVLAAAFADVNA
KNLSEETVLMYSAGCPDAVRALVRLGADATPSDCCGYTALFFAKDREVVD
ILLAAGADVDARAEDGITPLMHACCHADIEVARALLENGADVNLRDDEGR
TVLSVICSECCDFVFAALDLLLRSGADERIADNHGRLPVDLLSERIYAKE
VVGQARHLLLSAPRDRAWRRRGFVLMCISRSAGADSGGGLAQWLVHARAG
QAGVFRSVVRYL*
back to top

mRNA from alignment at Ecto-sp13_S_contig15801:2762..3700+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15801.4276.1 ID=mRNA_Ecto-sp13_S_contig15801.4276.1|Name=mRNA_Ecto-sp13_S_contig15801.4276.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=939bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15801:2762..3700+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTCTCGACATGGTCGTTGGTGCGAGCGCGCCGTTGGCGAGCTCATT
TTGGGATGATTGTACGGAGACGACCATGTGCCGCGTTGTCGACATGCTCG
TGGGGGTGGAGGGGGCGGAGGCGGCGGAGGCCGGTGCCAAAGGTTCCGGC
GCGGACGACCGCGCGGCTCTTGCGGTGCTCAGCGTAAAGGTGGACTTGTG
TCGCGCCCTGTTGAGCCACTGTGGTGATTCTCGCACTAACAACATAGGTT
TGGCGGACGTGCTCGACGTGCTCGCGGCAGCCTTCGCAGACGTGAACGCC
AAGAATCTTTCGGAGGAAACGGTTCTTATGTACTCCGCCGGGTGTCCCGA
TGCTGTGCGCGCCCTCGTGCGCCTGGGTGCAGACGCAACCCCCTCTGATT
GCTGCGGATACACCGCCCTCTTTTTCGCGAAAGACAGGGAAGTGGTCGAC
ATTCTTCTGGCGGCCGGAGCCGACGTCGACGCTCGGGCCGAAGACGGCAT
CACGCCTTTGATGCACGCGTGTTGTCATGCAGACATCGAAGTAGCTCGCG
CCCTCTTGGAAAATGGCGCAGACGTCAACCTCCGGGACGACGAAGGGCGG
ACTGTTCTCAGCGTGATCTGCTCCGAATGCTGCGACTTTGTCTTTGCGGC
GCTGGACTTGTTGCTGAGGTCGGGTGCGGACGAGAGAATCGCCGACAATC
ACGGCCGTCTCCCCGTCGATTTATTGTCGGAACGTATTTACGCCAAGGAG
GTGGTCGGCCAGGCTCGGCATCTGTTGCTGTCTGCCCCGCGGGATAGAGC
GTGGCGCCGCCGGGGATTTGTCTTGATGTGCATATCTCGCAGTGCGGGCG
CGGACTCCGGCGGCGGCTTGGCGCAGTGGCTCGTGCACGCTCGGGCGGGG
CAGGCGGGCGTGTTTAGGTCGGTCGTGAGGTATCTCTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15801:2762..3700+

>mRNA_Ecto-sp13_S_contig15801.4276.1 ID=mRNA_Ecto-sp13_S_contig15801.4276.1|Name=mRNA_Ecto-sp13_S_contig15801.4276.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=939bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15801:2762..3700+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTCTCGACATGGTCGTTGGTGCGAGCGCGCCGTTGGCGAGCTCATT
TTGGGATGATTGTACGGAGACGACCATGTGCCGCGTTGTCGACATGCTCG
TGGGGGTGGAGGGGGCGGAGGCGGCGGAGGCCGGTGCCAAAGGTTCCGGC
GCGGACGACCGCGCGGCTCTTGCGGTGCTCAGCGTAAAGGTGGACTTGTG
TCGCGCCCTGTTGAGCCACTGTGGTGATTCTCGCACTAACAACATAGGTT
TGGCGGACGTGCTCGACGTGCTCGCGGCAGCCTTCGCAGACGTGAACGCC
AAGAATCTTTCGGAGGAAACGGTTCTTATGTACTCCGCCGGGTGTCCCGA
TGCTGTGCGCGCCCTCGTGCGCCTGGGTGCAGACGCAACCCCCTCTGATT
GCTGCGGATACACCGCCCTCTTTTTCGCGAAAGACAGGGAAGTGGTCGAC
ATTCTTCTGGCGGCCGGAGCCGACGTCGACGCTCGGGCCGAAGACGGCAT
CACGCCTTTGATGCACGCGTGTTGTCATGCAGACATCGAAGTAGCTCGCG
CCCTCTTGGAAAATGGCGCAGACGTCAACCTCCGGGACGACGAAGGGCGG
ACTGTTCTCAGCGTGATCTGCTCCGAATGCTGCGACTTTGTCTTTGCGGC
GCTGGACTTGTTGCTGAGGTCGGGTGCGGACGAGAGAATCGCCGACAATC
ACGGCCGTCTCCCCGTCGATTTATTGTCGGAACGTATTTACGCCAAGGAG
GTGGTCGGCCAGGCTCGGCATCTGTTGCTGTCTGCCCCGCGGGATAGAGC
GTGGCGCCGCCGGGGATTTGTCTTGATGTGCATATCTCGCAGTGCGGGCG
CGGACTCCGGCGGCGGCTTGGCGCAGTGGCTCGTGCACGCTCGGGCGGGG
CAGGCGGGCGTGTTTAGGTCGGTCGTGAGGTATCTCTGA
back to top