mRNA_Ecto-sp13_S_contig15797.4269.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15797.4269.1
Unique NamemRNA_Ecto-sp13_S_contig15797.4269.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: D7FR23_ECTSI (KRR-R motif-containing protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR23_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.250e-26
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 CTAVQIGGMVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ 168
            C  ++IGGMVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ
Sbjct:  120 CDIIKIGGMVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ 175
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BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: A0A2D4C0W2_PYTIN (KRR1 small subunit processome component n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0W2_PYTIN)

HSP 1 Score: 102 bits (255), Expect = 1.700e-24
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 CTAVQIGGMVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ 168
            C  ++IGG+VRNKERFVKRR RLVGPDG+TLKA+ELLTGCYVLVQGNTVSAMGSYQ
Sbjct:  149 CDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTGCYVLVQGNTVSAMGSYQ 204
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BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: M4BMI4_HYAAE (KRR1 small subunit processome component n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BMI4_HYAAE)

HSP 1 Score: 100 bits (248), Expect = 4.310e-24
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 CTAVQIGGMVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ 168
            C  ++IGG+VRNKERFVKRR RLVGPDG+TLKA+ELLT CYVLVQGNTVSAMGSYQ
Sbjct:  151 CDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTDCYVLVQGNTVSAMGSYQ 206
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BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: A0A0B7G3P4_THACB (KRR1 small subunit processome component n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0B7G3P4_THACB)

HSP 1 Score: 100 bits (249), Expect = 7.050e-24
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 CTAVQIGGMVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQA 171
            C  ++IGGMVRNKERFVKRR R++GPDGSTLKA+ELLTGCYVLVQGNTVS MG Y+A
Sbjct:   44 CDIIKIGGMVRNKERFVKRRQRIIGPDGSTLKAIELLTGCYVLVQGNTVSVMGPYKA 100
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BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: K3WI00_GLOUD (KRR1 small subunit processome component n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WI00_GLOUD)

HSP 1 Score: 100 bits (249), Expect = 1.170e-23
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 CTAVQIGGMVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ 168
            C  ++IGG+VRNKERFVKRR RLVGPDG+TLKA+ELLT CYVLVQGNTVSAMGSYQ
Sbjct:  148 CDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGSYQ 203
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BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: A0A8K1C3X6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3X6_PYTOL)

HSP 1 Score: 100 bits (248), Expect = 1.670e-23
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 CTAVQIGGMVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ 168
            C  ++IGG+VRNKERFVKRR RLVGPDG+TLKA+ELLT CYVLVQGNTVSAMGSYQ
Sbjct:  151 CDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAVELLTNCYVLVQGNTVSAMGSYQ 206
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BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: A0A8H8IL03_9AGAM (KRR1 small subunit processome component n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8IL03_9AGAM)

HSP 1 Score: 99.4 bits (246), Expect = 2.320e-23
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 CTAVQIGGMVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQA 171
            C  ++IGG+VRNKERFVKRR R++GPDGSTLKA+ELLTGCYVLVQGNTVS MG Y+A
Sbjct:   99 CDIIKIGGLVRNKERFVKRRQRIIGPDGSTLKAIELLTGCYVLVQGNTVSVMGPYKA 155
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BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: A0A8H3HG12_9AGAM (KRR1 small subunit processome component n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3HG12_9AGAM)

HSP 1 Score: 99.4 bits (246), Expect = 2.810e-23
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 CTAVQIGGMVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQA 171
            C  ++IGG+VRNKERFVKRR R++GPDGSTLKA+ELLTGCYVLVQGNTVS MG Y+A
Sbjct:  131 CDIIKIGGLVRNKERFVKRRQRIIGPDGSTLKAIELLTGCYVLVQGNTVSVMGPYKA 187
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BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: H3GMC4_PHYRM (KRR1 small subunit processome component n=8 Tax=Phytophthora TaxID=4783 RepID=H3GMC4_PHYRM)

HSP 1 Score: 99.4 bits (246), Expect = 3.220e-23
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 CTAVQIGGMVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQ 168
            C  ++IGG+VRNKERFVKRR RLVGPDG+TLKA+ELLT CYVLVQGNTVSAMG+YQ
Sbjct:  150 CDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGTYQ 205
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BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Match: A0A5D6Y888_9STRA (KRR1 small subunit processome component n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y888_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.370e-23
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 CTAVQIGGMVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQARLRS 183
            C  ++IGG+VRNKERFVKRR RLVGPDG+TLKA+ELLT CYVLVQGNTVSAMGS+Q  LRS
Sbjct:  155 CDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGSFQG-LRS 214
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15797.4269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR23_ECTSI2.250e-2692.86KRR-R motif-containing protein 1 n=1 Tax=Ectocarpu... [more]
A0A2D4C0W2_PYTIN1.700e-2485.71KRR1 small subunit processome component n=1 Tax=Py... [more]
M4BMI4_HYAAE4.310e-2483.93KRR1 small subunit processome component n=2 Tax=Hy... [more]
A0A0B7G3P4_THACB7.050e-2480.70KRR1 small subunit processome component n=2 Tax=Rh... [more]
K3WI00_GLOUD1.170e-2383.93KRR1 small subunit processome component n=1 Tax=Gl... [more]
A0A8K1C3X6_PYTOL1.670e-2383.93Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8H8IL03_9AGAM2.320e-2378.95KRR1 small subunit processome component n=2 Tax=Ce... [more]
A0A8H3HG12_9AGAM2.810e-2378.95KRR1 small subunit processome component n=1 Tax=Rh... [more]
H3GMC4_PHYRM3.220e-2382.14KRR1 small subunit processome component n=8 Tax=Ph... [more]
A0A5D6Y888_9STRA3.370e-2380.33KRR1 small subunit processome component n=1 Tax=Py... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15797contigEcto-sp13_S_contig15797:2435..2620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score97.4
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog2880.D7FR23
Preferred nameKRR1
Model size186
KEGG koko:K06961
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045171,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons1
EggNOG free text desc.rRNA processing
EggNOG OGsCOG1094@1,KOG2874@2759
Cds size162
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462835.1000469-CDS-Ecto-sp13_S_contig15797:2434..25961681462835.1000469-CDS-Ecto-sp13_S_contig15797:2434..2596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15797 2435..2596 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462835.1119025-UTR-Ecto-sp13_S_contig15797:2596..26201681462835.1119025-UTR-Ecto-sp13_S_contig15797:2596..2620Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15797 2597..2620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15797.4269.1prot_Ecto-sp13_S_contig15797.4269.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15797 2435..2596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15797.4269.1

>prot_Ecto-sp13_S_contig15797.4269.1 ID=prot_Ecto-sp13_S_contig15797.4269.1|Name=mRNA_Ecto-sp13_S_contig15797.4269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
MVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQAR
LRS*
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mRNA from alignment at Ecto-sp13_S_contig15797:2435..2620-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15797.4269.1 ID=mRNA_Ecto-sp13_S_contig15797.4269.1|Name=mRNA_Ecto-sp13_S_contig15797.4269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15797:2435..2620- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTACTGCTGTACAGATCGGAGGCATGGTGCGCAACAAGGAGCGGTTCGT
GAAACGGCGGGCGAGGTTGGTCGGGCCTGACGGATCTACCCTCAAGGCGC
TGGAGCTGCTGACCGGGTGCTACGTTCTCGTGCAGGGAAACACGGTGTCT
GCCATGGGGTCGTACCAGGCGAGACTGCGTAGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15797:2435..2620-

>mRNA_Ecto-sp13_S_contig15797.4269.1 ID=mRNA_Ecto-sp13_S_contig15797.4269.1|Name=mRNA_Ecto-sp13_S_contig15797.4269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15797:2435..2620- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCGCAACAAGGAGCGGTTCGTGAAACGGCGGGCGAGGTTGGTCGG
GCCTGACGGATCTACCCTCAAGGCGCTGGAGCTGCTGACCGGGTGCTACG
TTCTCGTGCAGGGAAACACGGTGTCTGCCATGGGGTCGTACCAGGCGAGA
CTGCGTAGTTGA
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