mRNA_Ecto-sp13_S_contig15797.4268.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15797.4268.1
Unique NamemRNA_Ecto-sp13_S_contig15797.4268.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15797.4268.1 vs. uniprot
Match: D7FR23_ECTSI (KRR-R motif-containing protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR23_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 2.010e-63
Identity = 104/108 (96.30%), Postives = 106/108 (98.15%), Query Frame = 1 
Query:    1 GLKQVRKVVTDCMNNVHPVYNIKTLMIRRELAKDPNLKGENWERFLPQFHKKNVKRKKPAVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKKRAEKKVRN 324
            GLKQVRKVVTDCMNNVHPVYNIKTLMIRRELAKDPNLK ENWERFLPQFHKKNVKRKKPAVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKKRAEKK ++
Sbjct:  176 GLKQVRKVVTDCMNNVHPVYNIKTLMIRRELAKDPNLKDENWERFLPQFHKKNVKRKKPAVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKKRAEKKAKS 283
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BLAST of mRNA_Ecto-sp13_S_contig15797.4268.1 vs. uniprot
Match: A0A836CN64_9STRA (KRR1 small subunit processome component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN64_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.800e-46
Identity = 79/104 (75.96%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 GLKQVRKVVTDCMNNVHPVYNIKTLMIRRELAKDPNLKGENWERFLPQFHKKNVKRKKPAVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKKRAEK 312
            GLKQ RKV+ DCMNN+HPVYNIKTLMIRRELAKDP L GE+W RFLP F+K+NV RKKP  +REK+ YTPFPPAQ P KVD QLESGE+FLNE QRK + RAEK
Sbjct:  194 GLKQARKVIVDCMNNIHPVYNIKTLMIRRELAKDPALAGEDWSRFLPSFNKRNVPRKKPRSVREKRAYTPFPPAQLPSKVDLQLESGEYFLNEAQRKGRARAEK 297
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BLAST of mRNA_Ecto-sp13_S_contig15797.4268.1 vs. uniprot
Match: A0A7S2DCQ6_9STRA (KRR-R motif-containing protein 1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCQ6_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.100e-43
Identity = 78/106 (73.58%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 GLKQVRKVVTDCMNNVHPVYNIKTLMIRRELAKDPNLKGENWERFLPQFHKKNVKRKKPAVIRE--KKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKKRAEK 312
            G+KQVRKVV DCMNN+HPVYNIK LMI+RELAKDP L GENW+RFLP+F KK V RKKP  +R+  K+ YTPFPPAQTP KVD QLESGE+FL+E QRKA++R+EK
Sbjct:  181 GIKQVRKVVEDCMNNIHPVYNIKILMIKRELAKDPALAGENWDRFLPKFAKKTVDRKKPFKVRDTAKRTYTPFPPAQTPSKVDLQLESGEYFLSETQRKARRRSEK 286
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BLAST of mRNA_Ecto-sp13_S_contig15797.4268.1 vs. uniprot
Match: A0A6G0XML2_9STRA (KRR1 small subunit processome component n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XML2_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.500e-43
Identity = 71/104 (68.27%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:    1 GLKQVRKVVTDCMNNVHPVYNIKTLMIRRELAKDPNLKGENWERFLPQFHKKNVKRKKPAVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKKRAEK 312
            GL+ VRK+V DC  NVHP+YNIKTLMI+RELAKDP L GENW+RFLP F KKNV+ KKP V+REKK YTPFPPA TP K+D+++ESGE+F+ E +RK  K+A+K
Sbjct:  185 GLRHVRKIVEDCFQNVHPIYNIKTLMIKRELAKDPKLSGENWDRFLPTFKKKNVQTKKPHVVREKKAYTPFPPAPTPSKIDKEIESGEYFMKEHERKEMKKAKK 288
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BLAST of mRNA_Ecto-sp13_S_contig15797.4268.1 vs. uniprot
Match: A0A1V9ZKL3_9STRA (KRR1 small subunit processome component n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZKL3_9STRA)

HSP 1 Score: 153 bits (387), Expect = 3.120e-43
Identity = 72/104 (69.23%), Postives = 89/104 (85.58%), Query Frame = 1 
Query:    1 GLKQVRKVVTDCMNNVHPVYNIKTLMIRRELAKDPNLKGENWERFLPQFHKKNVKRKKPAVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKKRAEK 312
            GL+ VRK+V DC +NVHP+YNIKTLMI+RELAKDP L+GENWERFLP F KKN++ KKP V+REK+ YTPFPPAQ P KVD+++ESGE+F+ E +RKA K+A K
Sbjct:  181 GLRHVRKIVEDCFHNVHPIYNIKTLMIKRELAKDPALQGENWERFLPVFKKKNIQTKKPHVVREKREYTPFPPAQLPSKVDKEIESGEYFMKEHERKAMKKAAK 284
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BLAST of mRNA_Ecto-sp13_S_contig15797.4268.1 vs. uniprot
Match: A0A024TMB1_9STRA (KRR1 small subunit processome component n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TMB1_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.230e-43
Identity = 71/104 (68.27%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 GLKQVRKVVTDCMNNVHPVYNIKTLMIRRELAKDPNLKGENWERFLPQFHKKNVKRKKPAVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKKRAEK 312
            GL+ VRK+V DC  NVHP+YNIKTLMI+REL+KDP L GENW+RFLP F KKNV+ KKP V+REKK YTPFPPA TP K+D+++ESGE+F+ E +RKA K+A+K
Sbjct:  184 GLRHVRKIVEDCFQNVHPIYNIKTLMIKRELSKDPKLAGENWDRFLPVFKKKNVQTKKPHVVREKKAYTPFPPAPTPSKIDKEIESGEYFMKEHERKAMKQAKK 287
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BLAST of mRNA_Ecto-sp13_S_contig15797.4268.1 vs. uniprot
Match: A0A7S2W9F2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9F2_9STRA)

HSP 1 Score: 145 bits (365), Expect = 4.100e-43
Identity = 70/93 (75.27%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:    1 GLKQVRKVVTDCMNNVHPVYNIKTLMIRRELAKDPNLKGENWERFLPQFHKKNVKRKKPAVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNE 279
            GLKQVRKVV DCM N+HPVYNIK LMI+RELAKDP L  ENWERFLP+F +K V RKKP  +REKK YTPFPP Q P KVD QLESGE+FL+E
Sbjct:    7 GLKQVRKVVEDCMRNIHPVYNIKILMIKRELAKDPELANENWERFLPKFARKTVARKKPVNVREKKSYTPFPPQQQPSKVDLQLESGEYFLDE 99
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BLAST of mRNA_Ecto-sp13_S_contig15797.4268.1 vs. uniprot
Match: A0A1V9ZXJ5_9STRA (KRR1 small subunit processome component n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXJ5_9STRA)

HSP 1 Score: 153 bits (386), Expect = 4.490e-43
Identity = 71/108 (65.74%), Postives = 91/108 (84.26%), Query Frame = 1 
Query:    1 GLKQVRKVVTDCMNNVHPVYNIKTLMIRRELAKDPNLKGENWERFLPQFHKKNVKRKKPAVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKKRAEKKVRN 324
            GL+ +RK+V DC +N+HP+YNIKTLMI+RELAKDP L+GENW+RFLP F KKNV+ KKP V+REKK YTPFPPAQ P K+D+++ESGE+F+   +RKA K+AEK+  N
Sbjct:  187 GLRHIRKIVEDCFHNIHPIYNIKTLMIKRELAKDPALQGENWDRFLPVFKKKNVQTKKPHVVREKKEYTPFPPAQMPSKIDKEIESGEYFMKAHERKAMKKAEKQAIN 294
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BLAST of mRNA_Ecto-sp13_S_contig15797.4268.1 vs. uniprot
Match: B8C0X8_THAPS (KRR1 small subunit processome component n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0X8_THAPS)

HSP 1 Score: 153 bits (387), Expect = 7.540e-43
Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 GLKQVRKVVTDCMNNVHPVYNIKTLMIRRELAKDPNLKGENWERFLPQFHKKNVKRKKPAVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKKRAEKKV 318
            G+KQ R V+ DCMNN+HPVYNIK LMI REL +DP LK E+WERFLP F KKNVKR+KP  +++KK YTPFPPAQ P K+D QLESGE+FL+ER+RKAKK  EKK+
Sbjct:  204 GIKQTRNVILDCMNNIHPVYNIKRLMIMRELERDPKLKEESWERFLPTFKKKNVKRRKPHQLKKKKSYTPFPPAQQPSKIDLQLESGEYFLSERERKAKKLGEKKI 309
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BLAST of mRNA_Ecto-sp13_S_contig15797.4268.1 vs. uniprot
Match: A0A485KS03_9STRA (KRR1 small subunit processome component n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KS03_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.620e-42
Identity = 71/108 (65.74%), Postives = 88/108 (81.48%), Query Frame = 1 
Query:    1 GLKQVRKVVTDCMNNVHPVYNIKTLMIRRELAKDPNLKGENWERFLPQFHKKNVKRKKPAVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKKRAEKKVRN 324
            GL+ VR +V DC  NVHP+YNIKTLMI+REL KDP L+GENW+RFLP F KKNV  KKP V+REK+VYTPFPPA  P K+D+++ESGE+F+ E++RKA K+AEK   N
Sbjct:  192 GLRHVRSIVEDCFKNVHPIYNIKTLMIKRELQKDPKLQGENWDRFLPVFKKKNVATKKPHVVREKRVYTPFPPAPVPSKIDKEIESGEYFMKEQERKAMKKAEKAAAN 299
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15797.4268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR23_ECTSI2.010e-6396.30KRR-R motif-containing protein 1 n=1 Tax=Ectocarpu... [more]
A0A836CN64_9STRA1.800e-4675.96KRR1 small subunit processome component n=1 Tax=Tr... [more]
A0A7S2DCQ6_9STRA1.100e-4373.58KRR-R motif-containing protein 1 n=1 Tax=Dictyocha... [more]
A0A6G0XML2_9STRA2.500e-4368.27KRR1 small subunit processome component n=1 Tax=Ap... [more]
A0A1V9ZKL3_9STRA3.120e-4369.23KRR1 small subunit processome component n=3 Tax=Sa... [more]
A0A024TMB1_9STRA3.230e-4368.27KRR1 small subunit processome component n=2 Tax=Ap... [more]
A0A7S2W9F2_9STRA4.100e-4375.27Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A1V9ZXJ5_9STRA4.490e-4365.74KRR1 small subunit processome component n=1 Tax=Th... [more]
B8C0X8_THAPS7.540e-4369.81KRR1 small subunit processome component n=1 Tax=Th... [more]
A0A485KS03_9STRA1.620e-4265.74KRR1 small subunit processome component n=1 Tax=Ap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15797contigEcto-sp13_S_contig15797:329..1572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score208.0
Seed ortholog evalue2.2e-51
Seed eggNOG ortholog2880.D7FR23
Preferred nameKRR1
Model size324
KEGG koko:K06961
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045171,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons2
EggNOG free text desc.rRNA processing
EggNOG OGsCOG1094@1,KOG2874@2759
Cds size324
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462835.0581014-CDS-Ecto-sp13_S_contig15797:328..4781681462835.0581014-CDS-Ecto-sp13_S_contig15797:328..478Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15797 329..478 -
1681462835.070536-CDS-Ecto-sp13_S_contig15797:1398..15721681462835.070536-CDS-Ecto-sp13_S_contig15797:1398..1572Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15797 1399..1572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15797.4268.1prot_Ecto-sp13_S_contig15797.4268.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15797 329..1572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15797.4268.1

>prot_Ecto-sp13_S_contig15797.4268.1 ID=prot_Ecto-sp13_S_contig15797.4268.1|Name=mRNA_Ecto-sp13_S_contig15797.4268.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
GLKQVRKVVTDCMNNVHPVYNIKTLMIRRELAKDPNLKGENWERFLPQFH
KKNVKRKKPAVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKK
RAEKKVRN
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mRNA from alignment at Ecto-sp13_S_contig15797:329..1572-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15797.4268.1 ID=mRNA_Ecto-sp13_S_contig15797.4268.1|Name=mRNA_Ecto-sp13_S_contig15797.4268.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1244bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15797:329..1572- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCTGAAGCAGGTGCGTAAGGTGGTGACGGACTGCATGAACAACGTGCA
CCCTGTGTACAACATCAAGACCCTCATGATCCGGAGGGAGCTAGCCAAGG
ACCCCAACCTCAAGGGCGAGAACTGGGAACGGTTCTTGCCGCAGTTCCAC
AAGAAGAACGTGAAGCGGAAGAAGGTAGATACGGCAGGCATCGAACGGGG
TGGCGTGTGTGCAGCGGCAGGGTGTAAAATTATTGTCCTTTTTTGTCTCT
CTCCCATCTTTGTTGCAATTTCTCCAATCGGCGTCCTTGTCTACCTTACT
TTCTATCATCGTCGCTGTCTCTGGTCTTTACTTAAATGTATCACATACGC
GCACATGCACTGACGTGTAATGATATGCCAGCCGGTTACGTAGCGCTGTC
GATGCTAATCAACAGTACACACAAGTGCTGCTTTCCGCATCATGTGTACG
ACCACCAGCCTTTTTGATTTACCATTGGCCAACTTTCACGACCACCTTTT
ACCTTATTTCTTTTTGCGTTGGCTCACCCCCCCGGTGTCCTGTGGGGACA
ACGCCCCGTCCCCTCGGGGCCGGTCTAACAACTAAGGCATGCGAAACATG
AGTACGCCCCCCCCCCCCGCGCGCATCACACAAAAAGTCTTGTTAGACCG
CTCGAAGAAGAAGTGGAGGGATCAGGGCTTTCCCTATGGGGAAGCCCACG
GCGACAACGACGGGGAGGGGGGGGCGACAAACCCTCCGTCTGTTTGCGTG
AAACAGTGTGCACAAAGTGTTGAAGGACAATACCATACTGGTGTAGTGGG
ATCACTTGCGCTACTATCCGCTGCTTGTGGAATCAGTGACTCTCTAAACG
CGACCCTAATCCCGACCCTTACCGCTTTCCCGACGTCTCCGTTCAAACGT
CTCAACCATGCCGCCTTTATTGATTACGGCTCTCTGAACGCGACCCCTAC
CCCTACACCTTGCCGCATTCCCAACGCCTCCGTGCATGCTTTTCAATTAC
GCCACCTCTGCAGAAATTGTGACTCTCTCCAACGCGACTCTTAACCCCGA
CTCGATTGCCCCCGCACATTCGTCTTAACTACGCCGCTTTACAGCCCGCC
GTCATCAGGGAGAAGAAAGTGTACACCCCGTTCCCTCCGGCACAAACGCC
GCGCAAGGTGGATGAGCAACTTGAGAGCGGAGAGTTCTTTCTCAACGAGC
GCCAGCGGAAGGCGAAGAAAAGGGCGGAGAAGAAAGTAAGAAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15797:329..1572-

>mRNA_Ecto-sp13_S_contig15797.4268.1 ID=mRNA_Ecto-sp13_S_contig15797.4268.1|Name=mRNA_Ecto-sp13_S_contig15797.4268.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15797:329..1572- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCTGAAGCAGGTGCGTAAGGTGGTGACGGACTGCATGAACAACGTGCA
CCCTGTGTACAACATCAAGACCCTCATGATCCGGAGGGAGCTAGCCAAGG
ACCCCAACCTCAAGGGCGAGAACTGGGAACGGTTCTTGCCGCAGTTCCAC
AAGAAGAACGTGAAGCGGAAGAAGCCCGCCGTCATCAGGGAGAAGAAAGT
GTACACCCCGTTCCCTCCGGCACAAACGCCGCGCAAGGTGGATGAGCAAC
TTGAGAGCGGAGAGTTCTTTCTCAACGAGCGCCAGCGGAAGGCGAAGAAA
AGGGCGGAGAAGAAAGTAAGAAAC
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