mRNA_Ecto-sp13_S_contig15796.4267.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15796.4267.1
Unique NamemRNA_Ecto-sp13_S_contig15796.4267.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15796.4267.1 vs. uniprot
Match: D7FNL4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL4_ECTSI)

HSP 1 Score: 664 bits (1713), Expect = 2.620e-233
Identity = 333/342 (97.37%), Postives = 335/342 (97.95%), Query Frame = 1
Query:    1 RVRPATNFAFGVIRSDELHLTPVHATMQMRPCFQHIDEAKAQEIEMDLDDPDNGGTKEAEKPQQVSFKKKESERATAARKSSYAYKKSIEDAEPWVALEVHGQNDDRSLDEFSRMFVDDDASANLGTTTKEFPPCERYLEGLDYMEEYDENGESFSAGGRGRRSLVDSIDLVTAGTGTYSPVNLPAAPVHQLGGDAKVVGYLKLAHLVPFSMLLDVTNMSPDAVLQALSAEGRQKGLLMRGNWAALPADVWPRGPPHAADCLSVAQCLLHRYGAVSRPDLQRRFPELEPATLKELLSRIAELDTVDRRWVPKVKDGLTFGMEHPEIVELEEERWTLHESILK 1026
            RVRPATNFAFGVIRSDELHLTP+HATMQMRPCFQHIDEAKAQEIEMDLDDPDNGGTKEAEKPQQVSFKKKESERATAARKSSYAYKKSIEDAEPWVALEVHGQNDDRSLDEFSRMFVDDDASAN GTTTKEFPPCERYL+GLDYMEEYDENGESFSAGGRGR SL DSIDLVTAGTGTYSPVNLPAAP HQLGGDAKVVGYLKLAHLVPFSMLLDVTNMSPDAVLQALS EGRQKGLLMRGNWAALPADVWPRGPPHAADCLSVAQCLLHRYGAVSRPDLQRRFPELEP TLKELL RIAELDTVDRRWVPKVKDGLTFGMEHPEIVELEEERWTLHESILK
Sbjct:  142 RVRPATNFAFGVIRSDELHLTPIHATMQMRPCFQHIDEAKAQEIEMDLDDPDNGGTKEAEKPQQVSFKKKESERATAARKSSYAYKKSIEDAEPWVALEVHGQNDDRSLDEFSRMFVDDDASANRGTTTKEFPPCERYLQGLDYMEEYDENGESFSAGGRGR-SLADSIDLVTAGTGTYSPVNLPAAPAHQLGGDAKVVGYLKLAHLVPFSMLLDVTNMSPDAVLQALSVEGRQKGLLMRGNWAALPADVWPRGPPHAADCLSVAQCLLHRYGAVSRPDLQRRFPELEPVTLKELLLRIAELDTVDRRWVPKVKDGLTFGMEHPEIVELEEERWTLHESILK 482          
BLAST of mRNA_Ecto-sp13_S_contig15796.4267.1 vs. uniprot
Match: A0A836CI66_9STRA (Sin-like protein conserved region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI66_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.070e-35
Identity = 122/366 (33.33%), Postives = 167/366 (45.63%), Query Frame = 1
Query:    4 VRPATNFAFGVIRSDELHLTPVHATMQMRPCFQHIDEAKAQEIEMDLDDPDNGGTKEAEKP-----QQVSFKKKESERATAARKSSYAYKKSIEDAEPWVALEVHGQNDDRSLDEFSRMFVDDDASANLGTTTKEFPPCERYLEGLDYMEEYDENGESFSAGGRGRRSLVDSIDLVTA----------------GTG-TYSPVNLPAAPVHQLG---GDAKVVGYLKLAHLVPFSMLLDVTNMSPDAVLQALSAEGRQKGLLMRGNWA--------ALPADVWPRGPPHAADCLSVAQCLLHRYGAVSRPDLQRRFPELEPATLKELLSRIAELDTVDRRWVPKVKDGLTFGMEHPEIVELEEERW 1002
            V  ATN+A GV+R +ELHLTP+   +QMRP F+H+D      I+  +++PD+     AEKP     +QV FK+KE+ERAT AR+ SYAYK+  EDAE WV L VH      + DEF  MF  D A           P    YL  LD++      G   +A   G       +DL  A                GTG +Y   +    PV QL    G   +  Y++ A ++   ML +V  ++ DA   A++ E     + +RG W         A  A                A  LLH +G VSR  LQRRF  +  ATLK +L  +A LD   + W  KV+D     +  P +    +  W
Sbjct:   92 VPAATNYAIGVVRDNELHLTPLSGILQMRPAFRHVD------IQAAIEEPDDDDRAAAEKPVAGEPRQVMFKRKETERATQARQRSYAYKRDREDAERWVDLAVHDAASAHARDEFENMFCGDRARPICF-----LPGPAAYLRRLDHLHP----GADAAALPAGTGDSAAPLDLAAADGXXXXXXXXXXXXGGGTGASYGVGHAAPLPVDQLSALKGVGALRAYVRAAVVITHDMLKEVAEVASDA---AVARELSGFAVPVRGAWVLRSERLLPATAAGXXXXXXXXXXRARDAALALLHAHGGVSRAALQRRFEIVPGATLKTVLEGVAALDRGLQCWELKVEDTFDLALALPGVAAAADAEW 439          
BLAST of mRNA_Ecto-sp13_S_contig15796.4267.1 vs. uniprot
Match: A0A067C288_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067C288_SAPPC)

HSP 1 Score: 96.3 bits (238), Expect = 9.280e-19
Identity = 66/175 (37.71%), Postives = 94/175 (53.71%), Query Frame = 1
Query:    4 VRPATNFAFGVIRSDELHLTPVHATMQMRPCFQHIDEAKAQEIEMDLDDPDNGGTKEAE---KPQQVSFKKKESERATAARKSSYAYKKSIEDAEPWVALEVHGQNDDRSLDEFSRMFVDDDASANLGTTTKEFPPCERYLEGLDYMEEYDENGESFSAGGRGRRSLV-DSIDLV 516
            V P +N+A GV R  +LHLTPV   MQ+RP  QH+DE+  +  + D+ D +     EA    K  QV FKK++SERA AA +SSYAYK+ +  +E W+ L V  +++D+  DEF ++F + +A      T         YL  L Y      NG+       G  SL  D +D+V
Sbjct:   84 VTPVSNYAAGVFRKGQLHLTPVSTIMQLRPSLQHLDESDDEASDDDMADVETDKKAEATPDVKEVQVQFKKRQSERALAAMQSSYAYKRGLIQSEKWIPLRVVSEDEDK--DEFEQLFSETEAPVEFDVTPA------AYLRALSYR-----NGDDV-----GTPSLTSDDVDMV 240          
BLAST of mRNA_Ecto-sp13_S_contig15796.4267.1 vs. uniprot
Match: A0A6G0W5K9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W5K9_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 4.160e-18
Identity = 98/319 (30.72%), Postives = 145/319 (45.45%), Query Frame = 1
Query:    4 VRPATNFAFGVIRSDELHLTPVHATMQMRPCFQHIDEAKAQEIEMDLDDPD----NGGTKEAEKPQQVSFKKKESERATAARKSSYAYKKSIEDAEPWVALEVHGQNDDRSLDEFSRMF--VDDDASANLGTTTKEFPPCERYLEGLDYMEEYDENGESFSAG-----GRGRRSLVDSIDLVTAGTGTYSPVNLPAAPVHQLGGDAKVVGYLKLAHLVPFSMLLDVTNMSPDAVLQALSAEGRQKGLLMRGNWAALPADVWPRGPPHAADCLSVAQCLLHRYGAVSRPDLQRRFPELEPATLKELLSRIAELDTVDRRW 927
            V P +N+A GV R  +LHLTPV + +QMRP   H+D+ + +E+E+D D P+    N  T    +  QV FKK++SERA AA +++YAY++ I ++E WV L ++   DD    EF ++F  V++  + ++  T+        YL  L Y E  +E G S +         G  S VD  D V A   TY                 KVV +  L  L+P S+  D    S   V   +      K  L++ +     A V                    +  +VSR  L  ++ ++ PA  K LLS  A LD   R W
Sbjct:   84 VAPVSNYAVGVFRGGQLHLTPVSSVLQMRPTMSHLDDNEDEEMEVD-DKPEKKSSNTTTGSNVEEIQVQFKKRQSERAIAAMQNTYAYRRGIIESEEWVHLNINPTPDD----EFEQLFSEVENPIAFDMSPTS--------YLRTLSYRE--NEPGPSTTEEIEDDKMEGINSTVD--DKVLAVLQTY-----------------KVVAFKTLVDLLPSSIAEDEVRASLARVATTIRGSHLPKSSLLKDHVEYRTAIVKE----------------FEKSSSVSRNALIEKY-KMPPALAKTLLSEYATLDPQTRLW 351          
BLAST of mRNA_Ecto-sp13_S_contig15796.4267.1 vs. uniprot
Match: H3GH35_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GH35_PHYRM)

HSP 1 Score: 93.2 bits (230), Expect = 1.620e-17
Identity = 94/310 (30.32%), Postives = 142/310 (45.81%), Query Frame = 1
Query:   16 TNFAFGVIRSDELHLTPVHATMQMRPCFQHIDEAKAQEIE-MDLDDPDNGGTKEAEKPQQVSFKKKESERATAARKSSYAYKKSIEDAEPWVALEVHGQNDDRSLDEFSRMFVDDDASANLGTTTKEFPPCERYLEGLDYMEEYDENGESFSAGGRGRRSLVDSIDLVTAGTGTYSPVNLPAAPVHQLGG-DAKVVGYLKLA---HLVPFSMLLDV-TNMSPDAVLQALSAEGRQKGLLMRGNWAALPADVWPRGPPHAADCLSVAQCLLHRYGAVSRPDLQRRFPELEPATLKELLSRIAELDTVDRRW 927
            TN+A GV R  +LHLTP+ + MQMRP   HID+A  +E E M++++       E  K  Q  FKKK+SERA +A ++SYAYKK   DAE W+ L+V  ++   + DEF  +F + +       T  E      Y++ + Y      +  +  +      +  D  D             +  A  H L G DAK    L+L     ++ F  L  + ++ S + VL AL    +   + +RG      A +  RG        S+ + L      VSR DL  +F  L+    K +LS  A L+   R+W
Sbjct:   95 TNYAVGVFRQGQLHLTPLSSVMQMRPSLSHIDDAVNEEEEDMEVEEKVEAPAAEM-KEVQFQFKKKQSERALSAIQNSYAYKKQQIDAENWIELQVQDKSSSGADDEFENLFSEKEEEVVSSMTPDE------YIKAMQYRAMASVDNPAAPS----NPAQTDEEDE------EQKDEAMEPAKGHLLEGVDAKYSDVLRLLATDQILHFDTLAKLLSSRSEEEVLDAL----KHVAVHVRGRLLPSSALIC-RGEATVRARDSIIKALAKTPSGVSRMDLVEKF-SLDADVAKTILSEFAVLEPESRKW 381          
BLAST of mRNA_Ecto-sp13_S_contig15796.4267.1 vs. uniprot
Match: A0A8K1CTI8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTI8_PYTOL)

HSP 1 Score: 92.4 bits (228), Expect = 2.790e-17
Identity = 95/319 (29.78%), Postives = 141/319 (44.20%), Query Frame = 1
Query:   16 TNFAFGVIRSDELHLTPVHATMQMRPCFQHIDEAKAQEIEMDLDDPDNGGTKEAE---KPQQVSFKKKESERATAARKSSYAYKKSIEDAEPWVALEVHGQNDDRSLDEFSRMFVDDDASANLGTTTKEFPPCERYLEGLDYMEEYDENGESFSAGGRGRRSLVDSIDLVTAGTGTYSPVNLPAAPVHQLGGDAKVVGYLKLAHLVPFSMLLDVTNMSPDAVLQALSAEGRQKGLLMRGNWAALPADVWPRGPPHAADCL-SVAQCLLHRYGAVSRPDLQRRFPELEPATLKELLSRIAELDTVDRRWVPKVKDGLTFG 960
            TN+A GV R  +LHLTP+   +QMRP   HIDEA   ++E D+D       KEAE   K  Q  FKKK+SERA +A ++SYAYKK   +AE W  L V  +    +  EF  +F + +       TT+E      YL  L Y       G + +  GR   +         + T +  P +L            +V+  L   H++ FS L+++    P+     L+   R   + +RG    LP   +      A     ++   L  +   VSR +L  +   L+   +K++L   A LD   R+W  K     TF 
Sbjct:   94 TNYAVGVFREGQLHLTPISGVLQMRPSLAHIDEA-VDDVEEDVDMAMEEEQKEAENAVKEVQFQFKKKQSERAISAIQNSYAYKKQQINAETWRELRVFDKESATTETEFENLFSEREEDVISTMTTEE------YLRALRYRHA----GAAAATTGRPETTSDAEEKEERSATASVDPNHL------------EVLQRLMTDHILHFSDLVELLPSRPE---DELAEAVRHVAVSIRGR--LLPKSSFVCSSEEATRTREAILNELSKKPVGVSRMELVEKHG-LDADAVKKILENFAVLDQATRQWSFKRPHDDTFA 383          
BLAST of mRNA_Ecto-sp13_S_contig15796.4267.1 vs. uniprot
Match: A0A0N7L4J2_PLAHL (Dna-directed rna polymerase iii subunit rpc5-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L4J2_PLAHL)

HSP 1 Score: 92.0 bits (227), Expect = 3.770e-17
Identity = 95/311 (30.55%), Postives = 144/311 (46.30%), Query Frame = 1
Query:   16 TNFAFGVIRSDELHLTPVHATMQMRPCFQHIDEAKAQEIEMDLDD---PDNGGTKEAEKPQQVSFKKKESERATAARKSSYAYKKSIEDAEPWVALEVHGQNDDRSLDEFSRMFVDDDASANLGTTTKEFPPCERYLEGLDYMEEYDENGESFSAGGRGRRSLVDSIDLVTAGTGTYSPVNLPAAPVHQLGGDAK---VVGYLKLAHLVPFSMLLDVT-NMSPDAVLQALSAEGRQKGLLMRGNWAALPADVWPRGPPHAADCLSVAQCLLHRYGAVSRPDLQRRFPELEPATLKELLSRIAELDTVDRRW 927
            +N+A GV R  +LHLTP+ + MQMRP   HID+A A E E DL++   P     KE     Q  FKKK+SERA +A ++SYAYKK   DAE W+ L+V  +N   + +EF  +F + +    + T T +     +Y++ L Y     ++  + +       + V + D        + P  LP       G D K   V   LK   ++ F ML  +   +S   +  AL    +   +  RG    + A V  RG         + Q L      V+R +L   F  L+   +K +LS +A L++  R W
Sbjct:   89 SNYAVGVFRQGQLHLTPLTSIMQMRPSLSHIDDA-ANEEEEDLEEKIEPPPAELKEV----QFQFKKKQSERAISAIQNSYAYKKQQIDAENWIELQVQDKNSCGAEEEFENLFSEKEEEV-VSTMTPD-----QYIKALQYRTVASDDKTASN-----NPAHVHTDDEEKEDAMDFIPQILPD------GLDTKYLEVQRLLKTDQIMHFDMLATLLPTLSEKDICDAL----KHIAIHARGRLLPISALVC-RGETMVRTRNYIIQALSQAPNGVTRTELAETF-SLDADAVKTILSEVAVLESTTRTW 371          
BLAST of mRNA_Ecto-sp13_S_contig15796.4267.1 vs. uniprot
Match: A0A2D4BK22_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK22_PYTIN)

HSP 1 Score: 89.7 bits (221), Expect = 2.420e-16
Identity = 95/332 (28.61%), Postives = 144/332 (43.37%), Query Frame = 1
Query:    4 VRPATNFAFGVIRSDELHLTPVHATMQMRPCFQHIDEA-----KAQEIEMDLDDPDNGGTKEAEKPQQVSFKKKESERATAARKSSYAYKKSIEDAEPWVALEVHGQNDDRSLDEFSRMFVDDDASANLGTTTKEFPPCERYLEGLDYMEEYDENGESFSAGGRGRRSLVDSIDLVTAGTGTYSPVNLPAAPVHQLGGDAKVVGYLKLAHLVPFSMLLDVT-NMSPDAVLQALSAEGRQKGLLMRGNWAALPADVWPRGPPHAADCLSVA-QCLLHRYGAVSRPDLQRRFPELEPATLKELLSRIAELDTVDRRWVPKVKDGLTFGMEHPEI 978
            V P +N+A GV R  +LHLTPV A +QMRP   HID+A       ++++M+ +   +   + A K  Q  FKKK SERA  A ++SYAYKK   +AE W  L+VH +    +  EF  +F + +    + T +      E YL+ L Y     +N            S  D+  L    T        P + V     D   +  L   H+  F  L+ +    S + VL A+S    +  + +RG    LP   +      A     V  + L  +   VSR ++  +   L+ A  K++L   A LD+  R W  K     +F    P +
Sbjct:   85 VPPLSNYAVGVFRQGQLHLTPVSAVVQMRPSLAHIDDAIEDXXXXRDVDMEQE---HKSEESAVKEVQFQFKKKPSERAITAIQNSYAYKKQQINAETWRELKVHDRESATTESEFENLFSEREEDV-ISTMS-----AEEYLKALRYRTAATDNHSHXXXXXXXXGSDADADKLEQRVT--------PLSSVD--ASDLDTLQCLMTEHIAHFDDLVKLLPKRSEEEVLAAVS----RVAVSVRGR--LLPKSEYVSANEAAVHARQVILEALAKKPSGVSRVEIVEKHA-LDAALAKKILESFASLDSTTRLWSFKRDHDDSFVKRFPAV 390          
BLAST of mRNA_Ecto-sp13_S_contig15796.4267.1 vs. uniprot
Match: A0A024U1A5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U1A5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 6.920e-16
Identity = 86/316 (27.22%), Postives = 149/316 (47.15%), Query Frame = 1
Query:    4 VRPATNFAFGVIRSDELHLTPVHATMQMRPCFQHID-EAKAQEIEMDLDDPDNGGTKEAEKPQQVSFKKKESERATAARKSSYAYKKSIEDAEPWVALEVHGQNDDRSLDEFSRMFVDDDASANLGTTTKEFPPCERYLEGLDYMEEYDENGESFSAGGRGRRSLVDSIDLVTAGTGTYSPVNLPAAPVHQLGGDAKVVGYLKLAHLVPFSMLLDVTNMSPDAVLQALSAEGRQKGLLMRGNWAALPADVWPRGPPHAADCLSVAQCLLHRYGAVSRPDLQRRFPELEPATL-KELLSRIAELDTVDRRWVPKVKD 945
            + P +N+A GV R  +LHLTPV + +QMRP   H+D E +  + +MD+  P    +  A +  QV   K++SERA AA ++SYAYK+S+  +E W+ L ++   +D    EF ++F D +       T +       YL  L Y ++  +             S+  ++D   A TG  S  N+  +       D +V+  L+   ++ F+ L ++  +     + A      +   ++RG   A  + + P  P   A  ++     +H    +SR D+ +++    PA L K LL+  A L+  +R W  K+ D
Sbjct:   86 IAPVSNYAVGVFRDGQLHLTPVTSILQMRPTMSHLDDEDEKDDNDMDVSTPVAPTSAAAPEEVQVQVVKRQSERALAAMQNSYAYKRSVIQSEKWMDLTINPTEED----EFEQLFSDVEVPVPFDVTPQ------AYLNALSYRQDEPD-----------AVSVATAMDNKAADTGLNSTGNMNKSA----SLDDRVLAVLQTYKVLHFNQLCELLPLESRHEIHAALP---RVATIVRGCVVAKSSRL-PDHPDFRAAIVAELANAVH----ISRNDVIQKYAI--PAMLAKTLLTDYAVLNPANRLWTLKLPD 366          
BLAST of mRNA_Ecto-sp13_S_contig15796.4267.1 vs. uniprot
Match: A0A484DWJ2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DWJ2_BRELC)

HSP 1 Score: 85.5 bits (210), Expect = 7.080e-15
Identity = 89/331 (26.89%), Postives = 145/331 (43.81%), Query Frame = 1
Query:   16 TNFAFGVIRSDELHLTPVHATMQMRPCFQHIDEA-KAQEIEMDLDD---PDNGGTKEAEKPQQVSFKKKESERATAARKSSYAYKKSIEDAEPWVALEVHGQNDDRSLDEFSRMFVDDDASANLGTTTKEFPPCERYLEGLDYMEEYDENGESFSAGGRGRRSLVDSIDLVTAGTGTYSP--------VNLPAAPVHQLGGDAKVVGYLKLAHLVPFSMLLDVTNMSPDAVLQALSAEGRQKGLLMRGNWAALPADVWPRGPPHAADCLSVAQCLLHRYGAVSRPDLQRRFPELEPATLKELLSRIAELDTVDRRWVPKVKDGLTFGMEHP 972
            +N+A GV R  +LHLTP+ + +QMRP   +ID+A   +EI++D+++   P     KE     Q  FKKK+SERA +A ++SYA+KK   DAE W+ L+VH  +   + DEF  +F + +          +  P + Y+  L Y      +  +  A      + VD+ D  T    T  P        VN   + V ++    +++ +  LA L+P     D+ +      +  L        L+ RG       +              + + L      VSR +L ++   LE +  K +LS  A LD   R+W  ++     F    P
Sbjct:   90 SNYAVGVFRQGQLHLTPLSSILQMRPSLSYIDDAINEEEIDIDMEEKVEPPPAEMKEV----QFQFKKKQSERALSAIQNSYAFKKQQIDAENWIELQVHELSTAGADDEFENLFSEKEEEI-----VSDMTPAQ-YIRALQYRALATADKSAALA----NPAQVDAEDN-TEMDDTMEPIKGHLLDGVNAKYSDVLRILATDQIMHFNTLALLLPTHKEEDLIDALEHVAIHVLGRLLPASALIFRGETTIRARN-------------EIIKALAKSPTGVSRTELVKQ-TLLEASIAKNILSEFAILDPATRKWSFRLGPDNLFAKRFP 391          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15796.4267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNL4_ECTSI2.620e-23397.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CI66_9STRA1.070e-3533.33Sin-like protein conserved region-domain-containin... [more]
A0A067C288_SAPPC9.280e-1937.71Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A6G0W5K9_9STRA4.160e-1830.72Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
H3GH35_PHYRM1.620e-1730.32Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A8K1CTI8_PYTOL2.790e-1729.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0N7L4J2_PLAHL3.770e-1730.55Dna-directed rna polymerase iii subunit rpc5-like ... [more]
A0A2D4BK22_PYTIN2.420e-1628.61Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A024U1A5_9STRA6.920e-1627.22Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A484DWJ2_BRELC7.080e-1526.89Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15796contigEcto-sp13_S_contig15796:235..4059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score669.8
Seed ortholog evalue6.5e-190
Seed eggNOG ortholog2880.D7FNL4
Preferred namePOLR3E
Model size1026
KEGG rclassRC00065,RC02795
KEGG koko:K00381,ko:K03026,ko:K14721
KEGG ReactionR00435,R00441,R00442,R00443,R00858
KEGG Pathwayko00230,ko00240,ko00920,ko01100,ko01120,ko03020,ko04623,ko05169,map00230,map00240,map00920,map01100,map01120,map03020,map04623,map05169
KEGG ModuleM00176,M00181
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons7
EggNOG free text desc.transcription by RNA polymerase III
EggNOG OGsKOG2354@1,KOG2354@2759
Ec32 ortholog descriptionDNA-directed RNA polymerase III subunit Rpc5
Ec32 orthologEc-01_005040.1
EC1.8.1.2
Cds size1026
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15796.4267.1prot_Ecto-sp13_S_contig15796.4267.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15796 235..4059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462834.9665747-CDS-Ecto-sp13_S_contig15796:234..3371681462834.9665747-CDS-Ecto-sp13_S_contig15796:234..337Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15796 235..337 -
1681462834.9773927-CDS-Ecto-sp13_S_contig15796:572..6831681462834.9773927-CDS-Ecto-sp13_S_contig15796:572..683Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15796 573..683 -
1681462834.9858892-CDS-Ecto-sp13_S_contig15796:930..11511681462834.9858892-CDS-Ecto-sp13_S_contig15796:930..1151Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15796 931..1151 -
1681462834.9944701-CDS-Ecto-sp13_S_contig15796:1551..16571681462834.9944701-CDS-Ecto-sp13_S_contig15796:1551..1657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15796 1552..1657 -
1681462835.0026116-CDS-Ecto-sp13_S_contig15796:2107..22951681462835.0026116-CDS-Ecto-sp13_S_contig15796:2107..2295Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15796 2108..2295 -
1681462835.01266-CDS-Ecto-sp13_S_contig15796:2814..29911681462835.01266-CDS-Ecto-sp13_S_contig15796:2814..2991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15796 2815..2991 -
1681462835.0275226-CDS-Ecto-sp13_S_contig15796:3939..40591681462835.0275226-CDS-Ecto-sp13_S_contig15796:3939..4059Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15796 3940..4059 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15796.4267.1

>prot_Ecto-sp13_S_contig15796.4267.1 ID=prot_Ecto-sp13_S_contig15796.4267.1|Name=mRNA_Ecto-sp13_S_contig15796.4267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=342bp
RVRPATNFAFGVIRSDELHLTPVHATMQMRPCFQHIDEAKAQEIEMDLDD
PDNGGTKEAEKPQQVSFKKKESERATAARKSSYAYKKSIEDAEPWVALEV
HGQNDDRSLDEFSRMFVDDDASANLGTTTKEFPPCERYLEGLDYMEEYDE
NGESFSAGGRGRRSLVDSIDLVTAGTGTYSPVNLPAAPVHQLGGDAKVVG
YLKLAHLVPFSMLLDVTNMSPDAVLQALSAEGRQKGLLMRGNWAALPADV
WPRGPPHAADCLSVAQCLLHRYGAVSRPDLQRRFPELEPATLKELLSRIA
ELDTVDRRWVPKVKDGLTFGMEHPEIVELEEERWTLHESILK
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mRNA from alignment at Ecto-sp13_S_contig15796:235..4059-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15796.4267.1 ID=mRNA_Ecto-sp13_S_contig15796.4267.1|Name=mRNA_Ecto-sp13_S_contig15796.4267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15796:235..4059- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGTGCGGCCGGCGACCAACTTCGCGTTCGGCGTGATTCGGAGCGACGA GCTACATCTAACCCCGGTCCACGCCACCATGCAGATGCGTCCCTGCTTTC AGCACATCGATGAGGCCAAGGTGGGCGGGGTTGTTGCGTGTTTAGTAGGC TTGACTTCGATGGGGTTGTCGTGTGGTCTCTGCTGTCTGCAGTCCCTTTG TTTCGTCCGACTGGTGGACTAAGCATCAGCTGGGAACCGGTGGAGAGTTA GAGAGGGAGAGAGAGAGGAGTACGAGAGGGAGGTAAATAAAGAGGGAGAC AGAGGGAGAGAAAAGAGACGATACGAGTTGTCGGCCAAAATAGAAGGGTT AGAGCTATATACATACGTTTCCTTCGAAAGTGATCGCTACGGACAGGATT GCATTGATAACTGTCGTCTCCCGCCAGTCCACACCAACAACACCTGGCAC CATCGGTGCGACCTTTGTCTGTTGAAATCTCTGCTTTGTGTTGGTTGTTT GGACGTCCTCGTATGGCATCGTCCTTGTAGTCCCGCTTTGTTTGCTTGCT CTTGGTGTTCCCTGGTGTCACGCTGTTCGATTGCGATGTCGGGCCAATGA ACCCCAACATCACCGGCACTGCCCGTCACCACACCCGGCCTTCTCGCTTC ACCCGTTTTTTTCTATTCTTCGTTCCTCCGCGTCGTGCCTGTACGTTTGC CTCTCCCACACCATGTGCTCTGCCTCGTCACCCACCGCGATTTACGTGCC TTGGCTCGGTCCCCACTTGAGCCCCTCATAGTCGCATGAAATCAATCCAC CGACCAAGGCCGGCCAAAACCGTCTCGGCGTTATAGGAATGCGAGGTCAA CGACCTCGGCGTGCGCTTACACATGTGTACCCCCCCCCCCGCCTTCTCTG TTTTTCGGACCACCTTTGGTAAAGTAGGAAGGAACAATTGGCCATCAGTG ATTGGTCCTGTGGGAACAGTGCTCCGTCCTCTCGAGGACACGTGGTCAAC GGTCTAAGCACTACGGCGTGCAAAATATAAGAGGACGCCCCCCCCCTCTC CACCAACCAACAATTCAGGCTCAGGAGATCGAGATGGATCTGGACGACCC CGATAACGGCGGCACCAAGGAGGCGGAGAAGCCGCAGCAGGTGTCGTTCA AAAAGAAGGAGAGCGAGCGGGCCACCGCGGCGCGAAAGTCGTCGTACGCC TACAAGAAGTCCATTGAGGACGCCGAGCCGTGGGTCGCCCTGGAGGTGTG TGTACCGGAAACGGAAGAAGTGCCTAAAGTCTTTCTCGCTTTCTCAACGA CTACGACTAGCAAGAAGGAGCACGGGAGGTAGGGATCGAGGGGGAGAGAG AGACGAAGAGAGAGAGGGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGGCAGACAGACAGACATACAGAGAGATAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGATTCTGAGGCGACCGCAGAGTTGGTGGACTAA TGGTTTTACGATATTGGTGTAAGTTTTTAGCTTTTGCCCTTGCAACACTC GTGCGTTTTAGCACTGTTGAGTCGTGGGGACACGACACGGCACACGTCAG AGCCGCAGTTGGGTCCGAAGGATACACCGGGTTGTAAATCTAGTCATTCG CAGCGGTGAAATTTAATTTTCCCTACCTTGCCAAATCGCCGGAGGGGAGG AAATCAATCCTCTCTCTATGTCTGACTGCGGATACGGCTGCGCCGGGAAC CCGGATTGCGCCAGGTGCACGGCCAGAACGACGATCGGTCCCTGGACGAG TTCTCCCGCATGTTCGTCGACGACGACGCCAGCGCCAATCTCGGGACGAC AACCAAGGAGTTCCCCCCGTGCGAGCGTTACCTCGAGGGGCTGGATTACA TGGAGGAGTACGACGAGAACGGGGAGTCTTTCTCCGCCGGGGGCAGGGGA CGGTGAGCATACGTTTTTTTTAAATGAAAGTTTATCGGTGGTGGTGCGTG CTGTTTGGTCCGGTGAGGTGGAGATTCTTTTGGTTTCGAAGGCCGGGTGG TTGTGGCGGCTGCTGTGGTTGGTGGTGGAGGCTGTGGTGCGTGATGGTGT GGGGGGTTTGCTTGTGCGTGAGGTGGTTATGAAGCAGGCACCGACAAACT GTGTCTTGCTCGATTGCTATTGTTCCCGCGCGATGCATAACCTTCCCGAG GTGTTTTCAACTACCAATGGATAGGCTAGATGTAACAGCTCTTGGCGCCC CCCGTACGTTTCGCCGCGCGGACGGGCGTAGCGTTTCCCCCTCTTGTTGC TTGCGCCCCCGGCACGCAAAGCTGACGCCCTCTCTACATGCAAGTTCCGT GTTCCCCCCTGCTGTTGCCTTCGTTGGCTTCGGTGATCTTGCTGCTCGCG AGCAGATCGCTGGTCGATAGCATTGACCTGGTCACCGCCGGAACGGGCAC GTACTCTCCCGTCAACCTTCCCGCGGCTCCCGTGCACCAGCTGGGGGGGG ATGCCAAGGTACGCTTGCTAGATGGCAGTGGCACCGTGTTCATGCCGTTG TTTTCTCGATTTGACACATCTCTAGAGTACCTTACTAGCGAGAGGTTGAG TACGGACTGTTGCAGGGGTTGCGGTGTAGTTGCGGCCATGTACGGTTGAG TGTTCACGCATGAAACAATGCCGTTCCCTCACGGAAAATGTTGCGTGTTG TCGACATTCTGAACGGGTCTCCAGTATCTGGAGCAGCTCCCAAGGACTAA AAGATGCTAGAAGACATTTTAGCCCCCGCTCGTCCATGTCTGTACGTATC ACCCCCATCCGCCGTCGTCAAATACCTCCTGTTTTGTCTGCGTCACCCCC CCCCCCCCCCCCTACTCTCGCGTACTCTCCGCCCTGTGCTCCTTTTTCAC CCTGGCAGGTTGTCGGGTATCTCAAGCTGGCGCACCTCGTGCCCTTCAGC ATGCTGCTGGACGTGACCAACATGTCCCCGGACGCCGTGCTTCAGGCGCT GAGCGCGGAAGGGCGGCAGAAGGGGCTGCTGATGCGAGGCAACTGGGCGG CTCTGCCGGCGGACGTTTGGCCGCGGGGCCCCCCGCACGCCGCCGACTGC TTGTCGGTCGCGCAGTGTTTGCTTCACAGGTGGGCATGGCAGGCATTCTG CTGCTGCTGCGGCCGGCCGGCCTCTCCGGCCGGTCCCCCTCGACCGCGTC ATCACGCGGCCTTTGTGGTTCGCGATCATCAGTTCTTTGGACCTACCGTT TTTGGTGTGTGTTTCATCCTCTACCGCTATTGCGTTCACCAGTCTACACG TTCTGGTACTAATGATGCTGTCTGATTGTCACGTGTGTTTTGCTCGCCGT CCGCTCCCCGGCGCCCGATGTTACAGATACGGAGCCGTGAGCCGACCGGA CTTGCAGAGACGTTTTCCCGAACTCGAACCCGCAACGCTCAAGGAACTCC TCTCGCGCATCGCCGAGCTCGACACGGTCGACAGAAGGTGAGAGGTGGCT CACGCCATGTATGCTATTACTGGTGAAGTGTTTTCCCTTTGGAGAGCAAC CAAGAGGCGGTCCTGAGAATATGCGTCTTCCGGGGGTGATCAAAACTGGT GTGACTTGGTATTGCTATTTTCTCTCTTTTGTCTCCTTGCCCAACAGACA CGAAACGCCCCGTGGAGCATTTTTTTTTTCCATTGATTCATGGCGTGGAC TGCTGACTTCTCATGCCCACAGGTGGGTGCCCAAGGTTAAGGACGGACTG ACATTCGGCATGGAGCACCCCGAGATCGTCGAGCTCGAGGAGGAGAGATG GACGCTGCACGAGTCCATCCTGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15796:235..4059-

>mRNA_Ecto-sp13_S_contig15796.4267.1 ID=mRNA_Ecto-sp13_S_contig15796.4267.1|Name=mRNA_Ecto-sp13_S_contig15796.4267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15796:235..4059- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGTGCGGCCGGCGACCAACTTCGCGTTCGGCGTGATTCGGAGCGACGA
GCTACATCTAACCCCGGTCCACGCCACCATGCAGATGCGTCCCTGCTTTC
AGCACATCGATGAGGCCAAGGCTCAGGAGATCGAGATGGATCTGGACGAC
CCCGATAACGGCGGCACCAAGGAGGCGGAGAAGCCGCAGCAGGTGTCGTT
CAAAAAGAAGGAGAGCGAGCGGGCCACCGCGGCGCGAAAGTCGTCGTACG
CCTACAAGAAGTCCATTGAGGACGCCGAGCCGTGGGTCGCCCTGGAGGTG
CACGGCCAGAACGACGATCGGTCCCTGGACGAGTTCTCCCGCATGTTCGT
CGACGACGACGCCAGCGCCAATCTCGGGACGACAACCAAGGAGTTCCCCC
CGTGCGAGCGTTACCTCGAGGGGCTGGATTACATGGAGGAGTACGACGAG
AACGGGGAGTCTTTCTCCGCCGGGGGCAGGGGACGCAGATCGCTGGTCGA
TAGCATTGACCTGGTCACCGCCGGAACGGGCACGTACTCTCCCGTCAACC
TTCCCGCGGCTCCCGTGCACCAGCTGGGGGGGGATGCCAAGGTTGTCGGG
TATCTCAAGCTGGCGCACCTCGTGCCCTTCAGCATGCTGCTGGACGTGAC
CAACATGTCCCCGGACGCCGTGCTTCAGGCGCTGAGCGCGGAAGGGCGGC
AGAAGGGGCTGCTGATGCGAGGCAACTGGGCGGCTCTGCCGGCGGACGTT
TGGCCGCGGGGCCCCCCGCACGCCGCCGACTGCTTGTCGGTCGCGCAGTG
TTTGCTTCACAGATACGGAGCCGTGAGCCGACCGGACTTGCAGAGACGTT
TTCCCGAACTCGAACCCGCAACGCTCAAGGAACTCCTCTCGCGCATCGCC
GAGCTCGACACGGTCGACAGAAGGTGGGTGCCCAAGGTTAAGGACGGACT
GACATTCGGCATGGAGCACCCCGAGATCGTCGAGCTCGAGGAGGAGAGAT
GGACGCTGCACGAGTCCATCCTGAAG
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