mRNA_Ecto-sp13_S_contig15795.4266.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15795.4266.1
Unique NamemRNA_Ecto-sp13_S_contig15795.4266.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15795.4266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15795contigEcto-sp13_S_contig15795:2762..3501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size740
Hectar predicted targeting categorymitochondrion
Exons1
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462834.9147303-UTR-Ecto-sp13_S_contig15795:2761..28761681462834.9147303-UTR-Ecto-sp13_S_contig15795:2761..2876Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15795 2762..2876 +
1681462834.9357123-UTR-Ecto-sp13_S_contig15795:3257..35011681462834.9357123-UTR-Ecto-sp13_S_contig15795:3257..3501Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15795 3258..3501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462834.925675-CDS-Ecto-sp13_S_contig15795:2876..32571681462834.925675-CDS-Ecto-sp13_S_contig15795:2876..3257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15795 2877..3257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15795.4266.1prot_Ecto-sp13_S_contig15795.4266.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15795 2877..3257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15795.4266.1

>prot_Ecto-sp13_S_contig15795.4266.1 ID=prot_Ecto-sp13_S_contig15795.4266.1|Name=mRNA_Ecto-sp13_S_contig15795.4266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
MMRRLRGRAHRTLYSRERRNNRNTRRCVTVANENANASGILILPPKRNSP
QKIRKYREWLGCWNPIGKTQHPQKSPPPKTYRSLYSWRRRTAPFNPASLK
TSHETLTLILYSRTLLDLLTEDKDLL*
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mRNA from alignment at Ecto-sp13_S_contig15795:2762..3501+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15795.4266.1 ID=mRNA_Ecto-sp13_S_contig15795.4266.1|Name=mRNA_Ecto-sp13_S_contig15795.4266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=740bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15795:2762..3501+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCTTTAGTTTATTGCAGAAAAACTCCGAAACCGTAGCAGCTTGGATGC
CTGATAGCCCCCCCCCGGCATCAGCAGGTGAAACAACTCAAGACAGTCCT
ACCCCGTGATAAATCATGATGCGTAGGCTGCGGGGACGCGCCCACAGAAC
GCTTTATTCAAGGGAACGACGAAATAATAGAAATACCCGCCGTTGTGTGA
CCGTCGCAAATGAAAACGCGAACGCTTCGGGAATACTTATTCTCCCTCCC
AAACGCAACTCCCCCCAAAAAATACGCAAATACCGCGAGTGGCTTGGTTG
TTGGAACCCAATCGGAAAAACTCAACATCCCCAGAAATCCCCGCCTCCAA
AAACGTATCGGAGCTTATACTCCTGGAGGAGGCGAACCGCACCATTTAAC
CCTGCCTCCCTCAAAACATCACACGAAACATTAACACTAATATTGTACTC
TAGGACCCTGTTGGATTTGCTGACAGAAGATAAAGACTTGCTCTGAAAAA
CCTTCTTCTTCCTGCCCTGGCACCCACGAAGAATCAATACACTACAAGTT
GTTCCTAAGCACAGCACGACGTTGATAAATAGCTAACAATCAAATACGAT
GCGCTGAAACATTTCCACCCCAAAACGGCGAACTTCCCATTTTTTTTTCC
GCGGCCCCCGTAAAACCGGGCGTGCTTCGTCCCGGCGTTGCAGCGATGCG
AGGGTAACGGTCTAACGACTTCGGCATGTGTTTACATGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15795:2762..3501+

>mRNA_Ecto-sp13_S_contig15795.4266.1 ID=mRNA_Ecto-sp13_S_contig15795.4266.1|Name=mRNA_Ecto-sp13_S_contig15795.4266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15795:2762..3501+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCGTAGGCTGCGGGGACGCGCCCACAGAACGCTTTATTCAAGGGA
ACGACGAAATAATAGAAATACCCGCCGTTGTGTGACCGTCGCAAATGAAA
ACGCGAACGCTTCGGGAATACTTATTCTCCCTCCCAAACGCAACTCCCCC
CAAAAAATACGCAAATACCGCGAGTGGCTTGGTTGTTGGAACCCAATCGG
AAAAACTCAACATCCCCAGAAATCCCCGCCTCCAAAAACGTATCGGAGCT
TATACTCCTGGAGGAGGCGAACCGCACCATTTAACCCTGCCTCCCTCAAA
ACATCACACGAAACATTAACACTAATATTGTACTCTAGGACCCTGTTGGA
TTTGCTGACAGAAGATAAAGACTTGCTCTGA
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