mRNA_Ecto-sp13_S_contig15790.4264.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15790.4264.1 vs. uniprot
Match: D7G7J8_ECTSI (Nucleolar complex associated 2 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7J8_ECTSI) HSP 1 Score: 390 bits (1003), Expect = 1.290e-125 Identity = 278/326 (85.28%), Postives = 281/326 (86.20%), Query Frame = 1
Query: 1 CNIGDEAAEGKAGSGGGGSDVQQKFRIPSSEVYNELMVSCLEGLHPAFMHLLFPGRESKTAAEPPVTASGSSSEGATKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLQGGSARQSVTGAGAERGGAPQEDGGGGAVARGRSRVAATVILTKEDFRAAALLPAWKPIQPALYSFFKSLLHVLDELHDRALLSFLLSRLEHYVPLLVPFPGLARGFLKTLLGLWGGAGAEAKSSGGGTEQEGEEAERVRLLAYLRVRQMAAALPFPFVEGCMKRLYLAFAKRARAPPASQSGKVSLRVMEG 978
C++GDEAAEGKAGSGGGGS VQQKFRIPSSEVYNELMV LEGLH AFMHLLFPGRESKTAAEPPVTA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A+ARGRSRVAA VILTKEDFRAAALLPAWKPIQPALYSFFKSLLHVLDELHDRALLSFLLSRLEHYVPLLVPFPGLARGFLKTLLGLWGGAGAEAKSSGGGTEQEGEEAERVRLLAYLRVRQMAAALPFPFVEGCMKRLYLAFAKRARAPPASQSGKVSLRVMEG
Sbjct: 239 CHLGDEAAEGKAGSGGGGSGVQQKFRIPSSEVYNELMVCSLEGLHSAFMHLLFPGRESKTAAEPPVTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALARGRSRVAAAVILTKEDFRAAALLPAWKPIQPALYSFFKSLLHVLDELHDRALLSFLLSRLEHYVPLLVPFPGLARGFLKTLLGLWGGAGAEAKSSGGGTEQEGEEAERVRLLAYLRVRQMAAALPFPFVEGCMKRLYLAFAKRARAPPASQSGKVSLRVMEG 564
BLAST of mRNA_Ecto-sp13_S_contig15790.4264.1 vs. uniprot
Match: A0A448Z9V8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9V8_9STRA) HSP 1 Score: 101 bits (251), Expect = 5.940e-20 Identity = 55/125 (44.00%), Postives = 76/125 (60.80%), Query Frame = 1
Query: 568 WKPIQPALYSFFKSLLHVLDELHDRALLSFLLSRLEHYVPLLVPFPGLARGFLKTLLGLWGGAGAEAKSSGGGTEQEGEEAERVRLLAYLRVRQMAAALPFPFVEGCMKRLYLAFAKRARAPPAS 942
W + P LY+FFK+ H+L E + L+ F+L L Y+P + P+P LA LKTL LW A SS E+ + VRL A+LR+RQ+A PFPF+E C+K+LYLA+A+RA+ AS
Sbjct: 348 WNDLNPILYTFFKATAHILTEAKESQLVVFVLKALFEYIPYMTPYPRLAETMLKTLTSLWS---APIDSS--------EDYQVVRLHAFLRIRQLAMTQPFPFIEECLKKLYLAYAQRAKFATAS 461
BLAST of mRNA_Ecto-sp13_S_contig15790.4264.1 vs. uniprot
Match: W7T2Z2_9STRA (Uncharacterized protein family UPF0120 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Z2_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 2.720e-19 Identity = 54/123 (43.90%), Postives = 81/123 (65.85%), Query Frame = 1
Query: 559 LPAWKPIQPALYSFFKSLLHVLDELHDRALLSFLLSRLEHYVPLLVPFPGLARGFLKTLLGLWGGAGAEAKSSGGGTEQEGEEAERVRLLAYLRVRQMAAALPFPFVEGCMKRLYLAFAKRAR 927
LPA++ ++PALY K+L ++L ++ + +LL+F LSRLE ++P LV FP LA+ +L+TLL LW + EA V+L+A+LRVRQ A LPFPF+E C+K YL++A+ A+
Sbjct: 347 LPAFRSLRPALYRSLKALHYLLGQITEPSLLTFTLSRLERFLPFLVLFPRLAKFYLRTLLSLWAAS----------------EALDVKLVAFLRVRQAATVLPFPFLEHCLKGAYLSYARNAK 453
BLAST of mRNA_Ecto-sp13_S_contig15790.4264.1 vs. uniprot
Match: A0A7S1D2V9_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D2V9_CYCTE) HSP 1 Score: 96.3 bits (238), Expect = 5.800e-19 Identity = 54/120 (45.00%), Postives = 73/120 (60.83%), Query Frame = 1
Query: 568 WKPIQPALYSFFKSLLHVLDELHDRALLSFLLSRLEHYVPLLVPFPGLARGFLKTLLGLWGGAGAEAKSSGGGTEQEGEEAERVRLLAYLRVRQMAAALPFPFVEGCMKRLYLAFAKRAR 927
WK ++ + +FF + LHVL + LL+F+L L YVPLL PFP +A+ LK LW A SS E+ + VRL A+LR+RQMA PFPF+E C+K+ YLA+AKRA+
Sbjct: 132 WKDLRSIMRTFFLATLHVLSAAKEPELLTFVLKALAKYVPLLTPFPKIAQQMLKMFTSLWS---APLDSS--------EDYQVVRLNAFLRIRQMAVTQPFPFIEDCLKKTYLAYAKRAK 240
BLAST of mRNA_Ecto-sp13_S_contig15790.4264.1 vs. uniprot
Match: A0A7S4MG20_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MG20_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 7.000e-19 Identity = 57/120 (47.50%), Postives = 74/120 (61.67%), Query Frame = 1
Query: 568 WKPIQPALYSFFKSLLHVLDELHDRALLSFLLSRLEHYVPLLVPFPGLARGFLKTLLGLWGGAGAEAKSSGGGTEQEGEEAERVRLLAYLRVRQMAAALPFPFVEGCMKRLYLAFAKRAR 927
W ++ L F +S LH+L E + ALLSF+L L YVPLL PFP LA+ FL+TL LW A +S EE + VRL ++LRVRQ+A PFPFVE C+K YL +A+RA+
Sbjct: 220 WDELRTYLQLFLRSSLHLLSEAKEPALLSFVLKSLSPYVPLLTPFPKLAKSFLQTLSKLWS---APLDTS--------EEYQVVRLRSFLRVRQLAVTQPFPFVEDCLKSSYLCYARRAK 328
BLAST of mRNA_Ecto-sp13_S_contig15790.4264.1 vs. uniprot
Match: A0A1E7FSB6_9STRA (Noc2-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSB6_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 8.540e-19 Identity = 55/125 (44.00%), Postives = 74/125 (59.20%), Query Frame = 1
Query: 568 WKPIQPALYSFFKSLLHVLDELHDRALLSFLLSRLEHYVPLLVPFPGLARGFLKTLLGLWGGAGAEAKSSGGGTEQEGEEAERVRLLAYLRVRQMAAALPFPFVEGCMKRLYLAFAKRARAPPAS 942
W P L++FFKS H+L E + L+ F+L L Y+P + PFP LA LK L LW A SS E+ + VRL A+LR+RQ+A PFPF+E C+K+LYLA+A+RA+ AS
Sbjct: 287 WNDFSPILFTFFKSTTHILSEAKEPELVVFVLKALFDYIPYMTPFPRLAETMLKILTTLWS---APIDSS--------EDYQVVRLHAFLRIRQLAMTQPFPFIEECLKKLYLAYAQRAKFATAS 400
BLAST of mRNA_Ecto-sp13_S_contig15790.4264.1 vs. uniprot
Match: B7FQ14_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQ14_PHATC) HSP 1 Score: 95.1 bits (235), Expect = 6.990e-18 Identity = 53/127 (41.73%), Postives = 76/127 (59.84%), Query Frame = 1
Query: 568 WKPIQPALYSFFKSLLHVLDELHDRALLSFLLSRLEHYVPLLVPFPGLARGFLKTLLGLWGGAGAEAKSSGGGTEQEGEEAERVRLLAYLRVRQMAAALPFPFVEGCMKRLYLAFAKRARAPPASQS 948
W I+P + SFF+S LHVLDE + L++ ++ L Y+P L F +A G LK L LW A SS E+ + VRL A+ R+RQ+A PFPFVE C+K++YLA+A+RA+ +S +
Sbjct: 314 WDNIRPIILSFFRSTLHVLDEAKEPELVTVIVKALSKYIPFLSAFERIAEGMLKALTALWS---APLDSS--------EDYQVVRLNAFFRIRQLALTQPFPFVETCLKKIYLAYARRAKLGVSSSA 429
BLAST of mRNA_Ecto-sp13_S_contig15790.4264.1 vs. uniprot
Match: A0A7S2VGJ3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VGJ3_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 6.230e-16 Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 568 WKPIQPALYSFFKSLLHVLDELHDRALLSFLLSRLEHYVPLLVPFPGLARGFLKTLLGLWGGAGAEAKSSGGGTEQEGEEAERVRLLAYLRVRQMAAALPFPFVEGCMKRLYLAFAKRAR 927
W +Q L SFF S LH++ E + LL+F+L L +Y+PL+ PFP +A LK + W A S E+ + VRL A+ R+RQ+A PFPF+E C+++ YLA+A+RA+
Sbjct: 369 WSDMQKILKSFFTSTLHIMSEAKEPELLTFILKALSNYIPLVSPFPRVAEAMLKCFVDKWS---APLDVS--------EDYQVVRLNAFFRIRQLAKTQPFPFIETCLRKTYLAYARRAK 477
BLAST of mRNA_Ecto-sp13_S_contig15790.4264.1 vs. uniprot
Match: A0A7S3PY41_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PY41_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.610e-14 Identity = 45/122 (36.89%), Postives = 72/122 (59.02%), Query Frame = 1
Query: 577 IQPALYSFFKSLLHVLDELHDRALLSFLLSRLEHYVPLLVPFPGLARGFLKTLLGLWGGAGAEAKSSGGGTEQEGEEAERVRLLAYLRVRQMAAALPFPFVEGCMKRLYLAFAKRARAPPAS 942
++P + SF K+ LH+++E + LL+F++ L +YVP L FP L++ LK L W T +E + VR+ ++LR+RQ+A PFPF+E C+K +YLA+A+ A+ AS
Sbjct: 350 LKPTIQSFIKATLHLMEEAKESKLLNFIIKSLANYVPYLSAFPQLSKALLKMLTLKWSS-----------TSDSTQEFQSVRVNSFLRIRQLALTQPFPFIEMCLKSVYLAYARSAKFANAS 460
BLAST of mRNA_Ecto-sp13_S_contig15790.4264.1 vs. uniprot
Match: F0WMP8_9STRA (Nucleolar complex protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMP8_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 2.830e-14 Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 568 WKPIQPALYSFFKSLLHVLDELHDRALLSFLLSRLEHYVPLLVPFPGLARGFLKTLLGLWGGAGAEAKSSGGGTEQEGEEAERVRLLAYLRVRQMAAALPFPFVEGCMKRLYLAFAKRAR 927
WK P L FF L+++L+E D+ + +F+L +L HY+P LVP L R LK LL +W AKS+ E ++ LLA++R+R++A +PFPF+E C+K LYL + + +
Sbjct: 297 WKKYNPLLMKFFHCLIYLLEETCDQQIQAFVLQQLAHYLPFLVPSNKLQRRILKVLLKIW------AKST---------EDHQLCLLAFVRIRELAIQIPFPFLELCLKALYLTYMRNTK 401 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15790.4264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15790.4264.1 >prot_Ecto-sp13_S_contig15790.4264.1 ID=prot_Ecto-sp13_S_contig15790.4264.1|Name=mRNA_Ecto-sp13_S_contig15790.4264.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=327bp CNIGDEAAEGKAGSGGGGSDVQQKFRIPSSEVYNELMVSCLEGLHPAFMHback to top mRNA from alignment at Ecto-sp13_S_contig15790:1118..3867+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15790.4264.1 ID=mRNA_Ecto-sp13_S_contig15790.4264.1|Name=mRNA_Ecto-sp13_S_contig15790.4264.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2750bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15790:1118..3867+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15790:1118..3867+ >mRNA_Ecto-sp13_S_contig15790.4264.1 ID=mRNA_Ecto-sp13_S_contig15790.4264.1|Name=mRNA_Ecto-sp13_S_contig15790.4264.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=981bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15790:1118..3867+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |