mRNA_Ecto-sp13_S_contig1579.4263.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1579.4263.1
Unique NamemRNA_Ecto-sp13_S_contig1579.4263.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1579.4263.1 vs. uniprot
Match: D8LR06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR06_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.720e-33
Identity = 64/74 (86.49%), Postives = 65/74 (87.84%), Query Frame = 3 
Query:    3 GQRRAFRLGGSPDEGGSCT-VITDLRQRASRCRGGSVGICRCSRRAYQGGEQQQEF-LRVGGRSRNALGNGEKT 218
            GQRR FRL GSPDEGGSCT VITDLRQRASRCRGGSVGICRCSRRAYQGGEQ Q F L V GRSR+ LGNGEKT
Sbjct:    4 GQRRTFRLDGSPDEGGSCTAVITDLRQRASRCRGGSVGICRCSRRAYQGGEQPQGFFLPVVGRSRSPLGNGEKT 77
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BLAST of mRNA_Ecto-sp13_S_contig1579.4263.1 vs. uniprot
Match: A0A6H5KB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB56_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.210e-29
Identity = 56/73 (76.71%), Postives = 59/73 (80.82%), Query Frame = 3 
Query:    3 GQRRAFRLGGSPDEGGSCTVITDLRQRASRCRGGSVGICRCSRRAYQGGEQQQEFLRVGGRSRNALGNGEKTP 221
            G  + F LGGS DEGGSC+VITDLRQRASRCRGGSV ICRCSRRAYQGGEQQQ  L VG  SR+ LGNG  TP
Sbjct:    6 GAAQGFLLGGSQDEGGSCSVITDLRQRASRCRGGSVRICRCSRRAYQGGEQQQGSLLVGWWSRSPLGNGVNTP 78
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BLAST of mRNA_Ecto-sp13_S_contig1579.4263.1 vs. uniprot
Match: D8LGJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ8_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 3.070e-15
Identity = 43/49 (87.76%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   40 MKGGAAQ-SSQISANALPDVGGAAWAFVVVVGALTRVASSSRSFC--GW 177
            MKGGAAQ SSQISANALPDVGGAAWAFVVVVGALTRV SSSR F   GW
Sbjct:    1 MKGGAAQQSSQISANALPDVGGAAWAFVVVVGALTRVVSSSRFFLAGGW 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1579.4263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR06_ECTSI2.720e-3386.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB56_9PHAE4.210e-2976.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGJ8_ECTSI3.070e-1587.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1579contigEcto-sp13_S_contig1579:15575..15797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size223
Hectar predicted targeting categorysignal peptide
Exons1
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462834.730913-CDS-Ecto-sp13_S_contig1579:15574..157961681462834.730913-CDS-Ecto-sp13_S_contig1579:15574..15796Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1579 15575..15796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1579.4263.1prot_Ecto-sp13_S_contig1579.4263.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1579 15575..15796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1579.4263.1

>prot_Ecto-sp13_S_contig1579.4263.1 ID=prot_Ecto-sp13_S_contig1579.4263.1|Name=mRNA_Ecto-sp13_S_contig1579.4263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
GASAGLFGWAVLQMKGGAAQSSQISANALPDVGGAAWAFVVVVGALTRVA
SSSRSFCGWVGGAGMHLAMERRPP
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mRNA from alignment at Ecto-sp13_S_contig1579:15575..15797+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1579.4263.1 ID=mRNA_Ecto-sp13_S_contig1579.4263.1|Name=mRNA_Ecto-sp13_S_contig1579.4263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=223bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1579:15575..15797+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCCAGCGCAGGGCTTTTCGGTTGGGCGGTTCTCCAGATGAAGGGGGG
AGCTGCACAGTCATCACAGATCTCCGCCAACGCGCTTCCAGATGTAGGGG
GGGCAGCGTGGGCATTTGTCGTTGTAGTCGGCGCGCTTACCAGGGTGGCG
AGCAGCAGCAGGAGTTTTTGCGGGTGGGTGGGAGGAGCCGGAATGCACTT
GGCAATGGAGAGAAGACCCCCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1579:15575..15797+

>mRNA_Ecto-sp13_S_contig1579.4263.1 ID=mRNA_Ecto-sp13_S_contig1579.4263.1|Name=mRNA_Ecto-sp13_S_contig1579.4263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1579:15575..15797+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCCAGCGCAGGGCTTTTCGGTTGGGCGGTTCTCCAGATGAAGGGGGG
AGCTGCACAGTCATCACAGATCTCCGCCAACGCGCTTCCAGATGTAGGGG
GGGCAGCGTGGGCATTTGTCGTTGTAGTCGGCGCGCTTACCAGGGTGGCG
AGCAGCAGCAGGAGTTTTTGCGGGTGGGTGGGAGGAGCCGGAATGCACTT
GGCAATGGAGAGAAGACCCCCG
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