mRNA_Ecto-sp13_S_contig15789.4261.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15789.4261.1 vs. uniprot
Match: D7G6T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T4_ECTSI) HSP 1 Score: 437 bits (1124), Expect = 2.250e-146 Identity = 221/230 (96.09%), Postives = 224/230 (97.39%), Query Frame = 1
Query: 1 NSVGGTYVGMGSTSLALQRRRGQANVVAVASNGCSCTGEMELQCQVMGELQKGCIAIVEMPAVDGAPAHRLKVFLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVEQTQDTEGEEGMDPGGPLGDQLYDM*SNARTRGGVLAARRRLLELKDQASAQAKESTALGVVAPARADERWLLYDVMDIVPGRTMPVEILHADALNAQGLEQRFFIGLLSKEGRRLISA 690
NSVGGTYVGMGSTSLALQRRRGQANVVAVASNGCSCTGEMELQCQVMGELQKGCIAIVEMPAVDGAPAHRLKVFLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVEQTQD EGEEG DPGGPLGDQLYD+ SNARTRGG+LAARRRLLELKDQAS QAKESTALGVVAPARADERWLLYDVMDIVPGRTMPVEILHADALNAQGL QRFFIGLL+ EGRRLISA
Sbjct: 466 NSVGGTYVGMGSTSLALQRRRGQANVVAVASNGCSCTGEMELQCQVMGELQKGCIAIVEMPAVDGAPAHRLKVFLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVEQTQDAEGEEGTDPGGPLGDQLYDIESNARTRGGLLAARRRLLELKDQASVQAKESTALGVVAPARADERWLLYDVMDIVPGRTMPVEILHADALNAQGLVQRFFIGLLNTEGRRLISA 695
BLAST of mRNA_Ecto-sp13_S_contig15789.4261.1 vs. uniprot
Match: D7G6M3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M3_ECTSI) HSP 1 Score: 218 bits (556), Expect = 1.440e-66 Identity = 118/202 (58.42%), Postives = 140/202 (69.31%), Query Frame = 1
Query: 118 MELQCQVMGELQKGCIAIVEMPAVDGAPAHRLKVFLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVEQTQDTEGEEGMDPGGPLGDQLYDM*SNARTRGGVLAARRRLLELKDQASAQAKESTALGVVAPARADERWLLYDVMDIVPGRTMPVEILHADALNAQGLEQRFFIGLLSKEGRRLISALFEATRRRQLH 723
M+L C++MG+LQKGC A+V PA DG PA+ +KVFLRGGLLLLVADSPQRALM KHPN +RFPC+YCMVEQTQD EG G LGDQLYD+ +N RTRG +L R +L L Q + S+ALGVVAP D WLL++ DIVP R PVE LHADALNAQ L Q++ I LL+ +GR LISA R L+
Sbjct: 1 MDLFCRLMGDLQKGCTAVVHFPATDGEPAYVVKVFLRGGLLLLVADSPQRALMCYCKHPNSFSRFPCMYCMVEQTQDNEG-------GDLGDQLYDIVANRRTRGLMLEGRSQLEALASNPVQQGQLSSALGVVAPQEGDV-WLLFEACDIVPSRVTPVESLHADALNAQALVQKYLIALLNTKGRELISATMRQRRGNNLY 194
BLAST of mRNA_Ecto-sp13_S_contig15789.4261.1 vs. uniprot
Match: A0A6H5KSU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSU0_9PHAE) HSP 1 Score: 204 bits (519), Expect = 2.220e-56 Identity = 117/230 (50.87%), Postives = 146/230 (63.48%), Query Frame = 1
Query: 1 NSVGGTYVGMGSTSLALQRRRGQANVVAVASNGCSCTGEMELQCQVMGELQKGCIAIVEMPAVDGAPAHRLKVFLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVEQTQDTEGEEGMDPGGPLGDQLYDM*SNARTRGGVLAARRRLLELKDQASAQAKESTALGVVAPARADERWLLYDVMDIVPGRTMPVEILHADALNAQGLEQRFFIGLLSKEGRRLISA 690
++VG TY+G GST+ +LQR+RGQA++ AS G SC GEM+L C++ G+LQKGC A+V PA DG PA+ +KVFLRGGLL+LVADSPQRALM KHPN +R GP+GDQLYD+ +N RTRG +L R +L L Q S+ALGVVAP D W L++ MDIVP R PVE LHADAL L Q++ I L + + R LISA
Sbjct: 342 STVGATYIGFGSTTPSLQRKRGQAHITTCASKGASCEGEMDLFCRLTGDLQKGCTAVVHFPATDGEPAYVVKVFLRGGLLVLVADSPQRALMCYCKHPNSFSRR----------------------GPVGDQLYDIVTNRRTRGLMLEERSKLEALASNPVRQGHLSSALGVVAPQEGDV-WPLFEAMDIVPSRVTPVESLHADAL---ALVQKYLIALQNTKRRELISA 545
BLAST of mRNA_Ecto-sp13_S_contig15789.4261.1 vs. uniprot
Match: A0A6H5KLQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ7_9PHAE) HSP 1 Score: 149 bits (376), Expect = 6.110e-37 Identity = 92/231 (39.83%), Postives = 129/231 (55.84%), Query Frame = 1
Query: 1 NSVGGTYVGMGSTSLALQRRRGQANVVAVASNGCSCTGEMELQCQVMGELQKGCIAIVEMPAVDGAPAHRLKVFLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVEQTQDTEGEEGMDPGGPLGDQLYDM*SNARTRGGVLAARRRLLELKDQASAQAKESTALGVVAPARADERWLLYDVMDIVPGRTMPVEILHADALNAQGLEQRFFIGLLSKEGRRLISAL 693
+S+GG+Y G S A+QR + Q +V +A+ G GE LQC+++G LQ+GC+ + GA + +VF+RGGLLL+ D P R+ K PN ++FPC YCMV D + GG +G+ +D+ + RT G + L L D Q + S LG+VAP + + LY M IVPG +PVE LH DAL L Q F + LLSK+GRRL+SA+
Sbjct: 60 HSIGGSYFDWGWRSQAVQRLKNQTHVGTLATPGARSEGENGLQCEILGLLQQGCLGRRVLRDEQGARSEE-EVFVRGGLLLMCGDGPGRSKCLGTKAPNNFSKFPCSYCMVSHGDD-------ETGGDVGNPQFDIDKHRRTSGRTMDGFSELEALADDPLQQEERSKELGLVAPNASGLKLPLYHAMRIVPGDHVPVERLHFDALGQCQLCQVFCLELLSKKGRRLVSAI 282
BLAST of mRNA_Ecto-sp13_S_contig15789.4261.1 vs. uniprot
Match: A0A6H5KJ80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ80_9PHAE) HSP 1 Score: 122 bits (306), Expect = 2.030e-28 Identity = 83/231 (35.93%), Postives = 116/231 (50.22%), Query Frame = 1
Query: 1 NSVGGTYVGMGSTSLALQRRRGQANVVAVASNGCSCTGEMELQCQVMGELQKGCIAIVEMPAVDGAPAHRLKVFLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVEQTQDTEGEEGMDPGGPLGDQLYDM*SNARTRGGVLAARRRLLELKDQASAQAKESTALGVVAPARADERWLLYDVMDIVPGRTMPVEILHADALNAQGLEQRFFIGLLSKEGRRLISAL 693
+S+GG+Y G G S A+QR + Q +V +A+ GE L C+++G LQ+GC+ + GA + +VF+RGGLLL+ D R+ K PN ++FPC YCM + RT G + L L D Q + S LG+VAP + + LY M IVPG +PVE LH DAL L Q F + LLSK+GRR++SA+
Sbjct: 60 HSIGGSYFGWGWRSQAVQRLKNQTHVGTLATPEARSQGENGLHCEILGLLQQGCLGRRVLRDEQGARSEE-EVFVRGGLLLMCGDGRGRSKCLGTKAPNNCSKFPCSYCM----------------------------HRRTWGRTMDGFSELEALADDPLQQEERSKELGLVAPNASGLKLPLYHAMRIVPGDHVPVERLHFDALGQCQLCQVFCLELLSKKGRRIVSAI 261
BLAST of mRNA_Ecto-sp13_S_contig15789.4261.1 vs. uniprot
Match: A0A6H5J9E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E1_9PHAE) HSP 1 Score: 121 bits (303), Expect = 3.580e-27 Identity = 87/246 (35.37%), Postives = 126/246 (51.22%), Query Frame = 1
Query: 1 NSVGGTYVGMGSTSLALQRRRGQANVVAVASNGCSCTGEMELQCQVMGELQKGCIAIVEMPAVDGAPAHRLKVFLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVEQTQDTEGEEGMDPGGPLGDQLYDM*SNARTRGGVLAARRRLLELKDQASAQAKESTAL-GVV--------------APARADERWLLYDVMDIVPGRTMPVEILHADALNAQGLEQRFFIGLLSKEGRRLISAL 693
+SVGGTY G S A+QR R Q +V +AS G SC GE+ LQC+++G LQ+GC+ + DGA + +VF+RGGLL+ D P RA + K N +RFPC YCMVEQ + G G LG+ YD+ ++ RT G + A L L D + +++S G++ +P+R RW L+ +MP ++ LE +LS +GRRL+SA+
Sbjct: 333 HSVGGTYFGWPWRSQAVQRLRQQTHVGTLASTGASCAGEIGLQCEILGLLQRGCVGECTLKDDDGA-TYNQEVFVRGGLLMWCGDGPGRAKVLGSKACNHFSRFPCPYCMVEQRDNITG-------GDLGNAQYDIDAHRRTWGQITAGFDTLKSLADNPAEHSRQSMVYWGLLRTPTAPPCPCTTQCSPSRP--RWSLWSGCT-----SMPCDLGSCQLCQVSCLE------MLSTQGRRLVSAV 557
BLAST of mRNA_Ecto-sp13_S_contig15789.4261.1 vs. uniprot
Match: A0A6H5KWG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG2_9PHAE) HSP 1 Score: 109 bits (273), Expect = 1.080e-25 Identity = 70/163 (42.94%), Postives = 90/163 (55.21%), Query Frame = 1
Query: 214 KVFLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVEQTQDTEGEEGMDPGGPLGDQLYDM*SNARTRGGVLAARRRLLELKDQASAQAKESTALGVVAPARADERWL---LYDVMDIVPGRTMPVEILHADALNAQGLEQRFFIGLLSKEGRRLISAL 693
K+FLRGG L V+DSPQRA KHPN ST+ PC YC EQ +E + G LG+ YD+ +N RT G R L L + Q K S L +VAP L L+D + P R +PVE LHA AL AQ L Q FF+ L+++ GR +IS++
Sbjct: 6 KIFLRGGPLTWVSDSPQRAKPLYCKHPNNSTKLPCPYCKAEQ------DERLPTCGDLGNARYDVEANRRTWGEAQDGWRELQGLDLAPNEQTKRSAELEIVAPTGVSGGVLGRPLWDKAFVNPARHVPVESLHAYALGAQALVQFFFLALMNEAGRGVISSI 162
BLAST of mRNA_Ecto-sp13_S_contig15789.4261.1 vs. uniprot
Match: A0A6H5JWQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ6_9PHAE) HSP 1 Score: 116 bits (291), Expect = 1.110e-25 Identity = 82/211 (38.86%), Postives = 105/211 (49.76%), Query Frame = 1
Query: 34 STSLALQRRRGQANVVAVASNGCSCTGEMELQCQVMGELQKGCIAIVEMPAVDGAPAHRLKVFLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVEQTQDTEGEEGMDPGGPLGDQLYDM*SNARTRGGVLAARRRLLELKDQASAQAKESTALGVVAPARADERWL---LYDVMDIVPGRTMPVEILHADALNA-QGLEQRFFIG 654
S S+ +QRRR + + +AS G GE+ LQ VMGE +FLRGG L V+DSPQRA++ KHPN ST+ PC YC +Q EE + G LG+ YD+ +N RT G R L L + Q K S LG++AP L L+D + I P R +PVE LHADAL A G+ FF G
Sbjct: 213 SMSIKVQRRRSETLLSTIASPGACVEGEISLQASVMGE-----------------------IFLRGGPLTWVSDSPQRAILLYCKHPNNSTKLPCPYCKADQ------EERLPTCGDLGNARYDVEANRRTWGEAQDGWRELQALDLAPNEQTKRSAELGIMAPTGVSGGVLGRPLWDKVFINPARHVPVESLHADALTAGAGVGAGFFSG 394
BLAST of mRNA_Ecto-sp13_S_contig15789.4261.1 vs. uniprot
Match: A0A6H5K3Q6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q6_9PHAE) HSP 1 Score: 113 bits (283), Expect = 1.060e-24 Identity = 79/199 (39.70%), Postives = 100/199 (50.25%), Query Frame = 1
Query: 1 NSVGGTYVGMGSTSLALQRRRGQANVVAVASNGCSCTGEMELQCQVMGELQK-------GCIAIVEMPAVDGAPAHRLKVFLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVEQTQDTEGEEGMDPGGPLGDQLYDM*SNARTRGGVLAARRRLLELKDQASAQAKESTALGVVAPARADERWLLYDVMDIVP 576
+SVG TY G S A+QR R Q +V +AS G SC GE+ LQC+V+G LQ+ G D P VF+RGGLLL V D P RA + K N +RFPC YCMVEQ + G G LGD YD+ +N RT G + A L L D Q+++S LG+V + +YD M P
Sbjct: 142 HSVGSTYFGWPWRSQAVQRLRRQTHVGTLASTGASCQGEIGLQCEVLGLLQRXDGKTPEGAACFTTSLPSDENPTPM--VFVRGGLLLWVGDGPGRAKVLGSKACNNFSRFPCPYCMVEQRDNITG-------GDLGDAQYDIEANRRTWGQITAGFDTLKSLADNPVEQSRQSMVLGLVTDSNGPSL-PMYDSMLTAP 330
BLAST of mRNA_Ecto-sp13_S_contig15789.4261.1 vs. uniprot
Match: A0A6H5JWC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC0_9PHAE) HSP 1 Score: 113 bits (282), Expect = 1.790e-24 Identity = 67/161 (41.61%), Postives = 88/161 (54.66%), Query Frame = 1
Query: 1 NSVGGTYVGMGSTSLALQRRRGQANVVAVASNGCSCTGEMELQCQVMGELQKGCIAIVEMPAVDGAPAHRLKVFLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVEQTQDTEGEEGMDPGGPLGDQLYDM*SNARTRGGVLAARRRLLELKDQAS 483
+SVGG Y G + A+QR + Q +V +AS G C GE+ LQC+++G LQ+GC+ + DG + +VF+RGGLL+ D P RA K N +RFPC YCMVEQ D G G LGD YD+ +N RT GG+ L L D S
Sbjct: 528 HSVGGGYFGWPWRTQAVQRLKRQTHVGTLASTGACCQGEIGLQCEILGLLQRGCLGECMLTEDDGT-TYLQEVFVRGGLLMWCGDGPGRAKNLGSKACNHFSRFPCPYCMVEQRDDAFG-------GDLGDAQYDLDANRRTWGGITEGFATLQSLSDDPS 680 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15789.4261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15789.4261.1 >prot_Ecto-sp13_S_contig15789.4261.1 ID=prot_Ecto-sp13_S_contig15789.4261.1|Name=mRNA_Ecto-sp13_S_contig15789.4261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp MPSDGRASERVHSYCGNAGGRRRTGSSTQGFLARGAVAAGCGFPTTRSDVback to top mRNA from alignment at Ecto-sp13_S_contig15789:1197..3211+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15789.4261.1 ID=mRNA_Ecto-sp13_S_contig15789.4261.1|Name=mRNA_Ecto-sp13_S_contig15789.4261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2015bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15789:1197..3211+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15789:1197..3211+ >mRNA_Ecto-sp13_S_contig15789.4261.1 ID=mRNA_Ecto-sp13_S_contig15789.4261.1|Name=mRNA_Ecto-sp13_S_contig15789.4261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15789:1197..3211+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |