prot_Ecto-sp13_S_contig15787.4258.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig15787.4258.1
Unique Name	prot_Ecto-sp13_S_contig15787.4258.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	124

Homology

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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: A0A2D4G137_MICCO (PROCN domain-containing protein (Fragment) n=1 Tax=Micrurus corallinus TaxID=54390 RepID=A0A2D4G137_MICCO)

HSP 1 Score: 173 bits (438), Expect = 4.980e-53
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 0

Query:   28 RQTELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 124
            + T+LDWVEVGLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL      C E+LRLTKLVVDSHVQYRLGNVDAFQ
Sbjct:   72 QSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL------CREVLRLTKLVVDSHVQYRLGNVDAFQ 162

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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: A0A7S1CGC0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CGC0_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.320e-52
Identity = 83/95 (87.37%), Postives = 88/95 (92.63%), Query Frame = 0

Query:   30 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 124
            TELDWVE GLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKP+KTLTTKERKKSRFGNAFHLTR      EILRLTKL+VD+HVQYRLGNVDAFQ
Sbjct:   54 TELDWVEAGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPIKTLTTKERKKSRFGNAFHLTR------EILRLTKLIVDTHVQYRLGNVDAFQ 142

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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: A0A4D9CQ16_9STRA (PROCN domain-containing protein (Fragment) n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQ16_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.250e-51
Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = 0

Query:   30 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 124
            TELDWVEVGLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKP KTLTTKERKKSRFGNAFHLTR      EILRLTKL+VDSH+QYRLGNVDAFQ
Sbjct:  102 TELDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTR------EILRLTKLIVDSHIQYRLGNVDAFQ 190

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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: G3IPH0_CRIGR (Pre-mRNA-processing-splicing factor 8 n=2 Tax=Cricetulus griseus TaxID=10029 RepID=G3IPH0_CRIGR)

HSP 1 Score: 173 bits (438), Expect = 4.050e-51
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 0

Query:   28 RQTELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 124
            + T+LDWVEVGLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL      C E+LRLTKLVVDSHVQYRLGNVDAFQ
Sbjct:  136 QSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL------CREVLRLTKLVVDSHVQYRLGNVDAFQ 226

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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: Q1L779_OSMMO (PRP8P (Fragment) n=1 Tax=Osmerus mordax TaxID=8014 RepID=Q1L779_OSMMO)

HSP 1 Score: 171 bits (434), Expect = 4.790e-51
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 0

Query:   28 RQTELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 124
            + T+LDWVEVGLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL      C E+LRL+KLVVDSHVQYRLGNVDAFQ
Sbjct:   37 QSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL------CREVLRLSKLVVDSHVQYRLGNVDAFQ 127

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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: A0A7S2STG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STG6_9STRA)

HSP 1 Score: 172 bits (436), Expect = 5.020e-51
Identity = 85/97 (87.63%), Postives = 89/97 (91.75%), Query Frame = 0

Query:   28 RQTELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 124
            + TELDWVEVGLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR      EILRLTKL+VDS VQYRLGNVDAFQ
Sbjct:  165 QSTELDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR------EILRLTKLIVDSMVQYRLGNVDAFQ 255

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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: A0A6B2G5K7_MYXSQ (Pre-mRNA-processing-splicing factor 8 (Trinotate prediction) (Fragment) n=1 Tax=Myxobolus squamalis TaxID=59785 RepID=A0A6B2G5K7_MYXSQ)

HSP 1 Score: 170 bits (430), Expect = 9.760e-51
Identity = 81/95 (85.26%), Postives = 86/95 (90.53%), Query Frame = 0

Query:   30 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 124
            T LDWVE GLQVCRQGYNMLNLLIHRKSL+YLHLDYNFNLKP+KTLTTKERKKSRFGNAFHL      C E+LRLTKLVVDSHVQYR+GN+DAFQ
Sbjct:   86 TTLDWVEAGLQVCRQGYNMLNLLIHRKSLNYLHLDYNFNLKPIKTLTTKERKKSRFGNAFHL------CREVLRLTKLVVDSHVQYRIGNIDAFQ 174

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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: A0A7S1T384_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T384_9CHLO)

HSP 1 Score: 167 bits (424), Expect = 2.290e-50
Identity = 82/97 (84.54%), Postives = 87/97 (89.69%), Query Frame = 0

Query:   28 RQTELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 124
            + TELDWVE GLQVCRQGYNMLNLLIHRK+L YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL      C EILRLTKLVVDS+VQ+RLGNVDA+Q
Sbjct:   66 QSTELDWVEAGLQVCRQGYNMLNLLIHRKNLDYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL------CREILRLTKLVVDSNVQFRLGNVDAYQ 156

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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: A0A6H5K085_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K085_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 2.580e-50
Identity = 90/97 (92.78%), Postives = 91/97 (93.81%), Query Frame = 0

Query:   28 RQTELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 124
            +QTELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR      EILRLTKLVVDSHVQYRLGNVDAFQ
Sbjct:  590 QQTELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR------EILRLTKLVVDSHVQYRLGNVDAFQ 680

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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: A0A7S0BKD7_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BKD7_9RHOD)

HSP 1 Score: 167 bits (423), Expect = 4.130e-50
Identity = 80/95 (84.21%), Postives = 85/95 (89.47%), Query Frame = 0

Query:   30 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 124
            TE+DWVE GLQVCRQG+NMLNLLIHRK L+YLHLDYNFNLKP+KTLTTKERKKSRFGNAFHL      C EILRLTKL+VD HVQYRLGNVDAFQ
Sbjct:   83 TEIDWVEAGLQVCRQGHNMLNLLIHRKKLNYLHLDYNFNLKPIKTLTTKERKKSRFGNAFHL------CREILRLTKLIVDCHVQYRLGNVDAFQ 171

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2D4G137_MICCO	4.980e-53	86.60	PROCN domain-containing protein (Fragment) n=1 Tax...	[more]
A0A7S1CGC0_9STRA	1.320e-52	87.37	Hypothetical protein (Fragment) n=1 Tax=Bicosoecid...	[more]
A0A4D9CQ16_9STRA	2.250e-51	88.42	PROCN domain-containing protein (Fragment) n=1 Tax...	[more]
G3IPH0_CRIGR	4.050e-51	86.60	Pre-mRNA-processing-splicing factor 8 n=2 Tax=Cric...	[more]
Q1L779_OSMMO	4.790e-51	85.57	PRP8P (Fragment) n=1 Tax=Osmerus mordax TaxID=8014...	[more]
A0A7S2STG6_9STRA	5.020e-51	87.63	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
A0A6B2G5K7_MYXSQ	9.760e-51	85.26	Pre-mRNA-processing-splicing factor 8 (Trinotate p...	[more]
A0A7S1T384_9CHLO	2.290e-50	84.54	Hypothetical protein (Fragment) n=1 Tax=Tetraselmi...	[more]
A0A6H5K085_9PHAE	2.580e-50	92.78	MPN domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A7S0BKD7_9RHOD	4.130e-50	84.21	Hypothetical protein (Fragment) n=1 Tax=Rhodosorus...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012592	PROCN domain	PFAM	PF08083	PROCN	coord: 28..124 e-value: 1.1E-48 score: 165.9
IPR027652	Pre-mRNA-processing-splicing factor 8	PANTHER	PTHR11140	PRE-MRNA SPLICING FACTOR PRP8	coord: 27..124

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig15787	contig	Ecto-sp13_S_contig15787:557..1828 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig15787.4258.1	mRNA_Ecto-sp13_S_contig15787.4258.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig15787 557..1828 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig15787.4258.1 ID=prot_Ecto-sp13_S_contig15787.4258.1|Name=mRNA_Ecto-sp13_S_contig15787.4258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
MEVLKVPRNYILCRKPTTPRFPDPNQRRQTELDWVEVGLQVCRQGYNMLN
LLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVE
ILRLTKLVVDSHVQYRLGNVDAFQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012592	PROCN
IPR027652	PRP8