mRNA_Ecto-sp13_S_contig15787.4258.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15787.4258.1
Unique NamemRNA_Ecto-sp13_S_contig15787.4258.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: A0A2D4G137_MICCO (PROCN domain-containing protein (Fragment) n=1 Tax=Micrurus corallinus TaxID=54390 RepID=A0A2D4G137_MICCO)

HSP 1 Score: 173 bits (438), Expect = 4.980e-53
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 1 
Query:   82 RQTELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 372
            + T+LDWVEVGLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL      C E+LRLTKLVVDSHVQYRLGNVDAFQ
Sbjct:   72 QSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL------CREVLRLTKLVVDSHVQYRLGNVDAFQ 162
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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: A0A7S1CGC0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CGC0_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.320e-52
Identity = 83/95 (87.37%), Postives = 88/95 (92.63%), Query Frame = 1 
Query:   88 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 372
            TELDWVE GLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKP+KTLTTKERKKSRFGNAFHLTR      EILRLTKL+VD+HVQYRLGNVDAFQ
Sbjct:   54 TELDWVEAGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPIKTLTTKERKKSRFGNAFHLTR------EILRLTKLIVDTHVQYRLGNVDAFQ 142
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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: A0A4D9CQ16_9STRA (PROCN domain-containing protein (Fragment) n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQ16_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.250e-51
Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = 1 
Query:   88 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 372
            TELDWVEVGLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKP KTLTTKERKKSRFGNAFHLTR      EILRLTKL+VDSH+QYRLGNVDAFQ
Sbjct:  102 TELDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTR------EILRLTKLIVDSHIQYRLGNVDAFQ 190
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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: G3IPH0_CRIGR (Pre-mRNA-processing-splicing factor 8 n=2 Tax=Cricetulus griseus TaxID=10029 RepID=G3IPH0_CRIGR)

HSP 1 Score: 173 bits (438), Expect = 4.050e-51
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 1 
Query:   82 RQTELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 372
            + T+LDWVEVGLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL      C E+LRLTKLVVDSHVQYRLGNVDAFQ
Sbjct:  136 QSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL------CREVLRLTKLVVDSHVQYRLGNVDAFQ 226
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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: Q1L779_OSMMO (PRP8P (Fragment) n=1 Tax=Osmerus mordax TaxID=8014 RepID=Q1L779_OSMMO)

HSP 1 Score: 171 bits (434), Expect = 4.790e-51
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 1 
Query:   82 RQTELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 372
            + T+LDWVEVGLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL      C E+LRL+KLVVDSHVQYRLGNVDAFQ
Sbjct:   37 QSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL------CREVLRLSKLVVDSHVQYRLGNVDAFQ 127
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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: A0A7S2STG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STG6_9STRA)

HSP 1 Score: 172 bits (436), Expect = 5.020e-51
Identity = 85/97 (87.63%), Postives = 89/97 (91.75%), Query Frame = 1 
Query:   82 RQTELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 372
            + TELDWVEVGLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR      EILRLTKL+VDS VQYRLGNVDAFQ
Sbjct:  165 QSTELDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR------EILRLTKLIVDSMVQYRLGNVDAFQ 255
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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: A0A6B2G5K7_MYXSQ (Pre-mRNA-processing-splicing factor 8 (Trinotate prediction) (Fragment) n=1 Tax=Myxobolus squamalis TaxID=59785 RepID=A0A6B2G5K7_MYXSQ)

HSP 1 Score: 170 bits (430), Expect = 9.760e-51
Identity = 81/95 (85.26%), Postives = 86/95 (90.53%), Query Frame = 1 
Query:   88 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 372
            T LDWVE GLQVCRQGYNMLNLLIHRKSL+YLHLDYNFNLKP+KTLTTKERKKSRFGNAFHL      C E+LRLTKLVVDSHVQYR+GN+DAFQ
Sbjct:   86 TTLDWVEAGLQVCRQGYNMLNLLIHRKSLNYLHLDYNFNLKPIKTLTTKERKKSRFGNAFHL------CREVLRLTKLVVDSHVQYRIGNIDAFQ 174
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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: A0A7S1T384_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T384_9CHLO)

HSP 1 Score: 167 bits (424), Expect = 2.290e-50
Identity = 82/97 (84.54%), Postives = 87/97 (89.69%), Query Frame = 1 
Query:   82 RQTELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 372
            + TELDWVE GLQVCRQGYNMLNLLIHRK+L YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL      C EILRLTKLVVDS+VQ+RLGNVDA+Q
Sbjct:   66 QSTELDWVEAGLQVCRQGYNMLNLLIHRKNLDYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL------CREILRLTKLVVDSNVQFRLGNVDAYQ 156
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BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: A0A6H5K085_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K085_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 2.580e-50
Identity = 90/97 (92.78%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:   82 RQTELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 372
            +QTELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR      EILRLTKLVVDSHVQYRLGNVDAFQ
Sbjct:  590 QQTELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR------EILRLTKLVVDSHVQYRLGNVDAFQ 680
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Match: A0A7S0BKD7_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BKD7_9RHOD)

HSP 1 Score: 167 bits (423), Expect = 4.130e-50
Identity = 80/95 (84.21%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:   88 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVEILRLTKLVVDSHVQYRLGNVDAFQ 372
            TE+DWVE GLQVCRQG+NMLNLLIHRK L+YLHLDYNFNLKP+KTLTTKERKKSRFGNAFHL      C EILRLTKL+VD HVQYRLGNVDAFQ
Sbjct:   83 TEIDWVEAGLQVCRQGHNMLNLLIHRKKLNYLHLDYNFNLKPIKTLTTKERKKSRFGNAFHL------CREILRLTKLIVDCHVQYRLGNVDAFQ 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15787.4258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4G137_MICCO4.980e-5386.60PROCN domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S1CGC0_9STRA1.320e-5287.37Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A4D9CQ16_9STRA2.250e-5188.42PROCN domain-containing protein (Fragment) n=1 Tax... [more]
G3IPH0_CRIGR4.050e-5186.60Pre-mRNA-processing-splicing factor 8 n=2 Tax=Cric... [more]
Q1L779_OSMMO4.790e-5185.57PRP8P (Fragment) n=1 Tax=Osmerus mordax TaxID=8014... [more]
A0A7S2STG6_9STRA5.020e-5187.63Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6B2G5K7_MYXSQ9.760e-5185.26Pre-mRNA-processing-splicing factor 8 (Trinotate p... [more]
A0A7S1T384_9CHLO2.290e-5084.54Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A6H5K085_9PHAE2.580e-5092.78MPN domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S0BKD7_9RHOD4.130e-5084.21Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15787contigEcto-sp13_S_contig15787:557..1828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeApicomplexa
Stop0
Start1
Seed ortholog score174.1
Seed ortholog evalue4.1e-41
Seed eggNOG ortholog5874.XP_954981.1
Model size372
KEGG koko:K12856
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.U5 snRNA binding
EggNOG OGs3KAAJ@422676,3Y9PV@5794,3Z4XQ@5863,COG5178@1,KOG1795@2759
Cds size372
COG Functional cat.A
Best tax levelPiroplasmida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462834.4438968-CDS-Ecto-sp13_S_contig15787:556..8521681462834.4438968-CDS-Ecto-sp13_S_contig15787:556..852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15787 557..852 +
1681462834.455007-CDS-Ecto-sp13_S_contig15787:1752..18281681462834.455007-CDS-Ecto-sp13_S_contig15787:1752..1828Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15787 1753..1828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15787.4258.1prot_Ecto-sp13_S_contig15787.4258.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15787 557..1828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15787.4258.1

>prot_Ecto-sp13_S_contig15787.4258.1 ID=prot_Ecto-sp13_S_contig15787.4258.1|Name=mRNA_Ecto-sp13_S_contig15787.4258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
MEVLKVPRNYILCRKPTTPRFPDPNQRRQTELDWVEVGLQVCRQGYNMLN
LLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTRCVRVCVE
ILRLTKLVVDSHVQYRLGNVDAFQ
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mRNA from alignment at Ecto-sp13_S_contig15787:557..1828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15787.4258.1 ID=mRNA_Ecto-sp13_S_contig15787.4258.1|Name=mRNA_Ecto-sp13_S_contig15787.4258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1272bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15787:557..1828+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGTCTTAAAAGTGCCACGTAATTATATACTCTGTCGAAAACCAAC
AACCCCCCGCTTTCCGGATCCGAACCAACGGCGGCAGACGGAGCTGGACT
GGGTGGAAGTCGGGCTTCAGGTGTGCCGTCAGGGGTACAACATGCTCAAC
CTCCTCATCCACCGGAAGAGCTTGAGCTACCTCCACCTGGACTACAACTT
CAACTTGAAGCCGGTCAAGACGCTCACGACCAAGGAGCGCAAGAAGTCCC
GCTTCGGAAACGCCTTCCACCTCACGAGGTGTGTGCGTGTTTGTGTGTTT
TTGGATTATGATAGCAACGAACACGCTTTTTAGCCGGCTGACCAATGAAA
AGCCGTCGGTCTCGTTGTAGGGGGGTAACAATCGCGAACACGCTTTGTTA
TCGATGGACACTGCAGTTGCAAGACAGGCGTTCACTGTGTGTGTGTGTTT
TTGGATTAGTATCGATCGCGCTAGTCAACTGGCCAATGAAAAGCAGCCGG
TCTGTGTAGCGGGGTAACAATCACGAACTTGCTTTCGAATCAAAACGCTT
TGCAGCAGGATAAAAAGCGAACACGGCTTCTAGTTCGAAGGGGTCTACCG
ATTGTGTGTTTAGACCCGGTTGTAGAGGGATGACAAAGGATGGATGCCGT
AGCAAAAGGCCAGGCGTTTGCTGTATGTGTGGGTGCGTTTTGAAGTGGCA
CCGACCGCGCAAACCGGCTGACCAATGAAAAGCCGTTAGTCTTGTGGCGG
CCGTGATCGTGTTGTGTGTGTGCTCATTTATTTGCGGTCGACCGCACCAA
CCAGCTAAACGATGACGAGACGTCAGCCGGACCAAGTGTGTCACTTCCCG
ATCCCCTTCCCCCCCCCGTGTCCTACTGGGACATATGAAGTGGGTTGAAA
GGGCGGGAAATTATATCAAAAGGATAGATGGGCTAGGGAAAACATTTTTG
AGATACATTTGTCATAGTATTAAGAAACAATTGGCCATCGGTGATTGGTC
CTGTGGGAACAATGCGTCGTCCTCTAGAGGACGCGTCGTCAATGGTCTAA
CCGCAAAGGTATGTAAAACATTTAGAGTACGCCCCGCCGGTGTTCTCATT
GTGCCCTCGCCTCCTCTTTCACCCCGCTTCCCTTTACCCCTGACTCTTCC
TTGCCCATCCCCCCCCCCCCCCCCCCCCAAAAAAAACATATGCTAGGGAA
ATCCTTCGTCTGACGAAGCTGGTGGTGGACTCCCACGTCCAGTACCGCCT
GGGCAACGTCGACGCCTTCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15787:557..1828+

>mRNA_Ecto-sp13_S_contig15787.4258.1 ID=mRNA_Ecto-sp13_S_contig15787.4258.1|Name=mRNA_Ecto-sp13_S_contig15787.4258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15787:557..1828+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGTCTTAAAAGTGCCACGTAATTATATACTCTGTCGAAAACCAAC
AACCCCCCGCTTTCCGGATCCGAACCAACGGCGGCAGACGGAGCTGGACT
GGGTGGAAGTCGGGCTTCAGGTGTGCCGTCAGGGGTACAACATGCTCAAC
CTCCTCATCCACCGGAAGAGCTTGAGCTACCTCCACCTGGACTACAACTT
CAACTTGAAGCCGGTCAAGACGCTCACGACCAAGGAGCGCAAGAAGTCCC
GCTTCGGAAACGCCTTCCACCTCACGAGGTGTGTGCGTGTTTGTGTGGAA
ATCCTTCGTCTGACGAAGCTGGTGGTGGACTCCCACGTCCAGTACCGCCT
GGGCAACGTCGACGCCTTCCAG
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