mRNA_Ecto-sp13_S_contig15786.4257.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15786.4257.1
Unique NamemRNA_Ecto-sp13_S_contig15786.4257.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15786.4257.1 vs. uniprot
Match: D7FKM0_ECTSI (HECT-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM0_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 1.620e-60
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 1 
Query:    1 LKGRIQVTFMNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFIATQDQYLFPNPAASMVADDYLFHFEFLGRVLAKAVFEDILVEPQFSPVFLNKLLGR 306
            LKGRIQVTFMNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALF+ATQDQYLFPNPAASMVADDYLFHFEFLGRVLAKAVFEDILVEPQFSPVFLNKLLGR
Sbjct: 1058 LKGRIQVTFMNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFVATQDQYLFPNPAASMVADDYLFHFEFLGRVLAKAVFEDILVEPQFSPVFLNKLLGR 1159
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BLAST of mRNA_Ecto-sp13_S_contig15786.4257.1 vs. uniprot
Match: K8YUL2_NANGC (HECT-type E3 ubiquitin transferase (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUL2_NANGC)

HSP 1 Score: 138 bits (348), Expect = 6.800e-40
Identity = 67/105 (63.81%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:    1 LKGRIQVTFMNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFIATQDQYLFPNPAASM-VADDYLFHFEFLGRVLAKAVFEDILVEPQFSPVFLNKLLGRVS 312
            L+GR+QVTF++  G EEAGIDGGGVFKE+MD LTKRAFDPQYALF  T D  L+PNP + + V  D+L HF FLG+VLAKA++E ILVEPQF+  FL +L G+++
Sbjct:   12 LRGRVQVTFVSDLGTEEAGIDGGGVFKEFMDALTKRAFDPQYALFRVTPDHLLYPNPLSGLAVGPDHLQHFAFLGKVLAKALYESILVEPQFAIFFLQRLGGKLN 116
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BLAST of mRNA_Ecto-sp13_S_contig15786.4257.1 vs. uniprot
Match: A0A7S2CNC5_9STRA (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CNC5_9STRA)

HSP 1 Score: 138 bits (347), Expect = 5.200e-39
Identity = 63/104 (60.58%), Postives = 83/104 (79.81%), Query Frame = 1 
Query:    1 LKGRIQVTFMNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFIATQDQYLFPNPAASMVADDYLFHFEFLGRVLAKAVFEDILVEPQFSPVFLNKLLGRVS 312
            LK RI+VTF ++ G +EAGIDGGG+FK++MD L +RAFDPQY LF  T +Q L+PNPA+  +A+D+L HF F+GRVL KA+F+ ILV P F+  FLNKLLGR++
Sbjct:   50 LKHRIRVTFESELGYQEAGIDGGGLFKDFMDALAERAFDPQYGLFNVTSEQLLYPNPASPTLAEDHLAHFAFMGRVLGKAIFDKILVRPAFASFFLNKLLGRIN 153
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BLAST of mRNA_Ecto-sp13_S_contig15786.4257.1 vs. uniprot
Match: A0A662XUZ5_9STRA (HECT-type E3 ubiquitin transferase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUZ5_9STRA)

HSP 1 Score: 145 bits (365), Expect = 3.810e-38
Identity = 70/105 (66.67%), Postives = 86/105 (81.90%), Query Frame = 1 
Query:    1 LKGRIQVTFMNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFIATQDQYLFPNPAASMVAD---DYLFHFEFLGRVLAKAVFEDILVEPQFSPVFLNKLLGR 306
            LK RI+VTF+N+ G+EEAGIDGGGVFKEY+D LTK AF P+Y  F+AT +Q L+PNPAA ++AD   + L  F FLGRVLAKAV+E+ILVEPQF+  FLNKLLG+
Sbjct:  822 LKSRIKVTFINEQGLEEAGIDGGGVFKEYVDNLTKHAFSPEYGFFLATDEQLLYPNPAARLIADTRKEVLDRFRFLGRVLAKAVYENILVEPQFAAFFLNKLLGK 926
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BLAST of mRNA_Ecto-sp13_S_contig15786.4257.1 vs. uniprot
Match: A0A024UCD8_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UCD8_9STRA)

HSP 1 Score: 142 bits (357), Expect = 4.490e-37
Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 1 
Query:    1 LKGRIQVTFMNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFIATQDQYLFPNPAASMVADDYLFHFEFLGRVLAKAVFEDILVEPQFSPVFLNKLLGR 306
            LKGR+Q+TF+N+ G+EEAG+DGGGVFKEY+D LTK AF  ++  F AT D+ L+PNP A +V+DD + HF FLGRVLAKAV+E+IL+EPQF+  FL KLLG 
Sbjct:  597 LKGRMQITFINEQGLEEAGVDGGGVFKEYIDTLTKTAFSTEFPYFRATDDRLLYPNPLAHVVSDDAVAHFRFLGRVLAKAVYEEILIEPQFALFFLKKLLGH 698
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BLAST of mRNA_Ecto-sp13_S_contig15786.4257.1 vs. uniprot
Match: A0A6A4BJM0_9STRA (HECT-type E3 ubiquitin transferase n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A4BJM0_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.160e-36
Identity = 68/105 (64.76%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:    1 LKGRIQVTFMNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFIATQDQYLFPNPAASMVAD---DYLFHFEFLGRVLAKAVFEDILVEPQFSPVFLNKLLGR 306
            LK RI+VTF+N+ G+EEAGIDGGGVFKEYMD LTK AF P+Y  F+AT +Q L+PNP A  + D   + L  + FLGRVLAKAV+E+ILVEPQF+  FLNKLLG+
Sbjct:  815 LKSRIKVTFINEQGLEEAGIDGGGVFKEYMDNLTKNAFSPEYGFFLATDEQLLYPNPGARYIVDTRKEALDRYRFLGRVLAKAVYENILVEPQFAAFFLNKLLGK 919
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BLAST of mRNA_Ecto-sp13_S_contig15786.4257.1 vs. uniprot
Match: A0A3F2RBK9_9STRA (HECT-type E3 ubiquitin transferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RBK9_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.880e-36
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:    1 LKGRIQVTFMNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFIATQDQYLFPNPAASMVAD---DYLFHFEFLGRVLAKAVFEDILVEPQFSPVFLNKLLGR 306
            LK RI+VTF+N+ G+EEAGIDGGGVFKEY+D LTK AF P+Y  F+AT DQ L+PNP A  + D   + L  + FLGRVL KAV+E+ILVEPQF+  FLNKLLG+
Sbjct:  561 LKSRIKVTFINEQGLEEAGIDGGGVFKEYVDTLTKSAFSPEYGFFLATDDQLLYPNPGARYIVDTRKEALDRYRFLGRVLGKAVYENILVEPQFAAFFLNKLLGK 665
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BLAST of mRNA_Ecto-sp13_S_contig15786.4257.1 vs. uniprot
Match: W7TQY7_9STRA (HECT-type E3 ubiquitin transferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQY7_9STRA)

HSP 1 Score: 138 bits (348), Expect = 7.500e-36
Identity = 67/105 (63.81%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:    1 LKGRIQVTFMNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFIATQDQYLFPNPAASM-VADDYLFHFEFLGRVLAKAVFEDILVEPQFSPVFLNKLLGRVS 312
            L+GR+QVTF++  G EEAGIDGGGVFKE+MD LTKRAFDPQYALF  T D  L+PNP + + V  D+L HF FLG+VLAKA++E ILVEPQF+  FL +L G+++
Sbjct:  939 LRGRVQVTFVSDLGTEEAGIDGGGVFKEFMDALTKRAFDPQYALFRVTPDHLLYPNPLSGLAVGPDHLQHFAFLGKVLAKALYESILVEPQFAIFFLQRLGGKLN 1043
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BLAST of mRNA_Ecto-sp13_S_contig15786.4257.1 vs. uniprot
Match: A0A6G0XCA9_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCA9_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.000e-35
Identity = 60/102 (58.82%), Postives = 84/102 (82.35%), Query Frame = 1 
Query:    1 LKGRIQVTFMNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFIATQDQYLFPNPAASMVADDYLFHFEFLGRVLAKAVFEDILVEPQFSPVFLNKLLGR 306
            LKGR+Q+TF+N+ G++EAG+DGGG+FKEYMD LTK AF  ++  F+AT++  L+PNP A +++DD   HF FLGRVLAKA++E+IL+EPQF+  FL K+LG+
Sbjct:  570 LKGRMQITFINEQGLDEAGVDGGGMFKEYMDTLTKTAFSTEFPCFLATEEGLLYPNPQAHLISDDAQEHFRFLGRVLAKALYEEILIEPQFALFFLQKMLGQ 671
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BLAST of mRNA_Ecto-sp13_S_contig15786.4257.1 vs. uniprot
Match: A0A397BQ14_9STRA (HECT-type E3 ubiquitin transferase n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BQ14_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.990e-35
Identity = 61/102 (59.80%), Postives = 82/102 (80.39%), Query Frame = 1 
Query:    1 LKGRIQVTFMNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFIATQDQYLFPNPAASMVADDYLFHFEFLGRVLAKAVFEDILVEPQFSPVFLNKLLGR 306
            LKGR+Q+TF+N  G+EEAG+DGGGVFKEY+D LTK AF  ++  F+AT D  L+PNP A + +DD + +F FLGR+LAKA++E+IL+EPQF+  FL KLLG+
Sbjct:  434 LKGRLQITFVNAQGLEEAGVDGGGVFKEYIDTLTKTAFSTEFPYFLATDDHQLYPNPQAHLSSDDAVAYFRFLGRLLAKAMYEEILIEPQFALFFLKKLLGQ 535
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15786.4257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKM0_ECTSI1.620e-6099.02HECT-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
K8YUL2_NANGC6.800e-4063.81HECT-type E3 ubiquitin transferase (Fragment) n=2 ... [more]
A0A7S2CNC5_9STRA5.200e-3960.58HECT-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A662XUZ5_9STRA3.810e-3866.67HECT-type E3 ubiquitin transferase n=2 Tax=Nothoph... [more]
A0A024UCD8_9STRA4.490e-3763.73HECT-type E3 ubiquitin transferase n=1 Tax=Aphanom... [more]
A0A6A4BJM0_9STRA1.160e-3664.76HECT-type E3 ubiquitin transferase n=5 Tax=Phytoph... [more]
A0A3F2RBK9_9STRA2.880e-3663.81HECT-type E3 ubiquitin transferase n=3 Tax=Phytoph... [more]
W7TQY7_9STRA7.500e-3663.81HECT-type E3 ubiquitin transferase n=3 Tax=Monodop... [more]
A0A6G0XCA9_9STRA1.000e-3558.82HECT-type E3 ubiquitin transferase n=1 Tax=Aphanom... [more]
A0A397BQ14_9STRA1.990e-3559.80HECT-type E3 ubiquitin transferase n=5 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15786contigEcto-sp13_S_contig15786:155..993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score191.4
Seed ortholog evalue1.9e-46
Seed eggNOG ortholog2880.D7FKM0
Model size312
KEGG koko:K10589
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
Exons2
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0942@2759
EC2.3.2.26
Cds size285
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462834.3909538-CDS-Ecto-sp13_S_contig15786:154..3131681462834.3909538-CDS-Ecto-sp13_S_contig15786:154..313Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15786 155..313 -
1681462834.4011729-CDS-Ecto-sp13_S_contig15786:840..9661681462834.4011729-CDS-Ecto-sp13_S_contig15786:840..966Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15786 841..966 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462834.409798-UTR-Ecto-sp13_S_contig15786:966..9931681462834.409798-UTR-Ecto-sp13_S_contig15786:966..993Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15786 967..993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15786.4257.1prot_Ecto-sp13_S_contig15786.4257.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15786 155..966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15786.4257.1

>prot_Ecto-sp13_S_contig15786.4257.1 ID=prot_Ecto-sp13_S_contig15786.4257.1|Name=mRNA_Ecto-sp13_S_contig15786.4257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
MNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFIATQDQYLFPNPAA
SMVADDYLFHFEFLGRVLAKAVFEDILVEPQFSPVFLNKLLGRVS
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mRNA from alignment at Ecto-sp13_S_contig15786:155..993-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15786.4257.1 ID=mRNA_Ecto-sp13_S_contig15786.4257.1|Name=mRNA_Ecto-sp13_S_contig15786.4257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=839bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15786:155..993- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGAAGGGAAGGATCCAAGTGACGTTCATGAACCAGCACGGCGTTGAGGA
GGCCGGCATCGACGGAGGGGGCGTTTTCAAGGAGTACATGGACCTGCTCA
CAAAGAGGGCGTTCGACCCGCAGTACGCCCTCTTTATCGCAACACAGGAC
CAGGTTTGTGCGGCGGGGGGTTCTATGATAGTTTGTCGTTTGCGGAGAAT
CTACGGCGGCGCTATTTGGCTGACCATTGAGAAGACGTTGTAAGTCTTGT
CGAAGAGCGTACGGCACAACCAAGCTTCTTGTCTGCAGAACCGGGTATCC
TTACGGCCTTCTGTAAAAGTTAACATCGATCGGGACGGCCGACTAGCCAA
TCAGAATGGAATGCGCGAGTCATGAACGGGATTTTGGAACATCACTACGG
TTCTTTGTGTGTGCGTTGTACAGCGAGTGTAGCAATGTTCTCGTGGTGTA
CGTGGTCGGTCTGGATACACGTTTCGCTGTTGATTATCTTGTAGCGCTCA
AAGCTATGGTGCTATAAACACGCGGGGTTTCTCTTGTCAACGGTTGCCTG
CTGTTTGGGTATGCACTCGGTTGTTTTTTGAATTAGCACCTGATTGTGAG
AATTCCCCTCGTCCCTGTCGCGCAGTGCTGCTCCGTTCTTCTTCATACCA
TGTCTCGTTGCCCCCGTTGCCGCCCGACAGTACCTGTTCCCGAACCCCGC
TGCGTCGATGGTGGCGGACGACTACTTGTTCCACTTCGAGTTCCTGGGCC
GAGTCCTTGCAAAGGCGGTGTTCGAGGACATCCTGGTGGAGCCGCAGTTC
AGCCCGGTGTTCCTGAACAAGCTTCTGGGGAGGGTGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15786:155..993-

>mRNA_Ecto-sp13_S_contig15786.4257.1 ID=mRNA_Ecto-sp13_S_contig15786.4257.1|Name=mRNA_Ecto-sp13_S_contig15786.4257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15786:155..993- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCAGCACGGCGTTGAGGAGGCCGGCATCGACGGAGGGGGCGTTTT
CAAGGAGTACATGGACCTGCTCACAAAGAGGGCGTTCGACCCGCAGTACG
CCCTCTTTATCGCAACACAGGACCAGTACCTGTTCCCGAACCCCGCTGCG
TCGATGGTGGCGGACGACTACTTGTTCCACTTCGAGTTCCTGGGCCGAGT
CCTTGCAAAGGCGGTGTTCGAGGACATCCTGGTGGAGCCGCAGTTCAGCC
CGGTGTTCCTGAACAAGCTTCTGGGGAGGGTGAGC
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