mRNA_Ecto-sp13_S_contig15783.4255.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15783.4255.1
Unique NamemRNA_Ecto-sp13_S_contig15783.4255.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15783.4255.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI)

HSP 1 Score: 815 bits (2105), Expect = 7.790e-297
Identity = 384/418 (91.87%), Postives = 394/418 (94.26%), Query Frame = 1
Query:    1 MYKSYLSMCAGPLLLAFAVKAADYNAPAPTPSPTYARPVSRYSGPTPTYGSESSDSL---DANAGPNDDYTSPATTPSPTTEIYPDLSESYDAEVTPEPVMDTPXXXPDMETTSGPTEYYIETTEDGDMEKMPTSDSGPKEEQDKEEEPLPMENPEDGMSCSTYDEDVDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADDADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYRLDEPKGEMEYNLVRECDNEDVPDYDFRTCSHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFG 1245
            M KS+LSMCAGPLL A AV AADYN PAPTPSPTY+RPVSRYSGPTPTY  +SSDS    DANAGPNDDYTSPAT   PTTEIYPDL+ESY+AEVTPEPVMDTP   PDMETTSGPTEYY+ETTEDGDMEK+PTSD G KEE     EP+PMENPEDGMSCSTYDEDVDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADDADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKY+LDEPKGEMEYNLVRECDNEDVPDYDFRTC+HNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFG
Sbjct:    1 MNKSFLSMCAGPLLFALAVNAADYNEPAPTPSPTYSRPVSRYSGPTPTYWPDSSDSXXXXDANAGPNDDYTSPATXXXPTTEIYPDLNESYEAEVTPEPVMDTPAPSPDMETTSGPTEYYVETTEDGDMEKVPTSDGGSKEEXXXXXEPIPMENPEDGMSCSTYDEDVDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADDADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEPKGEMEYNLVRECDNEDVPDYDFRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFG 418          
BLAST of mRNA_Ecto-sp13_S_contig15783.4255.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI)

HSP 1 Score: 704 bits (1818), Expect = 5.230e-249
Identity = 337/415 (81.20%), Postives = 346/415 (83.37%), Query Frame = 1
Query:    1 MYKSYLSMCAGPLLLAFAVKAADYNAPAPTPSPTYARPVSRYSGPTPTYGSESSDSLDANAGPNDDYTSPATTPSPTTEIYPDLSESYDAEVTPEPVMDTPXXXPDMETTSGPTEYYIETTEDGDMEKMPTSDSGPKEEQDKEEEPLPMENPEDGMSCSTYDEDVDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADDADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYRLDEPKGEMEYNLVRECDNEDVPDYDFRTCSHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFG 1245
            M KS LSMCAGPLLLA A K                                        AGPNDDY SPATTPSPTTEIYPDL E Y+AEVTPEPV+DTP   PDMETTSGPTEYY+ETTEDGDMEKMP SD G ++       P+PMENPEDGMSCSTYDEDVDVA ILPETCEWNTYMCCWTGHDGS GMYGN DVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWAD ADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACS+FG EGIEPC  NSLRS YK RLDEPKGE+EYNLVRECDNEDVPDYDFRTC+HNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFG
Sbjct:    1 MNKSVLSMCAGPLLLALAAK----------------------------------------AGPNDDYNSPATTPSPTTEIYPDLGEYYEAEVTPEPVVDTPAPSPDMETTSGPTEYYVETTEDGDMEKMPMSDGGSEKXXXXXXXPIPMENPEDGMSCSTYDEDVDVANILPETCEWNTYMCCWTGHDGSGGMYGNTDVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADGADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSRFGREGIEPCGANSLRSHYKNRLDEPKGELEYNLVRECDNEDVPDYDFRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFG 375          
BLAST of mRNA_Ecto-sp13_S_contig15783.4255.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI)

HSP 1 Score: 484 bits (1247), Expect = 1.410e-166
Identity = 216/302 (71.52%), Postives = 250/302 (82.78%), Query Frame = 1
Query:  340 TEYYIETTEDGDMEKMPTSDSGPKEEQDKEEEPLPMENPEDGMSCSTYDEDVDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADDADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYRLDEPKGEMEYNLVRECDNEDVPDYDFRTCSHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFG 1245
            T+YY+E T+ G  E+  T  SG   +   EEE  PMENP+DG SCSTYDEDV+VA +L  TCEW+TYMCCWTG DG+ GM  N+DVCRVLDYPEEGD  E+PRD EG VYCHGFAW + AD+D+HILPLYHYV NV RT++GG+YGNVEG P CGCIE+MP VS + CS++  EGI  C +N L SQY+ RL EP G M+ NLVR CDNEDVPDYD+ +CSHNTYMCCWTENDG+GMADNTDVCRV+DYPSMGET E+PG+SEGEVHCHGFVWPEDATDKYIHLL+QFVQ+FDHRDRRGY+G
Sbjct:  107 TDYYVEATDGG--EETITMGSGT--DDGGEEEGAPMENPDDGASCSTYDEDVEVAKLLDSTCEWDTYMCCWTGSDGADGMTANSDVCRVLDYPEEGDSFEMPRDSEGSVYCHGFAWVEGADVDTHILPLYHYVKNVGRTEEGGFYGNVEGAPECGCIEEMPQVSYSECSRYSWEGIVGCGNNGLLSQYRGRLGEPYGPMDDNLVRTCDNEDVPDYDYGSCSHNTYMCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDATDKYIHLLSQFVQNFDHRDRRGYYG 404          
BLAST of mRNA_Ecto-sp13_S_contig15783.4255.1 vs. uniprot
Match: A0A6H5JT81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT81_9PHAE)

HSP 1 Score: 476 bits (1226), Expect = 1.700e-166
Identity = 210/215 (97.67%), Postives = 213/215 (99.07%), Query Frame = 1
Query:  493 VDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADDADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYRLDEPKGEMEYNLVRECDNEDVPDYDFRTCSHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEV 1137
            VDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVL+YPEEGDVLELPRDDEGPVYCHGFAWAD ADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKY+LDEPKGEMEYNLVRECDNEDVPDYDFRTC+HNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPG SEGEV
Sbjct:    4 VDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLNYPEEGDVLELPRDDEGPVYCHGFAWADGADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEPKGEMEYNLVRECDNEDVPDYDFRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGGSEGEV 218          
BLAST of mRNA_Ecto-sp13_S_contig15783.4255.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI)

HSP 1 Score: 454 bits (1169), Expect = 1.540e-155
Identity = 230/416 (55.29%), Postives = 274/416 (65.87%), Query Frame = 1
Query:    1 MYKSYLSMCAGPLLLAFAVKAAD-YNAPAPTPSPTYARPVSRYSGPTPTYGSESSDSLDANAGPNDDYTSPATTPSPTTEIYPDLSESYDAEVTPEPVMDTPXXXPDMETTSGPTEYYIETTEDGDMEKMPTSDSGPKEEQDKEEEPLPMENPEDGMSCSTYDEDVDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADDADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYRLDEPKGEMEYNLVRECDNEDVPDYDFRTCSHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFG 1245
            M+ S+LS+CAGPLLLA A  A D  +APAPTP          YSG             D++ G      SPAT+P+ T   + D S+ Y   V PEP                       T +DG++E               +EE +P+EN  DG  CSTYDEDV VA +LPE CEWNTYMCCWTG+DG  GM  N DVCRV DYPEEG+ LE PRD EG VYCHGF WAD AD++++ILPLYH V N  RT++GGYYGNVEG P CGC+E+MPVVS + CS+F G+GI  C ++ L S Y  R+DEP G +E NLVR CDN DVPD+DFR C  +TYMCCWTEND +G+ DNTDVCR+ DYPS GET EYPG+SEG+VHCHG VWPEDATDKYIHLLAQ+VQ FDH   +GY+G
Sbjct:    1 MHTSFLSVCAGPLLLALAANACDDSSAPAPTPE---------YSG-------------DSSKGTTPSPVSPATSPTDTVVAFAD-SDDY---VEPEP-----------------------TDDDGEVE---------------DEEGVPLENDGDGEVCSTYDEDVHVAYLLPEMCEWNTYMCCWTGNDGPDGMTSNTDVCRVWDYPEEGNSLEFPRDSEGSVYCHGFGWADGADVNTNILPLYHSVINTGRTEEGGYYGNVEGAPQCGCLEEMPVVSFSECSRFDGDGITDCGEHGLYSNYVSRIDEPNGPLEDNLVRICDNYDVPDFDFRECDSHTYMCCWTENDAKGVLDNTDVCRIHDYPSAGETLEYPGDSEGDVHCHGIVWPEDATDKYIHLLAQYVQTFDHIGNKGYYG 352          
BLAST of mRNA_Ecto-sp13_S_contig15783.4255.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE)

HSP 1 Score: 400 bits (1028), Expect = 8.150e-134
Identity = 185/314 (58.92%), Postives = 219/314 (69.75%), Query Frame = 1
Query:  442 PMENPEDGMSCSTYDEDVDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADDADIDSHILPLYHYVTNVNRTDDGGYY-----GNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYRLDEPKGEMEYNLVRECDNEDVPDYDFRTCSHNTYMCCWTENDGQGMADNT----------------------------------------DVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFGK 1248
            PMENP+DG SCSTY+E V+VA +L  TCEW+ YMCCWTG+DG+ GM  N+DVCRVLDYPEEGD  E+PR+ EG V CHGFAWA+ AD+D+HILPLYHYV NV RT++ G+Y      +VEG P CGCIE++P VS + CS++  EGI  C +N L SQY+  L EP G M+ NLVR CDNED+PDYD  +CSHNTYMCC TENDGQGMA+NT                                        DVCRV+DYPS+G   E+ G+SE E H HGFVW EDATDKYIHLL+QFVQ FDHRDRRGY+GK
Sbjct:   19 PMENPDDGASCSTYEEHVEVAKLLDSTCEWDPYMCCWTGNDGADGMTANSDVCRVLDYPEEGDSFEMPRESEGFVCCHGFAWAEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIPSVSCSECSRYSWEGIAGCGNNGLLSQYRGCLGEPCGPMDDNLVRTCDNEDIPDYDHGSCSHNTYMCCLTENDGQGMAENTVRRRVPAVASCVEFSCYSADRKDVGLTMLSVILGHLGATKDVCRVLDYPSVGGALEFAGDSEREAHRHGFVWTEDATDKYIHLLSQFVQKFDHRDRRGYYGK 332          
BLAST of mRNA_Ecto-sp13_S_contig15783.4255.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 8.720e-75
Identity = 109/177 (61.58%), Postives = 131/177 (74.01%), Query Frame = 1
Query:  439 LPMENPEDGMSCSTYDEDVDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADDADIDSHILPLYHYVTNVNRTDD-GGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYRLDEPKGEMEYNLVRECDN 966
            L + +  DG SCSTYDED++VA +L  TCEW+TYMCC+T HD  +G+  N DVC V   P EG  LE+P D EGPVYCHGFAW + AD+++HILPLYHYV N+ RT++ GGYYGNVEG P CGCIE+MP VS A CS+F  +GI  C +  L SQY  RLD P GEME+NLVR CDN
Sbjct:   10 LAVSSASDGGSCSTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSV---PSEG--LEMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLDAPYGEMEHNLVRSCDN 181          
BLAST of mRNA_Ecto-sp13_S_contig15783.4255.1 vs. uniprot
Match: A0A6H5L9G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G6_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 5.950e-66
Identity = 100/177 (56.50%), Postives = 123/177 (69.49%), Query Frame = 1
Query:  439 LPMENPEDGMSCSTYDEDVDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADDADIDSHILPLYHYVTNVNRTDD-GGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYRLDEPKGEMEYNLVRECDN 966
            L + +  DG SC+TYDED++VA +L +TCEW+TYMCC+T HD  +G+  N DVC V   P EG V           YCHGFAW D AD+++HILPLYHYV N+ RT++ GGYYG+VEG P CGCIE+MP VS A CS+F  +GI  C +  L SQY  RL  P GEME+NLVR CDN
Sbjct:   17 LAVSSASDGGSCTTYDEDLEVAKLLDDTCEWDTYMCCFTNHDSGEGVTANTDVCSV---PNEGSV-----------YCHGFAWPDGADVNNHILPLYHYVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFDIDGIVGCGEGGLYSQYNGRLGAPYGEMEHNLVRSCDN 179          
BLAST of mRNA_Ecto-sp13_S_contig15783.4255.1 vs. uniprot
Match: A0A6H5JNM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM0_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 6.840e-22
Identity = 49/62 (79.03%), Postives = 49/62 (79.03%), Query Frame = -3
Query:  293 WSRTSRPPGSPSAAVPLPCLALPSAHCPTSASSPYPHPPSSRCSTPWDLTWFPCRGWALGCP 478
            WSRTSRP G PSAAVPLP L LP  H PTSASSP  HPPSSR STPWDLTW PCR WA GCP
Sbjct:    2 WSRTSRPAGFPSAAVPLPPLPLPLTHRPTSASSPCLHPPSSRRSTPWDLTWSPCRVWAPGCP 63          
BLAST of mRNA_Ecto-sp13_S_contig15783.4255.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 8.440e-21
Identity = 45/91 (49.45%), Postives = 58/91 (63.74%), Query Frame = 1
Query:  973 VPDYDFRTCSHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFG 1245
            V ++DF  C +NT+MCCW   +G  + DNTDVC        GE  E+PG+SEG VHCHGFVWPE+A+D +I  LA  V   +H D + Y G
Sbjct:   51 VKNFDFNQCDYNTWMCCWDGRNGLAVKDNTDVCSY-----RGE--EFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDEKAYTG 134          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15783.4255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2N0_ECTSI7.790e-29791.87Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7G2N2_ECTSI5.230e-24981.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT55_ECTSI1.410e-16671.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT81_9PHAE1.700e-16697.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT54_ECTSI1.540e-15555.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L319_9PHAE8.150e-13458.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT53_ECTSI8.720e-7561.58Imm downregulated 17 n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L9G6_9PHAE5.950e-6656.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNM0_9PHAE6.840e-2279.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8D2_ECTSI8.440e-2149.45Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15783contigEcto-sp13_S_contig15783:570..4064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score824.7
Seed ortholog evalue1.9e-236
Seed eggNOG ortholog2880.D7G2N0
Model size1251
Hectar predicted targeting categorysignal peptide
Exons6
EggNOG OGs2E0FN@1,2S7W7@2759
Cds size1251
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15783.4255.1prot_Ecto-sp13_S_contig15783.4255.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15783 570..4064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462834.2300887-CDS-Ecto-sp13_S_contig15783:569..10611681462834.2300887-CDS-Ecto-sp13_S_contig15783:569..1061Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15783 570..1061 +
1681462834.2410069-CDS-Ecto-sp13_S_contig15783:1325..15041681462834.2410069-CDS-Ecto-sp13_S_contig15783:1325..1504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15783 1326..1504 +
1681462834.2505665-CDS-Ecto-sp13_S_contig15783:1923..20311681462834.2505665-CDS-Ecto-sp13_S_contig15783:1923..2031Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15783 1924..2031 +
1681462834.263858-CDS-Ecto-sp13_S_contig15783:2425..24941681462834.263858-CDS-Ecto-sp13_S_contig15783:2425..2494Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15783 2426..2494 +
1681462834.2746062-CDS-Ecto-sp13_S_contig15783:3376..35901681462834.2746062-CDS-Ecto-sp13_S_contig15783:3376..3590Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15783 3377..3590 +
1681462834.2840154-CDS-Ecto-sp13_S_contig15783:3875..40641681462834.2840154-CDS-Ecto-sp13_S_contig15783:3875..4064Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15783 3876..4064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15783.4255.1

>prot_Ecto-sp13_S_contig15783.4255.1 ID=prot_Ecto-sp13_S_contig15783.4255.1|Name=mRNA_Ecto-sp13_S_contig15783.4255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=417bp
MYKSYLSMCAGPLLLAFAVKAADYNAPAPTPSPTYARPVSRYSGPTPTYG
SESSDSLDANAGPNDDYTSPATTPSPTTEIYPDLSESYDAEVTPEPVMDT
PAPTPDMETTSGPTEYYIETTEDGDMEKMPTSDSGPKEEQDKEEEPLPME
NPEDGMSCSTYDEDVDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVC
RVLDYPEEGDVLELPRDDEGPVYCHGFAWADDADIDSHILPLYHYVTNVN
RTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQ
YKYRLDEPKGEMEYNLVRECDNEDVPDYDFRTCSHNTYMCCWTENDGQGM
ADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQ
FVQHFDHRDRRGYFGK*
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mRNA from alignment at Ecto-sp13_S_contig15783:570..4064+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15783.4255.1 ID=mRNA_Ecto-sp13_S_contig15783.4255.1|Name=mRNA_Ecto-sp13_S_contig15783.4255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15783:570..4064+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACAAGTCATACCTCTCGATGTGCGCCGGGCCGCTGCTGCTCGCCTT TGCCGTCAAAGCTGCCGACTACAACGCGCCGGCCCCGACCCCATCCCCGA CCTACGCGAGACCGGTCTCAAGGTACTCGGGTCCTACCCCAACATACGGG TCTGAATCCTCGGACTCTTTGGACGCCAACGCCGGTCCCAACGACGACTA CACCTCGCCGGCCACGACCCCGTCCCCGACCACCGAGATCTACCCCGACT TGAGTGAATCCTACGATGCGGAGGTGACCCCGGAGCCGGTCATGGACACC CCAGCGCCCACCCCCGACATGGAAACCACGTCAGGTCCCACGGAGTACTA CATCGAGACGACGGAGGATGGGGATATGGAGAAGATGCCGACGTCGGACA GTGGGCCGAAGGAAGAGCAAGACAAGGAAGAGGAACCGCTGCCGATGGAG AACCCGGAGGACGGGATGTCCTGCTCCACGTACGACGAGGATGTGAGTAC CTGTAGATACGGGGCATAAGCTTTCTCCTGAAAACGCAGGGCACAGAGAG GTAAAATAGATTTTATATTTTTCCTGGTGAACCAACATTTACCCGTTACG ACTTGCTTTCCTCACGCTGCGGGCTCACTCTCACGCGTTACGGGTTTTGA AGTCGCCAACCTTCTCGCATCTCAAAAGAATGACCACGCCCACGTTTTCG ACAGCCTCAACCAACGCTTCGAACCTTTCCTTCTTTTCCAAAATCAAAAC CCTCAGGTGGATGTGGCCACTATCCTCCCCGAGACGTGCGAATGGAACAC CTACATGTGCTGCTGGACCGGCCACGACGGGTCCAAGGGCATGTACGGCA ACGCCGATGTCTGCCGCGTGCTGGACTACCCCGAGGAGGGCGATGTCCTC GAACTGCCCCGCGACGATGAAGGCCCTGTGTACTGGTGCGTTGGTACCAG AGTGCTTGGCGTCTGTGGCTTGCAGAAACATTCCTCCAAGGCTAAGCCAC ATGGAGTGGTATGTGGCTGTTGACTACTATTACCGTACATTTAGTCTTGG CAGTTGAAAAAAATGCGGAATCCTTAATTCGGCGCTGTAAAATGTATTCT GCTCTGCGCTGTGTTCCGGTGCTGCAACCCTGGGCGTGTGCTTGCAGCAG TGACATTGCGTAGCCCCCCTTGAAGTTCTCAGATGTTCCTGAGCAAGAGG GAACAGTATGAAAAGCTGACGACAGACGTCTAATCACTGCATGGCAACGG CGCCACCACGCTCTCTTCCCCGACGTTGCTCCCGCCCCCCGCCCCGCCCT CCCGTTGCGCATCGAACGGCATGTGCTTATGTACTTGTTTCCGACCAACC GCAGCCACGGCTTCGCCTGGGCAGACGACGCGGACATCGACAGCCACATC CTCCCCCTGTACCACTACGTGACGAACGTGAACCGCACCGACGACGGGGG GTACTACGGAAAGTGAGCTCATAAATTAGCACCATGTCACGTTTTAGCGC TTGTCTCGCAGCAGAATAGACGCCAAACGAAACAAAGCATCATGTGGTAC ATCCAGGAGTAGAATTGGCGGAGAAACCTGTGACCCGCTGACCGGGAAGA CGATTGCTGTGCACTGTGCCAGCAGTGAGGCCCTTGAGCTCGACGGGTTA TTCGCCAGCGCTCGTCGAATGGAGAAGGCAAGTACGTTATAGTACTCGGC CCGTTTGTTCCACGGTTACCTAACTTCTCGATTTCTCTGATCCAGTTCAG TGCGGCGAAGTCTTGCAACGTCGACTTGCGCGTCTACTTAAGGAAACCCG TCCCGTCCCAGCGACCAACAACCCTCTTCATCCCCCACCTGTGCTGGCAC TTGCAGCGTCGAGGGAGTGCCTTCGTGTGGATGCATCGAGGACATGCCGG TCGTATCCGATGCGGCGTGCTCCAAGTGAGTTTCTTTGATCGCTTGTTTC ATTCGACGACTCATGGATAGAACGTCGAACGACCCAATCTACCCCACTAT TGACAACTTTGTTCAACCGCTCATGGGACACCCGTGGGCTACCCATGTTA AACCGCTCATGTGACACCCGTGGGTAACCCATGGGCCCAAAATGGGCACT TCAAGTTGGAACTTCGCCACCGGCATATCAACCTAGAACTCGACCACATT CACATAAAACTAAAAACTTTGCCGCCAGTGCCCACCCTGTTCGTACCGTG TCGGCTTGGGGTCAGGGTCATGTTAGCGTTATGGTTAGTAGCCTCTATAG TGCCCGTTCCGAAGCAGATCAACTTTTGTACAGAAGTACGCTCGTTCGGT TAAACGACTCTCATTGGCCGCCCATGGGCCGCTCATGAGCTGCCCACGGG CTACCCATGGGCACGCTAATGATGGGCTGGCTGCCCATGGACCTAACCGG GGCCCCCCGATGGGAGTCCCATGGGTCGTTTGAGAAAACGATAGATAGTG TGGGAGACCCTAACGAACCTACACGTCGAGCATACACGCCACCATGGTGC ACGTGCAGTGTGCTTTCGGCTTTGGAGACGCTGTTTGTTGGCCTCGACTT TAGTCGACGAACGCGTGCTCGTGTAACAATCCAGAGGAAGGACCGTGGTT GCGCATGGGCCGCTGATGCTTACTGTTGTGCCCTTCATGCAGGTGCAGCC GCAGGAGACATAAAGTTGTCGTCGTCAGTATCGTTTTTCTCTCTACATTG TAGCACATTGAGGAAAACCTTGTTGTGTCACAGTTTCAAATGAATGGATA GGCAACCCCCCCTCCCCTACCGGTTCTTATCCTTATCCGACCCCGCCCGG AATGCAGGTTCGGAGGCGAAGGGATCGAGCCTTGCTGGGACAACAGTCTT CGTTCGCAGTACAAGTACAGGCTAGACGAACCAAAGGGCGAGATGGAATA CAACCTGGTCAGAGAGTGCGACAACGAGGACGTGCCCGACTACGACTTCC GCACCTGCAGCCACAACACGTACATGTGCTGCTGGACGGAGAACGACGGC CAGGGGATGGCTGACAACACGGTGCGGTGTTAGTCATACCTCTTCATTCC ATGACCCTACCGGAGTACGATGCCTCATGTCGAGTTCGCTCCTTGTTTCT GTGCGAACAATTTTTATCGCGCAAGCTCCTTGTGTTCGCCAACGCACTAA GACAGAAGCTGTCGTTGAGGCTCTTTCGCGAAAAACCCGTCATAACTACC AAACACTACTACTTCGAAGTATCCACTTGTTGAACATCGCTTGGGGCAGG TCACGGTTAGCAACCCCTGACCTTGTGCTATTCCATTCTGTTACCCAACG ATGCAGGATGTCTGCCGAGTGATCGACTACCCGTCGATGGGCGAGACCAC CGAGTACCCCGGAGAGAGCGAGGGAGAGGTGCACTGCCATGGGTTCGTGT GGCCGGAGGACGCCACCGACAAGTACATCCACCTCCTGGCGCAGTTCGTG CAGCACTTCGACCACAGGGACAGGCGGGGCTACTTTGGAAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15783:570..4064+

>mRNA_Ecto-sp13_S_contig15783.4255.1 ID=mRNA_Ecto-sp13_S_contig15783.4255.1|Name=mRNA_Ecto-sp13_S_contig15783.4255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1251bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15783:570..4064+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACAAGTCATACCTCTCGATGTGCGCCGGGCCGCTGCTGCTCGCCTT
TGCCGTCAAAGCTGCCGACTACAACGCGCCGGCCCCGACCCCATCCCCGA
CCTACGCGAGACCGGTCTCAAGGTACTCGGGTCCTACCCCAACATACGGG
TCTGAATCCTCGGACTCTTTGGACGCCAACGCCGGTCCCAACGACGACTA
CACCTCGCCGGCCACGACCCCGTCCCCGACCACCGAGATCTACCCCGACT
TGAGTGAATCCTACGATGCGGAGGTGACCCCGGAGCCGGTCATGGACACC
CCAGCGCCCACCCCCGACATGGAAACCACGTCAGGTCCCACGGAGTACTA
CATCGAGACGACGGAGGATGGGGATATGGAGAAGATGCCGACGTCGGACA
GTGGGCCGAAGGAAGAGCAAGACAAGGAAGAGGAACCGCTGCCGATGGAG
AACCCGGAGGACGGGATGTCCTGCTCCACGTACGACGAGGATGTGGATGT
GGCCACTATCCTCCCCGAGACGTGCGAATGGAACACCTACATGTGCTGCT
GGACCGGCCACGACGGGTCCAAGGGCATGTACGGCAACGCCGATGTCTGC
CGCGTGCTGGACTACCCCGAGGAGGGCGATGTCCTCGAACTGCCCCGCGA
CGATGAAGGCCCTGTGTACTGCCACGGCTTCGCCTGGGCAGACGACGCGG
ACATCGACAGCCACATCCTCCCCCTGTACCACTACGTGACGAACGTGAAC
CGCACCGACGACGGGGGGTACTACGGAAACGTCGAGGGAGTGCCTTCGTG
TGGATGCATCGAGGACATGCCGGTCGTATCCGATGCGGCGTGCTCCAAGT
TCGGAGGCGAAGGGATCGAGCCTTGCTGGGACAACAGTCTTCGTTCGCAG
TACAAGTACAGGCTAGACGAACCAAAGGGCGAGATGGAATACAACCTGGT
CAGAGAGTGCGACAACGAGGACGTGCCCGACTACGACTTCCGCACCTGCA
GCCACAACACGTACATGTGCTGCTGGACGGAGAACGACGGCCAGGGGATG
GCTGACAACACGGATGTCTGCCGAGTGATCGACTACCCGTCGATGGGCGA
GACCACCGAGTACCCCGGAGAGAGCGAGGGAGAGGTGCACTGCCATGGGT
TCGTGTGGCCGGAGGACGCCACCGACAAGTACATCCACCTCCTGGCGCAG
TTCGTGCAGCACTTCGACCACAGGGACAGGCGGGGCTACTTTGGAAAGTG
A
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