mRNA_Ecto-sp13_S_contig15780.4254.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15780.4254.1
Unique NamemRNA_Ecto-sp13_S_contig15780.4254.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15780.4254.1 vs. uniprot
Match: A0A6H5KJ03_9PHAE (Aminotran_1_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJ03_9PHAE)

HSP 1 Score: 515 bits (1326), Expect = 2.840e-181
Identity = 251/263 (95.44%), Postives = 255/263 (96.96%), Query Frame = 1
Query:    4 LLLVAA--AGGRWTLDWNGMEEAMRKHPETALLMLCNPYNPVGRVFTEEELLRIGDFCERHDLTIVSDEIHSDLILDEGVRHISMLALDNGRFASRTILLNAPSKTYNVPGLGCSYAIIPDKNLRVGFERAGAGWIGLNSPLGYVGCEAAYTEGEPWRQALLEHLRGNRAALYAFMEEKLPELRLDPMEATYLAWVDVTKLGWKSPAKEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRLEQAVIKEYREKQDGVL 786
            L+LV A  AGGRWTLDWNGMEEAMRKHPETALLMLCNPYNPVGRVFTEEELLR+GDFCERHDLTIVSDEIHSDLILDEGVRHISMLALDNGRFASRTILLNAPSKTYNVPGLGCSYAIIPDK +R GFERA AGWIGLNSPLGYVGCEAAYTEGEPWRQALLEHLRGNRAALYAFMEEKLPELRLDPMEATYLAWVDVTKLGWKSPA EFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRR+EQAVI EYREKQDGVL
Sbjct:  203 LVLVPADRAGGRWTLDWNGMEEAMRKHPETALLMLCNPYNPVGRVFTEEELLRVGDFCERHDLTIVSDEIHSDLILDEGVRHISMLALDNGRFASRTILLNAPSKTYNVPGLGCSYAIIPDKKMRGGFERAAAGWIGLNSPLGYVGCEAAYTEGEPWRQALLEHLRGNRAALYAFMEEKLPELRLDPMEATYLAWVDVTKLGWKSPAMEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRMEQAVIIEYREKQDGVL 465          
BLAST of mRNA_Ecto-sp13_S_contig15780.4254.1 vs. uniprot
Match: A0A835ZGK3_9STRA (Aminotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGK3_9STRA)

HSP 1 Score: 279 bits (714), Expect = 3.570e-88
Identity = 140/251 (55.78%), Postives = 165/251 (65.74%), Query Frame = 1
Query:   34 WTLDWNGMEEAMRKHPETALLMLCNPYNPVGRVFTEEELLRIGDFCERHDLTIVSDEIHSDLILDEGVRHISMLALDNGRFASRTILLNAPSKTYNVPGLGCSYAIIPDKNLRVGFERAGAGWIGLNSPLGYVGCEAAYTEGEP------------WRQALLEHLRGNRAALYAFMEEKLPELRLDPMEATYLAWVDVTKLGWKSPAKEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRLEQAV 750
            WT DW  ME A+ + P+   L+LCNP+NPVGRVF+  EL R+G+FCER+D+ I SDEIH DL+L+EGV H+ M ALD GRFA+RTI +NAPSKT+NVPGLGCSYA+I D  LR  F R   G I  N  LGYV CEAAY                 WR AL   LRGNR  +Y F+  + PE+   PM ATYLAW+DV  L W+ P  EFER GVGLTDG+ F   GYVR+NF  PR  L EGL RL   V
Sbjct:  220 WTFDWEAMEAAISQKPDIGALLLCNPHNPVGRVFSAAELRRLGEFCERYDVVICSDEIHCDLVLEEGVAHVPMAALDEGRFAARTITVNAPSKTFNVPGLGCSYAVIADCALRRRFLREARGIITQNPTLGYVACEAAYATRSSGXXXXXXXXXXAWRAALRARLRGNRDLVYTFLCARAPEVIAHPMAATYLAWLDVRALAWRDPVLEFERGGVGLTDGRFFGAPGYVRLNFGLPRWRLEEGLERLAAVV 470          
BLAST of mRNA_Ecto-sp13_S_contig15780.4254.1 vs. uniprot
Match: A0A6N6ZGK8_9BACT (Cystathione beta-lyase n=1 Tax=Puniceicoccaceae bacterium 5H TaxID=2508868 RepID=A0A6N6ZGK8_9BACT)

HSP 1 Score: 265 bits (677), Expect = 5.540e-84
Identity = 122/240 (50.83%), Postives = 167/240 (69.58%), Query Frame = 1
Query:   28 GRWTLDWNGMEEAMRKHPETALLMLCNPYNPVGRVFTEEELLRIGDFCERHDLTIVSDEIHSDLILDEGVRHISMLALDNGRFASRTILLNAPSKTYNVPGLGCSYAIIPDKNLRVGFERAGAGWIGLNSPLGYVGCEAAYTEGEPWRQALLEHLRGNRAALYAFMEEKLPELRLDPMEATYLAWVDVTKLGWKSPAKEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRLEQA 747
            GR+T DW  +EEA+   P T + +LCNP+NPVGRV+T EEL ++ +FCERHDL ++SDEIH DL+L++G +H  ML L     A RT+ + APSKTYN+PGL C++ ++PD  +R  ++    G+I   +  GY GC AAY  GEPWRQ LL+ LR NR  LY+F+ + LPE+++ PMEATYLAW+DV  LG  +P   FE+ G+GL++G  F   G++R NF CP  M+ EGL RL+ A
Sbjct:  141 GRYTFDWEALEEAVT--PSTRVFILCNPHNPVGRVYTREELEKVAEFCERHDLVLLSDEIHCDLLLEQGAKHTPMLKLGE-ETAKRTVAMYAPSKTYNLPGLACAFLVVPDAGIRNRYKLCARGYITEVNSFGYTGCAAAYNHGEPWRQELLQVLRNNRDRLYSFVRQMLPEVKMYPMEATYLAWMDVRALGLDNPVAHFEQYGIGLSNGADFRAPGFLRFNFGCPPAMMEEGLTRLKAA 377          
BLAST of mRNA_Ecto-sp13_S_contig15780.4254.1 vs. uniprot
Match: D5EJR4_CORAD (Aminotransferase class I and II n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865 / 04OKA010-24) TaxID=583355 RepID=D5EJR4_CORAD)

HSP 1 Score: 262 bits (670), Expect = 5.930e-83
Identity = 125/240 (52.08%), Postives = 169/240 (70.42%), Query Frame = 1
Query:   31 RWTLDWNGMEEAMRKHPETALLMLCNPYNPVGRVFTEEELLRIGDFCERHDLTIVSDEIHSDLILDEGVRHISMLALDNGRFASRTILLNAPSKTYNVPGLGCSYAIIPDKNLRVGFERAGAGWIGLNSPLGYVGCEAAYTEGEPWRQALLEHLRGNRAALYAFMEEKLPELRLDPMEATYLAWVDVTKLGWKSPAKEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRLEQAV 750
            +WTLD++ ME+ ++  P T L +LC+P+NPV RV+T +EL ++ DFCERHDL ++SDEIH DL+ DE  +HI    L N + A RT+ L APSKTYN+PGL C++++I D  LR+ F++   G I   +  GY GC AAY  GEPWRQALL +L+ N   +Y F+ E+LPE+   PMEATYLAW DVTKL   +P K FE  GVGL+DG  F G  +VR+NF CP+  L+EGL ++E+A+
Sbjct:  146 QWTLDFDAMEQLVQ--PNTKLFILCSPHNPVARVYTRKELTKLADFCERHDLILISDEIHCDLVFDETAKHIVTATL-NEQIAKRTVTLMAPSKTYNLPGLACAFSVIEDSKLRLQFQKTIRGIITEVNCFGYAGCAAAYNHGEPWRQALLTYLKSNYELVYKFIREQLPEITFRPMEATYLAWFDVTKLELDNPIKFFEDNGVGLSDGVPFDGNQHVRLNFGCPQSRLIEGLEKIERAI 382          
BLAST of mRNA_Ecto-sp13_S_contig15780.4254.1 vs. uniprot
Match: A0A355SYE6_9BACT (Aspartate aminotransferase n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A355SYE6_9BACT)

HSP 1 Score: 261 bits (666), Expect = 2.310e-82
Identity = 125/242 (51.65%), Postives = 168/242 (69.42%), Query Frame = 1
Query:   25 GGRWTLDWNGMEEAMRKHPETALLMLCNPYNPVGRVFTEEELLRIGDFCERHDLTIVSDEIHSDLILDEGVRHISMLALDNGRFASRTILLNAPSKTYNVPGLGCSYAIIPDKNLRVGFERAGAGWIGLNSPLGYVGCEAAYTEGEPWRQALLEHLRGNRAALYAFMEEKLPELRLDPMEATYLAWVDVTKLGWKSPAKEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRLEQAV 750
            G  WTLD++ ME A++  P T + +LC+P+NPV  V+T  EL ++ DFCE+HDL ++SDEIH DL+ D+  +HI    L N R A+RT+ L APSKTYN+PGL C+++II D  LR+ F++   G I   +  GY GCEAAY  GEPWRQALL++LRGN    Y F++++LP +   PMEATYLAW DV++L    P K FE  GVGLTDG  F G+ +VR+NF CPR  L+EGL ++  A+
Sbjct:  143 GETWTLDFDAMEAAIK--PNTKIFVLCSPHNPVAHVYTRAELTQLADFCEKHDLILISDEIHCDLVFDDQAKHIVTATL-NDRIAARTVTLMAPSKTYNLPGLACAFSIIEDSKLRLQFQKTIRGIITEVNCFGYAGCEAAYNHGEPWRQALLKYLRGNYELTYNFIQQQLPGITFRPMEATYLAWFDVSRLELDKPIKFFEDHGVGLTDGAPFDGKEHVRLNFGCPRSRLLEGLEKMASAL 381          
BLAST of mRNA_Ecto-sp13_S_contig15780.4254.1 vs. uniprot
Match: A0A351HDT6_9BACT (Aspartate aminotransferase n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A351HDT6_9BACT)

HSP 1 Score: 259 bits (662), Expect = 9.520e-82
Identity = 129/240 (53.75%), Postives = 166/240 (69.17%), Query Frame = 1
Query:   31 RWTLDWNGMEEAMRKHPETALLMLCNPYNPVGRVFTEEELLRIGDFCERHDLTIVSDEIHSDLILDEGVRHISMLALDNGRFASRTILLNAPSKTYNVPGLGCSYAIIPDKNLRVGFERAGAGWIGLNSPLGYVGCEAAYTEGEPWRQALLEHLRGNRAALYAFMEEKLPELRLDPMEATYLAWVDVTKLGWKSPAKEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRLEQAV 750
            +WTLD++ ME A+R  P T L +LC+P+NPVGRVFT+ EL ++G+FCERHDL ++SDEIH DLI D  V HI M A  N   A RT+ L APSKTYN+PGL C+++II +  LR  F++   G I   +  GY GC AAY  GEPWRQALL +LR N A +  F+E+++PE+   PM+ATYLAW DV+ LG K P   FE AGVGL+DG  F    ++R+NF CPR  L  GL R++ AV
Sbjct:  146 QWTLDFDAMEAAVR--PNTKLFVLCSPHNPVGRVFTQAELTQLGEFCERHDLVLISDEIHCDLIFDPEVSHI-MTATLNESVAQRTVTLMAPSKTYNLPGLACAFSIIENSRLRAQFQKTIRGIITEVNCFGYAGCAAAYQYGEPWRQALLAYLRDNYALVREFIEQEIPEITFRPMQATYLAWFDVSALGLKDPVGHFEEAGVGLSDGAPFDAPQHLRLNFGCPRHHLRAGLERMKAAV 382          
BLAST of mRNA_Ecto-sp13_S_contig15780.4254.1 vs. uniprot
Match: A0A6N4WV98_9BACT (Unannotated n=2 Tax=Lentimonas TaxID=417293 RepID=A0A6N4WV98_9BACT)

HSP 1 Score: 258 bits (660), Expect = 1.910e-81
Identity = 124/243 (51.03%), Postives = 168/243 (69.14%), Query Frame = 1
Query:   22 AGGRWTLDWNGMEEAMRKHPETALLMLCNPYNPVGRVFTEEELLRIGDFCERHDLTIVSDEIHSDLILDEGVRHISMLALDNGRFASRTILLNAPSKTYNVPGLGCSYAIIPDKNLRVGFERAGAGWIGLNSPLGYVGCEAAYTEGEPWRQALLEHLRGNRAALYAFMEEKLPELRLDPMEATYLAWVDVTKLGWKSPAKEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRLEQAV 750
            A  +WTLD++ ME A++  P T L +LC+P+NPVGRV+TE EL R+GDFCE+HDL ++SDEIH DL+ D   +HI    L     A+RT+ L APSKTYN+PGL C++++I D  LR+ F++   G I   +  GY GCEAAY  GE WRQ L+ +LRGN   +  F++E++P++   PME+TYLAW DVTKL  ++P K FE  GVGL+DG  F G  +VR+NF CPR  L EGL ++  A+
Sbjct:  143 ASDQWTLDFDAMEAAVK--PNTKLFILCSPHNPVGRVYTEAELTRLGDFCEKHDLILISDEIHCDLVFDANAQHIVTAKLSE-TLAARTVTLMAPSKTYNLPGLACAFSVIEDSKLRLQFQKTIRGIITEVNCFGYAGCEAAYNHGEAWRQELITYLRGNYELISKFLKEQIPDITFRPMESTYLAWFDVTKLELENPVKFFEDNGVGLSDGTPFDGIQHVRLNFGCPRSRLQEGLEKMAAAL 382          
BLAST of mRNA_Ecto-sp13_S_contig15780.4254.1 vs. uniprot
Match: A0A350ARW9_9BACT (Aspartate aminotransferase n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A350ARW9_9BACT)

HSP 1 Score: 258 bits (658), Expect = 3.820e-81
Identity = 123/240 (51.25%), Postives = 169/240 (70.42%), Query Frame = 1
Query:   31 RWTLDWNGMEEAMRKHPETALLMLCNPYNPVGRVFTEEELLRIGDFCERHDLTIVSDEIHSDLILDEGVRHISMLALDNGRFASRTILLNAPSKTYNVPGLGCSYAIIPDKNLRVGFERAGAGWIGLNSPLGYVGCEAAYTEGEPWRQALLEHLRGNRAALYAFMEEKLPELRLDPMEATYLAWVDVTKLGWKSPAKEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRLEQAV 750
            +WTLD+  ME A++  P T + +LC+P+NPVGRV+T +ELL++G+FC RHDL ++SDEIH DL+ D   +HI    L     A+RT+ L APSKTYN+PGL C++++I D  LR+ F+++  G I   +  GY GCEAAY  GEPWRQ LL +LRGN   LY F+ E+L  +   PME+TYLAW DV +LG ++P + FE  GVGLTDG  F G+ +VR+NF CPR  L+EGL +++ A+
Sbjct:  146 QWTLDFEAMEAAVK--PSTKIFVLCSPHNPVGRVYTRDELLKVGEFCVRHDLILISDEIHCDLVFDTSKKHIVTSTLSE-EIAARTVTLMAPSKTYNLPGLACAFSVIEDTKLRLQFQKSIRGIITEVNCFGYAGCEAAYNLGEPWRQQLLTYLRGNYELLYKFINEELSGITFRPMESTYLAWFDVKELGLENPIQFFEDNGVGLTDGGPFGGQQHVRLNFGCPRSRLIEGLEKMQTAL 382          
BLAST of mRNA_Ecto-sp13_S_contig15780.4254.1 vs. uniprot
Match: A0A317ZKR2_9BACT (Aspartate aminotransferase n=1 Tax=Coraliomargarita sinensis TaxID=2174842 RepID=A0A317ZKR2_9BACT)

HSP 1 Score: 257 bits (656), Expect = 7.640e-81
Identity = 124/240 (51.67%), Postives = 166/240 (69.17%), Query Frame = 1
Query:   31 RWTLDWNGMEEAMRKHPETALLMLCNPYNPVGRVFTEEELLRIGDFCERHDLTIVSDEIHSDLILDEGVRHISMLALDNGRFASRTILLNAPSKTYNVPGLGCSYAIIPDKNLRVGFERAGAGWIGLNSPLGYVGCEAAYTEGEPWRQALLEHLRGNRAALYAFMEEKLPELRLDPMEATYLAWVDVTKLGWKSPAKEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRLEQAV 750
            RWTLD   ME A++ H  T LL+LC+P+NPVGRVF +EEL+ + DFCERHDL ++SDEIH DL+ D+ V+H ++ A  N   A RT+ L APSKTYN+PGL C++++I D  LR  F     G I   +  GY  C+AAY  GEPWRQ LL +LRGN   +Y F++ +LP++   PME+TYLAW DV+ L    P + FE+ GVGL+DG  F G+ ++R+NF CPR  L EGL+R++ AV
Sbjct:  146 RWTLDIEAMEAAVKPH--TRLLVLCSPHNPVGRVFNKEELIELADFCERHDLILISDEIHCDLVFDQSVKH-TVTATLNESIAKRTVTLMAPSKTYNLPGLACAFSVIEDPQLRTQFRNTTRGIITEVNCFGYAACQAAYNHGEPWRQELLRYLRGNYELVYDFIKRELPQITFRPMESTYLAWFDVSGLKLDKPTQFFEQHGVGLSDGVPFDGKEHLRLNFGCPRARLEEGLQRMKSAV 382          
BLAST of mRNA_Ecto-sp13_S_contig15780.4254.1 vs. uniprot
Match: A0A357I4R0_9BACT (Aspartate aminotransferase n=2 Tax=Opitutae TaxID=414999 RepID=A0A357I4R0_9BACT)

HSP 1 Score: 256 bits (655), Expect = 1.150e-80
Identity = 126/242 (52.07%), Postives = 164/242 (67.77%), Query Frame = 1
Query:   22 AGGRWTLDWNGMEEAMRKHPETALLMLCNPYNPVGRVFTEEELLRIGDFCERHDLTIVSDEIHSDLILDEGVRHISMLALDNGRFASRTILLNAPSKTYNVPGLGCSYAIIPDKNLRVGFERAGAGWIGLNSPLGYVGCEAAYTEGEPWRQALLEHLRGNRAALYAFMEEKLPELRLDPMEATYLAWVDVTKLGWKSPAKEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRLEQA 747
            A  +WTLD   ME A++  P T + +LC+P+NPVGRV+T+EEL  + DFCERHDL ++SDEIH DL+ DE  +HI    L   R A RT+ L APSKTYN+PGL C+Y++I +  LRV F++   G I   +  GY G  AAY  GEPWRQ LL +LRGN   +Y F++  LPE+   PME+TYLAW DV+KLG K+P   FE+ GVGL+DG  F G  ++R+NF CPR  L EGL  + +A
Sbjct:  143 ADDQWTLDIEAMEAAVQ--PNTKIFVLCSPHNPVGRVWTKEELTAVADFCERHDLILISDEIHCDLVFDEDAKHIVTATLSE-RVAQRTVTLMAPSKTYNLPGLACAYSVIENPKLRVEFQKTIRGIITEVNCFGYAGITAAYNHGEPWRQELLTYLRGNYNLIYQFIQNALPEITFRPMESTYLAWFDVSKLGLKNPVGHFEKHGVGLSDGTPFDGPQHLRLNFGCPRARLEEGLALIAKA 381          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15780.4254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJ03_9PHAE2.840e-18195.44Aminotran_1_2 domain-containing protein n=2 Tax=Ec... [more]
A0A835ZGK3_9STRA3.570e-8855.78Aminotransferase n=1 Tax=Tribonema minus TaxID=303... [more]
A0A6N6ZGK8_9BACT5.540e-8450.83Cystathione beta-lyase n=1 Tax=Puniceicoccaceae ba... [more]
D5EJR4_CORAD5.930e-8352.08Aminotransferase class I and II n=1 Tax=Coraliomar... [more]
A0A355SYE6_9BACT2.310e-8251.65Aspartate aminotransferase n=1 Tax=Opitutae bacter... [more]
A0A351HDT6_9BACT9.520e-8253.75Aspartate aminotransferase n=1 Tax=Opitutae bacter... [more]
A0A6N4WV98_9BACT1.910e-8151.03Unannotated n=2 Tax=Lentimonas TaxID=417293 RepID=... [more]
A0A350ARW9_9BACT3.820e-8151.25Aspartate aminotransferase n=1 Tax=Opitutae bacter... [more]
A0A317ZKR2_9BACT7.640e-8151.67Aspartate aminotransferase n=1 Tax=Coraliomargarit... [more]
A0A357I4R0_9BACT1.150e-8052.07Aspartate aminotransferase n=2 Tax=Opitutae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15780contigEcto-sp13_S_contig15780:157..2755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score519.2
Seed ortholog evalue1.1e-144
Seed eggNOG ortholog2880.D7FPI8
Model size789
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.transferase activity, transferring nitrogenous groups
EggNOG OGsCOG0436@1,KOG0257@2759
Cds size789
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462834.170366-CDS-Ecto-sp13_S_contig15780:156..2801681462834.170366-CDS-Ecto-sp13_S_contig15780:156..280Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15780 157..280 +
1681462834.1797915-CDS-Ecto-sp13_S_contig15780:1260..14061681462834.1797915-CDS-Ecto-sp13_S_contig15780:1260..1406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15780 1261..1406 +
1681462834.1887138-CDS-Ecto-sp13_S_contig15780:1921..22531681462834.1887138-CDS-Ecto-sp13_S_contig15780:1921..2253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15780 1922..2253 +
1681462834.1988878-CDS-Ecto-sp13_S_contig15780:2568..27551681462834.1988878-CDS-Ecto-sp13_S_contig15780:2568..2755Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15780 2569..2755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15780.4254.1prot_Ecto-sp13_S_contig15780.4254.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15780 157..2755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15780.4254.1

>prot_Ecto-sp13_S_contig15780.4254.1 ID=prot_Ecto-sp13_S_contig15780.4254.1|Name=mRNA_Ecto-sp13_S_contig15780.4254.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=263bp
MLLLVAAAGGRWTLDWNGMEEAMRKHPETALLMLCNPYNPVGRVFTEEEL
LRIGDFCERHDLTIVSDEIHSDLILDEGVRHISMLALDNGRFASRTILLN
APSKTYNVPGLGCSYAIIPDKNLRVGFERAGAGWIGLNSPLGYVGCEAAY
TEGEPWRQALLEHLRGNRAALYAFMEEKLPELRLDPMEATYLAWVDVTKL
GWKSPAKEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRLEQAV
IKEYREKQDGVL*
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mRNA from alignment at Ecto-sp13_S_contig15780:157..2755+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15780.4254.1 ID=mRNA_Ecto-sp13_S_contig15780.4254.1|Name=mRNA_Ecto-sp13_S_contig15780.4254.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2599bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15780:157..2755+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCTCTTGGTTGCCGCAGCCGGGGGGCGGTGGACCCTAGACTGGAA CGGGATGGAAGAGGCCATGAGGAAGCACCCAGAGACCGCGCTGCTGATGC TGTGCAACCCGTACAACCCCGTCGGTGAGCCGGATGCGTCGAAATGGGGC ACCGCAGTGATCGGCTTCACGTCCAACGAAATGGCGATAGTGCTTGGCGG TTGGGGGGGTAGGTATGGATTTTATTTTTCCTGGTTCGTGGGAAGGGTAT ATCGGGTGGTTGTTTCTTTGCTACCGCTGCTCGTGTAGTGGTTCCGTGGA CTCATGACATGTGACAAACCGCGCGCGGCAGATGGAGGCACCTTGCATCG GATGATAAGGGCATAACAATAACACAGAGTAGTGTCGAGTTCTTCAAGAA GCTGACAAATTCAATGGTGTCTGCTCCCGCGACCATGCCGTTCACACGCA CGCGCACACGACTTTCGGTTTCATGCTACTGCTGGTGATGCTGCTAGGGC TGCCGCTCTCGCTTACGCCGCCAGAACAACGCTGTTCCACCCACGCCGCC ACTGCGAAGTCCATTTCAGCTGCACATCTATGCACGATATTCATGCACCG TCCATCATTGTACCCTCAAGTAAGAATGGTTTCTTTGATATGCATGGCGC CAGGAGACTTGTTGTAGAAATCGCCATTTTTTTCATTGCAGACGAGTCAC CCACTACACAACGGCCTTATGGATTGCTTACATCATCGGGTACTGTAGCA TATGTTAAATGCGTGCGCACACCTCCAAAAACCGCTCGCCGCCAAATGTT GGCGTCGCCACGAACACACATATAGGTACAACAGATATTTTCCCGGCACC CGGGCATGCATGGCCATCGACGTAGTACCACGGCTCACGGGGCTTTTTCA TCCGATCTGTCGGGGCCGACTATGGAGTCGGACCTCGAAAACAGCTCGCG GGCATCCCCGGTTCTCTCTAGCGGGTGACATCTTATTCCTGTACCCGCGC CCAAACCTGGTTTTATTGCGTGGCCTTCATGACGCTCGTGAGTCCGATAA GATGATGCACCGCCTGTTGCTTCGCGTGGGGCGTTGTTGTCGTGGCAATG GCAGGGAGGGTTTTCACCGAGGAAGAGCTCTTGAGGATCGGGGACTTTTG TGAGCGGCACGATCTCACGATCGTCTCGGACGAGATTCACTCAGACCTCA TACTAGACGAAGGCGTTCGACACATTTCGATGCTGGCTTTGGATAACGGG GTACGTGCAACCGATCTCTCCCACTTGTTGCCAAAACAAATGCACGCGTG GCACACACGGGAGAGGTTGCGAACCATGCGTGACTACTCTTGTCTGGGTA CCCCTAGTATGTTCTTCTGAACTAGACATATCGGTGAGCATACGCGCAGG TGGGATGATGAGCGTGAGCTCCGAGACGGTGTGTCCAGGCACCAAATCGA TATACTCGAGCAGTTTTTTTGGACGTATTTTCGCGTGTGCGCTGTTTTAT GCGTTTTATGGTTCGAAGCGCTGCGAGCGATTTCCGTCCGGATCTGTGGA GGTTACGCGTGTTTAACAGTGTTTGTACAAAGAACATAAGCGTCTATTCG TACTGTGGTCGAAACCAACAAAACCTGTGGGGATCCGCACGGTTGGCTTG AGTATCAAGATTGTTCTCTCTCTCAACCGTGCAAGGAGTGACGCGAGCAG CACCCTATCCCCCCCCCCCCCCCCCCCCTCCAACCCCGTTCTTTCTGTTT TCTGCAAACCTGCAGCGCTTTGCCTCTCGGACCATCTTGCTCAACGCACC GAGTAAGACATACAATGTTCCAGGCCTCGGCTGCAGCTACGCGATAATCC CCGACAAGAATTTGCGAGTGGGCTTCGAGAGAGCGGGAGCGGGTTGGATC GGCCTCAACTCCCCGCTCGGCTACGTTGGCTGCGAAGCTGCGTACACGGA GGGGGAGCCGTGGCGACAGGCGTTGCTGGAGCACTTGAGGGGAAACCGAG CCGCCTTGTACGCATTCATGGAGGAGAAGCTACCGGAGCTCCGCTTGGAC CCCATGGAAGCGACGTACCTTGCTTGGGTGGACGTGACAAAGCTGGGGTG AGCGGTCGTGCGTGGGCTTGTTGTTGTGATGGTCTGCGGAGTTGTGTTTC TTGTGTTGGCCATCTCTGGTCGTGTACAAATAAATACAGGCTTGGGCCTC GTGCGGTGGTTACCCTGTTTGTTCGTTTATCAACCATCGGTGTCAGCAGT CCCTGAAGACCCTCACGCAACAAATTTAGATCAGTTGTGATCCAATGCAT GCCCTTCCACGAACTCACCTTCCGCTTGCGACACCATCTTTTATTTATTT ATTTATTTCACCTGATTTTTTCCTCCTTCTCTCTTCGTGTCCCGTGTTCG GCGTCCGTTCAGCTGGAAGAGCCCGGCAAAGGAGTTCGAGCGAGCGGGCG TGGGGCTCACGGACGGGAAGGGTTTCCTCGGGGAGGGGTACGTGCGGATC AACTTTGCGTGTCCGCGAGAGATGCTGATGGAGGGCCTCCGACGATTGGA GCAAGCGGTCATCAAAGAGTACCGTGAGAAGCAGGATGGTGTACTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15780:157..2755+

>mRNA_Ecto-sp13_S_contig15780.4254.1 ID=mRNA_Ecto-sp13_S_contig15780.4254.1|Name=mRNA_Ecto-sp13_S_contig15780.4254.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=789bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15780:157..2755+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCTCTTGGTTGCCGCAGCCGGGGGGCGGTGGACCCTAGACTGGAA
CGGGATGGAAGAGGCCATGAGGAAGCACCCAGAGACCGCGCTGCTGATGC
TGTGCAACCCGTACAACCCCGTCGGGAGGGTTTTCACCGAGGAAGAGCTC
TTGAGGATCGGGGACTTTTGTGAGCGGCACGATCTCACGATCGTCTCGGA
CGAGATTCACTCAGACCTCATACTAGACGAAGGCGTTCGACACATTTCGA
TGCTGGCTTTGGATAACGGGCGCTTTGCCTCTCGGACCATCTTGCTCAAC
GCACCGAGTAAGACATACAATGTTCCAGGCCTCGGCTGCAGCTACGCGAT
AATCCCCGACAAGAATTTGCGAGTGGGCTTCGAGAGAGCGGGAGCGGGTT
GGATCGGCCTCAACTCCCCGCTCGGCTACGTTGGCTGCGAAGCTGCGTAC
ACGGAGGGGGAGCCGTGGCGACAGGCGTTGCTGGAGCACTTGAGGGGAAA
CCGAGCCGCCTTGTACGCATTCATGGAGGAGAAGCTACCGGAGCTCCGCT
TGGACCCCATGGAAGCGACGTACCTTGCTTGGGTGGACGTGACAAAGCTG
GGCTGGAAGAGCCCGGCAAAGGAGTTCGAGCGAGCGGGCGTGGGGCTCAC
GGACGGGAAGGGTTTCCTCGGGGAGGGGTACGTGCGGATCAACTTTGCGT
GTCCGCGAGAGATGCTGATGGAGGGCCTCCGACGATTGGAGCAAGCGGTC
ATCAAAGAGTACCGTGAGAAGCAGGATGGTGTACTGTAG
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