mRNA_Ecto-sp13_S_contig15773.4251.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15773.4251.1
Unique NamemRNA_Ecto-sp13_S_contig15773.4251.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15773.4251.1 vs. uniprot
Match: A0A6H5K3L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3L9_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 2.320e-50
Identity = 78/83 (93.98%), Postives = 81/83 (97.59%), Query Frame = 1 
Query:    1 NTCPRALLRELDHVFPGVDLNNCLAIPTNQKAVMDLVAMGDTVETEKDVLLNSFASFASGLCKQIREAGYWADYIDPCSGLPV 249
            +TCPRALLRELDHVFPGVDL+ CLAIPTNQKA MDLVAMGDTVETEKDVLLNSFASFASGLCKQIREAGYWADYIDPCSGLP+
Sbjct:   29 HTCPRALLRELDHVFPGVDLDACLAIPTNQKAGMDLVAMGDTVETEKDVLLNSFASFASGLCKQIREAGYWADYIDPCSGLPM 111
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BLAST of mRNA_Ecto-sp13_S_contig15773.4251.1 vs. uniprot
Match: A0A835Z3S3_9STRA (Methylmalonic aciduria and homocystinuria type D protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3S3_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.150e-32
Identity = 57/85 (67.06%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    1 NTCPRALLRELDHVF--PGVDLNNCLAIPTNQKAVMDLVAMGDTVETEKDVLLNSFASFASGLCKQIREAGYWADYIDPCSGLPV 249
            +TCPRAL REL HVF   GVDL  CLA+PTNQKA  DLV MG  V+ EKD LLN F  FA+ LC  +RE G+WADYIDPCSGLP+
Sbjct:    6 HTCPRALQRELTHVFRGTGVDLTGCLAVPTNQKAGTDLVNMGSDVDIEKDRLLNVFVDFAAWLCSTLREQGFWADYIDPCSGLPM 90
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BLAST of mRNA_Ecto-sp13_S_contig15773.4251.1 vs. uniprot
Match: D8LKC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKC2_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.100e-26
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 NTCPRALLRELDHVFPGVDLNNCLAIPTNQKAVMDLVAMGDTVETEKDVLLNS 159
            +TCPRALLRELDHVFP VDL++CLAIPTNQKAVMDLVAMGDTVETEKDVLLNS
Sbjct:   29 HTCPRALLRELDHVFPAVDLDDCLAIPTNQKAVMDLVAMGDTVETEKDVLLNS 81
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BLAST of mRNA_Ecto-sp13_S_contig15773.4251.1 vs. uniprot
Match: A0A1Z5JV11_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JV11_FISSO)

HSP 1 Score: 103 bits (256), Expect = 7.050e-26
Identity = 50/91 (54.95%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:    1 NTCPRALLRELDHVFPGVDLN--------NCLAIPTNQKAVMDLVAMGDTVETEKDVLLNSFASFASGLCKQIREAGYWADYIDPCSGLPV 249
            +T P+ LLRE  HVFP  +L           LAIPTNQ AV DLVA+GD +E EKD  LN F  FA+  C+++++AGYWAD+IDPCSGLP+
Sbjct:   37 HTLPKPLLREFHHVFPEENLKLPAVDEACEFLAIPTNQHAVEDLVAIGDKIEQEKDRCLNVFMEFANDFCRKLQQAGYWADFIDPCSGLPM 127
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BLAST of mRNA_Ecto-sp13_S_contig15773.4251.1 vs. uniprot
Match: A0A7S2FSY7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FSY7_9STRA)

HSP 1 Score: 103 bits (258), Expect = 8.730e-26
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:    7 CPRALLRELDHVFPGVDL-NNCLAIPTNQKAVMDLVAMGDTVETEKDVLLNSFASFASGLCKQIREAGYWADYIDPCSGLPV 249
            CP+A+ REL HVF G  + ++ +AIPTNQ + MDLV +GD VE EKD  LN F  F   +C+Q+R  GYWADYIDPCSGLP+
Sbjct:   56 CPKAMRRELKHVFTGKTVTDDWIAIPTNQHSEMDLVNVGDDVEFEKDRCLNVFMDFGKAICEQLRSCGYWADYIDPCSGLPM 137
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BLAST of mRNA_Ecto-sp13_S_contig15773.4251.1 vs. uniprot
Match: A0A7R9UF95_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF95_9STRA)

HSP 1 Score: 103 bits (258), Expect = 8.920e-26
Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    7 CPRALLRELDHVFPGVDLNN--CLAIPTNQKAVMDLVAMGDTVETEKDVLLNSFASFASGLCKQIREAGYWADYIDPCSGLPV 249
            CP+ ++REL H+FPGV       +A PT Q AV DLV +G+++E EKD LLN F +FA  +C QI+E G+WADYIDPCSGLP+
Sbjct:   48 CPKPMVRELRHIFPGVITGEEAPIAFPTVQHAVQDLVRVGESIEDEKDKLLNRFVAFAEEVCSQIKERGFWADYIDPCSGLPM 130
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BLAST of mRNA_Ecto-sp13_S_contig15773.4251.1 vs. uniprot
Match: A0A7S2CG30_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG30_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.960e-25
Identity = 45/82 (54.88%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:    7 CPRALLRELDHVFPGVDLN-NCLAIPTNQKAVMDLVAMGDTVETEKDVLLNSFASFASGLCKQIREAGYWADYIDPCSGLPV 249
            CP+  LRE+ H+FPG+D++ + LA+PT Q +VMDLV +GD VE+EKD  L  F      LC +I+  G+WADYIDPCSGLP+
Sbjct:   36 CPKQFLREIRHIFPGLDIDESLLALPTAQHSVMDLVNVGDDVESEKDRCLIQFMELGKSLCLEIQARGHWADYIDPCSGLPM 117
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BLAST of mRNA_Ecto-sp13_S_contig15773.4251.1 vs. uniprot
Match: A0A7S2Y0K1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0K1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 9.260e-25
Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:   10 PRALLRELDHVFPGVDL--NNCLAIPTNQKAVMDLVAMGDTVETEKDVLLNSFASFASGLCKQIREAGYWADYIDPCSGLPV 249
            PRALL EL HVFP   L    CLA+PT Q++  DLV  GD VE EKD  LN F+SFA  +C+++  AG+WADYIDPCSGLP+
Sbjct:   27 PRALLSELRHVFPNRSLYSEGCLAVPTLQQSTQDLVNWGDEVELEKDRCLNVFSSFARTVCERLIAAGHWADYIDPCSGLPM 108
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BLAST of mRNA_Ecto-sp13_S_contig15773.4251.1 vs. uniprot
Match: A0A7S0RSJ5_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RSJ5_9CHLO)

HSP 1 Score: 99.4 bits (246), Expect = 1.300e-24
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    1 NTCPRALLRELDHVFPGVDLNNCLAIPTNQKAVMDLVAMGDTVETEKDVLLNSFASFASGLCKQIREAGYWADYIDPCSGLPV 249
            ++CP  + RE+  VFP VDL+  L +PT Q A MDLV  G+TV+ EKD LL  F ++AS +C ++   G+WADYIDPCSGLP+
Sbjct:   18 HSCPARIRREVASVFPSVDLDKLLIVPTCQHAAMDLVQTGETVDVEKDNLLEKFMAWASAVCSKLGAQGHWADYIDPCSGLPM 100
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BLAST of mRNA_Ecto-sp13_S_contig15773.4251.1 vs. uniprot
Match: A0A7S1U3I4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3I4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.150e-24
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    7 CPRALLRELDHVFPGVDLNNCLAIPTNQKAVMDLVAMGDTVETEKDVLLNSFASFASGLCKQIREAGYWADYIDPCSGLPV 249
            C R+++REL  VFP VD+   +AIPT Q AV DLVA+G+ VE EKD LLN F  FA  + +     G+WADYIDPCSGLP+
Sbjct:   23 CQRSMIRELKSVFPTVDMAGAVAIPTVQHAVTDLVAVGEDVENEKDRLLNVFVDFAKDVVEAFAAGGFWADYIDPCSGLPM 103
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15773.4251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3L9_9PHAE2.320e-5093.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z3S3_9STRA3.150e-3267.06Methylmalonic aciduria and homocystinuria type D p... [more]
D8LKC2_ECTSI2.100e-2692.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5JV11_FISSO7.050e-2654.95Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2FSY7_9STRA8.730e-2658.54Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7R9UF95_9STRA8.920e-2656.63Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2CG30_9STRA7.960e-2554.88Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2Y0K1_9STRA9.260e-2559.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0RSJ5_9CHLO1.300e-2453.01Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A7S1U3I4_9STRA2.150e-2456.79Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15773contigEcto-sp13_S_contig15773:48..3034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score93.2
Seed ortholog evalue6.1e-17
Seed eggNOG ortholog159749.K0RM00
Model size249
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.cobalamin metabolic process
EggNOG OGsKOG3994@1,KOG3994@2759
Cds size249
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462833.7761385-CDS-Ecto-sp13_S_contig15773:47..2061681462833.7761385-CDS-Ecto-sp13_S_contig15773:47..206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15773 48..206 +
1681462833.7880547-CDS-Ecto-sp13_S_contig15773:2944..30341681462833.7880547-CDS-Ecto-sp13_S_contig15773:2944..3034Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15773 2945..3034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15773.4251.1prot_Ecto-sp13_S_contig15773.4251.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15773 48..3034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15773.4251.1

>prot_Ecto-sp13_S_contig15773.4251.1 ID=prot_Ecto-sp13_S_contig15773.4251.1|Name=mRNA_Ecto-sp13_S_contig15773.4251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
NTCPRALLRELDHVFPGVDLNNCLAIPTNQKAVMDLVAMGDTVETEKDVL
LNSFASFASGLCKQIREAGYWADYIDPCSGLPV
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mRNA from alignment at Ecto-sp13_S_contig15773:48..3034+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15773.4251.1 ID=mRNA_Ecto-sp13_S_contig15773.4251.1|Name=mRNA_Ecto-sp13_S_contig15773.4251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2987bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15773:48..3034+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACACGTGTCCTCGAGCCTTGCTACGAGAGCTAGATCACGTGTTCCCCGG
AGTAGACTTAAATAATTGCCTTGCGATACCCACAAACCAGAAGGCGGTTA
TGGACCTGGTCGCGATGGGGGACACGGTGGAGACGGAGAAAGACGTGCTA
CTCAACTCGGTGAGGCGAGGCTGGCAGATTCATTGCTTATGTTCGGGGAC
AGATAGATTTTGAACCAATATGAAACAATGGTTTGCGCCGTCGCGTACAT
ACTGTAAGTTGAGTCATGTAAACGCGCCGACGATTCAGCTGCTATCGTCA
CACAATCTTGAACGCGCCGACGATTCAGCTGCTATCGTCACACAATCTTG
TTGCATGTACCGGTCACCATTCCCTTCACATGTCCAAGGCGATTTGCCGG
GGATGGGTGCAAACGTGGATACCCAAGTACCAAGGTTTTATCGTCACGAA
GGTGTACGTGGAGGCACCTAGCTCTCCGACTGAGAGCAGACGATCCTGTT
GGGGGAGAGCGCCACTCGCAGGCCGCGAGGGATTGTAGCCAAGCGCTCAG
GCCAGCCGACGTTTCACGAGCTTGCAATGTAGGCTGTCCTGATCGCCTGA
TCGCCTGACTTCAACTCCGCCGCGGCTTACGCGTGGCGCCCTCCCGCGAC
AAGCGTCGCTGGTCGTCATGTCGGAGAGTTTGTAGCCTCAACCTGCACCT
TTGCGGCGACAAGACCGGTGCGTGGGTGTCCATATCTCCATCCCCGAGAA
ATCGTGTTGGACAGACCCTTGGACAAAAGCAGCTCTACATCACCACAGCA
GTAGGTGCAGCCCAGAGCCCAGATGTCGCAGGCCTTAGGCCACCCTAGCG
CGTCCCGGGCAGTGGTTGAGCATAGTTGTGTCTTTCCGGCGGTAATCGTC
CCATCCAGCACGCGAAAGACCGAGTCGTAGGTCGTAGTGTGGTACTAGGT
GGGGTCGTTTCGGAGGGGTTGTTTTGTTGTTTGCACTCTGTCCCCGCTTT
TGCGGAGCAATTGCTACTTCAGAGATGACGTGTACATGTATCGGCTGTTT
TGCGGGCGCGCTGCTGCGCGATAGCTCAGAACAGAGAGCTACCCCTAGCA
ACAAGGCAAAGGCAGGGTTGAGTGTCCGAATACCAGTCAGTTCGTTGGCA
GATGTCGAAGCAGCGGTTGAAATTCAGCAAGTGTGTGCGTGAGGTGGGTC
GAGCAGCAGCTAACGAGAACAGCAATTAGTCAACGACAGGTTTCCCTCGT
CCATAATCTGTTCACATAAACCATCCCTCAACGAGATCCGTCCGAGACCT
AAAGCGTCCATAAGAGGCAAGAACCTAGCACAGGACTCTGCTAGTAAAGA
GCCAAATCGGTTTGTACGTCGATGGCTGCCTGGGTCCCACGCGAACTTGA
CATCCAAGTTAATAATTGTGCTGTCTACGACGCCAAGGTTATACTTGGAT
ATCGAGATCGCTTCGGACTCAAACAGCAATGGAATACATGGCGATTCGGC
TCTACATGAGCAGGGTTGTGTGCTAGGTTCTTGCCTCTAATGGATGCTTT
TGACCTCGGACGGATCTCGTTGAGGGATGGTTTACGTGAACAGATAATTG
ACGAGGGAAACCTGCCGTTGACTAATTGCTATTCTCGCTCCTTGCTGAAC
TCCATACACGCCGATCAACACTGCTGCTGCTGCTCGACCCATCTCACGTA
CACACTGGCTGAATCCAACCACTGCTTCGATCTCTACCAACGAACTGGTA
TTCGGACACTCGGGCTTGCCTTTGCTTTGATTGCCAGGGGTGGCTCTGTA
TTCTGAGCTAGCGCGCGGCCAATCTTTGTTCGTCATATCTTAAATAGCCA
ATCCCGCCACAAAAGTGGAGACAAAGTCCAAACGACCCCTGAAACGACCT
TACTTCGTACGACACCGTAGGCACCCCACGCTCTTGGAAGAAATTCGAAA
TTTCTAGCACCTTCGAAGGGAGAAAGATGGCGCTCACAGCGCTTTGACTA
TGACCACCCTTTGGCGGCCTGCAGCGACTCTGCACAAAGGCTGCGTTTTT
GTGCCGCTATGATAGCCAGTGGGTGTTTTCCCGTCTCAGCCGCCGCAGAG
CCAGAGTCGAAAGATGTATGATGTTGGCTGAACTAGGATTACCGCAGAAG
TGGATACAGCAGTGTGATATGTTGGTCTACATACTTGTTTCTTTTTTCTT
GCATTTGTTGTTACGTGCCATTCGGAGTGCATATGAATGCTAGGTCCGTC
ATGTTTTGCGTCTTCGAGATACCCCCACCCAACTTTGTTCCTAGTCGCGT
GGAAAAGTCCGGGGTGGACACCGATTGCAGACCTTGAAAAGGACTTCCAG
TCATACCATCCCCCAAGATGGTTGAGTAGGCCCACAACTAACATGCAATT
CTTGTAGAAATGGTCAAGTATCACTCTGCCTGTTTCCTACAGCGTTGTTC
GTGATCTTTGTGAAGAATCGGCCAGCCGCTGTGATATTGTGAAGGGTGAA
GGAAAGAAACTGCTGAACCCTTCTCCGCGGATAACGGTCGCGGCTGGCAA
TGCTGCAGGAATAACGAGGAGTGTGCCACCTTGGCGTCCTACCCGGAACA
AAAATGCTAACAAGTACTGCAGCTTGTTTTTTTAGTAGTATGGAAAATGA
AATGTTGTAGGAAACAACGGTCACGTCTCGCCCTTCCCTTCCCCCCGATA
GTCTACCACCTTGACAGCCCACATGGCGGCATGCATCCGCTCTCGGCCCA
CAGCTGAATGGGTTTTTCCCCGACCCCGACCCCCTTCCCCGGCTGCCGTA
ACGACGCCTCCTGCACGGCTACATGCACACGGCGTCGATTCGGTCCGCCC
GGATGATTGAACTGGTGTGAATTCGGGGTCGGGTTGGATTTGAACAGTTC
GCCAGCTTCGCCTCGGGCCTGTGCAAGCAGATCCGAGAGGCTGGGTATTG
GGCAGACTACATCGACCCCTGCTCTGGGTTGCCGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15773:48..3034+

>mRNA_Ecto-sp13_S_contig15773.4251.1 ID=mRNA_Ecto-sp13_S_contig15773.4251.1|Name=mRNA_Ecto-sp13_S_contig15773.4251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15773:48..3034+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACACGTGTCCTCGAGCCTTGCTACGAGAGCTAGATCACGTGTTCCCCGG
AGTAGACTTAAATAATTGCCTTGCGATACCCACAAACCAGAAGGCGGTTA
TGGACCTGGTCGCGATGGGGGACACGGTGGAGACGGAGAAAGACGTGCTA
CTCAACTCGTTCGCCAGCTTCGCCTCGGGCCTGTGCAAGCAGATCCGAGA
GGCTGGGTATTGGGCAGACTACATCGACCCCTGCTCTGGGTTGCCGGTG
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