mRNA_Ecto-sp13_S_contig15764.4245.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15764.4245.1
Unique NamemRNA_Ecto-sp13_S_contig15764.4245.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15764.4245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15764contigEcto-sp13_S_contig15764:2826..4032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size484
Hectar predicted targeting categoryother localisation
Exons2
Cds size360
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462833.235085-UTR-Ecto-sp13_S_contig15764:2825..29171681462833.235085-UTR-Ecto-sp13_S_contig15764:2825..2917Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15764 2826..2917 +
1681462833.270611-UTR-Ecto-sp13_S_contig15764:4000..40321681462833.270611-UTR-Ecto-sp13_S_contig15764:4000..4032Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15764 4001..4032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462833.2455523-CDS-Ecto-sp13_S_contig15764:2917..31311681462833.2455523-CDS-Ecto-sp13_S_contig15764:2917..3131Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15764 2918..3131 +
1681462833.2550538-CDS-Ecto-sp13_S_contig15764:3854..40001681462833.2550538-CDS-Ecto-sp13_S_contig15764:3854..4000Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15764 3855..4000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15764.4245.1prot_Ecto-sp13_S_contig15764.4245.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15764 2918..4000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15764.4245.1

>prot_Ecto-sp13_S_contig15764.4245.1 ID=prot_Ecto-sp13_S_contig15764.4245.1|Name=mRNA_Ecto-sp13_S_contig15764.4245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
MRDQNFYQNERPKLLGNVATGRLHDIAQGSHYIPSPHAHTHDSATHLKAQ
HSPRAPHTPFYSSTRALSLVSGENKPASRQERRCFGQASSNLTVSSPRSG
NSSFVHVADATWSSHEAQR*
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mRNA from alignment at Ecto-sp13_S_contig15764:2826..4032+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15764.4245.1 ID=mRNA_Ecto-sp13_S_contig15764.4245.1|Name=mRNA_Ecto-sp13_S_contig15764.4245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15764:2826..4032+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCACGGGTGCATATCTGGATCCTTCCCAGAAACATTTTTCGAGCTGTG
CCCAACGGCCCGAACGCTTCCCATTTTCCCACCCGTATCAAAATGAGAGA
CCAAAACTTTTATCAAAATGAGAGACCAAAACTTCTGGGAAACGTCGCTA
CTGGGAGATTGCACGACATCGCTCAAGGTTCACACTACATCCCCTCCCCC
CACGCACACACACACGACTCGGCTACCCATCTCAAGGCTCAACATTCTCC
ACGCGCACCACACACGCCATTCTACAGCAGTACACGCGCGCTTTCGCTGG
TGTCTGGTGAGTGCGGCATGACTCGGCATGTTTTGCTTGTAACGTCTTAC
GTCGAGGAGGAGGCGAGCATACTGCTGTGCACCAGCAGTTTTATCCTTGA
TCTTGTGATGCTCGAGTCAGCTGAACTTGAACGGTCGGGGCCGGGCGGTA
GGCGGTGCCTTTGGTCGGTTGGCAATGAGCGACGTTGAATTTAAACTGTC
AACCACCCGCCGCGGAGCGCATCACATGTAACGTACAGCAGTGGGGCAGT
GGTACTGCTGTAGTCTATGGGATCTGGACCACAGCACACTCAGCACAGCA
ACACACAGCTACGCATCGATCAGGGGCTTTGAGTTATCTCGTGTAGTGTG
AGCGTGTTCATGAATGTCGTCGATACCCTGGCATGACGAAAACGTTGTTG
CTGCTGCTGCTGCCACCAGGCGAATACTCGCGTATGGAGACGACGTCAAC
ACATAATTCAACTGTTTTTTGGGAAGAGTTTACCAGTGCGCCATAGCATT
CAATGGGAAGACTACACGTACGCGAGAGCAATAGAAACATGAGCAACGGC
AGCGTTGAGATTACAAACCGTAGACGCCGCTCGAATTCTCCAACATTTTC
TCCACCAGCCGTAGCCTCGACCAAGGCCTGCCACACTATGGAACGTGAAA
ACATGCAGCTGACCGACCGTGCCCTGCTCCCACCCCACTCCCTCCCTCTG
AAACTCATATGTACTCTACCTCGGCACAGGTGAAAACAAACCTGCTTCCA
GACAAGAAAGACGCTGCTTCGGCCAAGCAAGCAGTAACTTGACGGTCTCC
TCGCCACGTTCGGGAAACAGCAGCTTCGTTCACGTGGCCGACGCAACATG
GAGTTCCCACGAAGCGCAGCGTTAGCCCTGGTCGGCCTTCTCGCCGCCAC
CAGCACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15764:2826..4032+

>mRNA_Ecto-sp13_S_contig15764.4245.1 ID=mRNA_Ecto-sp13_S_contig15764.4245.1|Name=mRNA_Ecto-sp13_S_contig15764.4245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15764:2826..4032+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGACCAAAACTTTTATCAAAATGAGAGACCAAAACTTCTGGGAAA
CGTCGCTACTGGGAGATTGCACGACATCGCTCAAGGTTCACACTACATCC
CCTCCCCCCACGCACACACACACGACTCGGCTACCCATCTCAAGGCTCAA
CATTCTCCACGCGCACCACACACGCCATTCTACAGCAGTACACGCGCGCT
TTCGCTGGTGTCTGGTGAAAACAAACCTGCTTCCAGACAAGAAAGACGCT
GCTTCGGCCAAGCAAGCAGTAACTTGACGGTCTCCTCGCCACGTTCGGGA
AACAGCAGCTTCGTTCACGTGGCCGACGCAACATGGAGTTCCCACGAAGC
GCAGCGTTAG
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