mRNA_Ecto-sp13_S_contig15759.4243.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15759.4243.1
Unique NamemRNA_Ecto-sp13_S_contig15759.4243.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15759.4243.1 vs. uniprot
Match: D7FLT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT4_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 1.120e-109
Identity = 166/172 (96.51%), Postives = 166/172 (96.51%), Query Frame = 1 
Query:    1 MSISKRDVSREVESVFTALAKARVRKDMDPEVLKSSQYLDRKLEAHLKLDWYNEQAVKSEARRQANQPPDWICLLLQRDRDARRAWQLLKAVQTSGWGGSSSKPKPAKGQLQNPEKLELVDSAALAESKLELQEERAAQGLSKEPTPSFEVEEVDDWETLDDLPGGEPTEAA 516
            MSISKRDVSREVESVFTALAKARVRKDMDPEVLKSSQYLDRKLEAHLKLDWYNEQAVKSEARRQANQPPDWICLLLQRDRDARRAWQLLKAVQTSGWGGSSSKPKPAKGQLQNPEK   VDSAALAESKLELQEERAAQGLS EPTPSFEVEEVDDWETLDDLPG EPTE A
Sbjct:    1 MSISKRDVSREVESVFTALAKARVRKDMDPEVLKSSQYLDRKLEAHLKLDWYNEQAVKSEARRQANQPPDWICLLLQRDRDARRAWQLLKAVQTSGWGGSSSKPKPAKGQLQNPEKEAYVDSAALAESKLELQEERAAQGLSNEPTPSFEVEEVDDWETLDDLPGDEPTETA 172
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15759.4243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLT4_ECTSI1.120e-10996.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15759contigEcto-sp13_S_contig15759:596..4045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size519
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001340.1
Cds size519
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15759.4243.1prot_Ecto-sp13_S_contig15759.4243.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15759 596..4045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462832.8290238-CDS-Ecto-sp13_S_contig15759:595..6371681462832.8290238-CDS-Ecto-sp13_S_contig15759:595..637Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15759 596..637 +
1681462832.839734-CDS-Ecto-sp13_S_contig15759:1040..11091681462832.839734-CDS-Ecto-sp13_S_contig15759:1040..1109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15759 1041..1109 +
1681462832.8500059-CDS-Ecto-sp13_S_contig15759:1974..20671681462832.8500059-CDS-Ecto-sp13_S_contig15759:1974..2067Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15759 1975..2067 +
1681462832.8688238-CDS-Ecto-sp13_S_contig15759:2872..30161681462832.8688238-CDS-Ecto-sp13_S_contig15759:2872..3016Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15759 2873..3016 +
1681462832.8808954-CDS-Ecto-sp13_S_contig15759:3456..35821681462832.8808954-CDS-Ecto-sp13_S_contig15759:3456..3582Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15759 3457..3582 +
1681462832.9001555-CDS-Ecto-sp13_S_contig15759:4000..40451681462832.9001555-CDS-Ecto-sp13_S_contig15759:4000..4045Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15759 4001..4045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15759.4243.1

>prot_Ecto-sp13_S_contig15759.4243.1 ID=prot_Ecto-sp13_S_contig15759.4243.1|Name=mRNA_Ecto-sp13_S_contig15759.4243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
MSISKRDVSREVESVFTALAKARVRKDMDPEVLKSSQYLDRKLEAHLKLD
WYNEQAVKSEARRQANQPPDWICLLLQRDRDARRAWQLLKAVQTSGWGGS
SSKPKPAKGQLQNPEKLELVDSAALAESKLELQEERAAQGLSKEPTPSFE
VEEVDDWETLDDLPGGEPTEAA*
back to top

mRNA from alignment at Ecto-sp13_S_contig15759:596..4045+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15759.4243.1 ID=mRNA_Ecto-sp13_S_contig15759.4243.1|Name=mRNA_Ecto-sp13_S_contig15759.4243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15759:596..4045+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCATCTCGAAAAGGGATGTGTCCCGCGAGGTGGAGTCTGTGAGTAA
CCCCAGGAGAAGGCGCACCTAGCTCAAGTAGTTGGATGCCGCTAGCCGTA
GTGTGTTGTATTGACGGGAAGTGGCGGACCTGATTTTGTGTGGTTGATTC
TTCGGAAATCGGCCTTCTGGGCATCCTTGTATCCTCGTCGTTGTTGCGTC
GTGATGACAGCGATGGTTCAACTCAGCTTTTCTGGGGGATCGGATTGGAT
CACGCCCCTTGTTGGACGTTGTGTACAGTCTCGCGTCGCCAGGGGTTGGT
ACTCGATGCCTTGCTCATGTTGCGATGGTCTTTGTTTGCGCGGATTTGGG
CGGCTGCTGCAGCTGCTATCACTGAGGCAGGACGACACCACCAATGTTTC
ACCGCTGACCTTGCTACCCGCCTCGTCGCCTAATCCCCCGTTTAGGTGTT
CACGGCCCTCGCGAAAGCGCGCGTCCGCAAGGACATGGACCCAGAAGTTC
TGAAGTCATCTCAGGTGTGTGTGTGACCCGGGGCGTATGGGATTGTTGGT
TGGGGTCGTGCTCTCCCTTTTTGGACGTGACCAGCTCTGCTGGTTCGCGG
AGGGATTTTATTTTCAGCGGCAAGAGAGACGAGGGCGAGCGAGGAGTAGC
AGCAGGTCGGAGGAAATCTCGCTGGCTCCCTGCTCCCTCCCTTGTACATG
ATCACTTGCCATTGGGAAGAAGTGATGATTTGATCTCGTGTAGCAGCATA
CCGGAGTAGCGACCTGTGCTACCTGTAAGCTCGGTCTTGTCATTGGTCGG
CATGTCTGATCTCTCGAGTCGTGTTCTTTGGGAAATTAGAACGGTTTCAG
GTATAGTCCCGGCACCGGTCCCACCCATCAAGTCTGTCATGTTGGTAAAA
AGGCTACTGTCACCGTATAGCTGTGTTGGTGTTCGTGAAAAGCTCCTTTG
GTAGCACTCTAGAGTGCAGCCCGGAGATGACTACACACCAAGTAGATAAG
GTTGTACAAAATGCCTCCTTCTTTTCTCTAGGTGCTATCAAAAAACCCAC
CACGTTGCTTTCGTAGACGCGATGTACGTTTGTGTCCCTATAAATACATT
GTGCATCCCACGTACCGCCGTTGCTGCCGTCCATCAAATCGTGAGGCATG
GTTCCTCTTGAACACGCATCATTTCATCGACCAAACATGCGCTTGTTTGT
ACCAACCTGCATGTATGTCTACATATGTCGTCTAGCATGTGGCACTTCAA
GATGAACCGCACGCCGAAGTAAGCAGTACGTGGTCGCTCTTGCCACACTC
TCACAGACCGTTTCTTCATTTTTGTGACACTTGTTTGCTCGGCGCATCCC
AACAACCGCCCCCGCATGAACAACACCAGTATTTGGACAGAAAGCTGGAG
GCTCACCTGAAGTTGGACTGGTACAACGAGCAAGCGGTCAAGAGCGAGGC
CCGTCGCCAGGCCAACCAGCCGGTGAGCGCAACAAGAAGAAGCATCACTC
ATGCACCTTTTCGCTCTTAGCCAAAAGCAAAAGAAGCCCAGCAGTACGAT
GCCTAGCAGGCTTTCTCCGCTTACTGTGTAGACTTCAACACGTCCCTTCG
ACTGCTGTGGTATTGTCTAGAACAGTTATTCTTTCGGTGGTTTAAGGCTC
TACTTCACCTGCGAAGGTGTTCTAGTTTCGGCCAGCGGTTCCGTTGAACC
TTCCCTGTTAGCACACCAGCCCACCTCCTTGAACCCCGTATGTGAGTGGG
TACAGTAGTCCTTGTTTTGATGTTGTGTCCGTTTCGTGCTTGAGAAAGTG
GTCGCAAAAAGTATGGAAGTCGCGTGCAGGTCTCATCCGGCCTGTTGCGA
ATGAAGATGTCCGAGGATTCGCATGTTTGGCCCCTCAACAGAGAAAAGCA
TTGACGGTAGATACCGCAAGGCGCGGTGGATAGGGTGCCTGAAAGATTGT
CTAAATAGGCTGATTTGAAAGCACATACGCGCTGTGCCACTGTGTGTTGG
GTGTATGTCCTCCCCGAACGCAGGGCTACTTACCAAGTTCGTGGTTGGCG
TTGACATGGTGTTGTAGATTCACTGCCCTCTCTCTGTCGCCGCGGGGCGA
TGGATCGGTCTTTCGCAAACTCTCGTTAGCAAAGCGGATTCCCGGTCCCA
GCAATGTCAACACCGCCTTTTTCTCTACACAAAAACTTTTCTACACCAAA
ACCCCATCTGACGATCCCACACACTGCTGTGTCTCTACGCTTTCGCGCTC
TTTCTGCTCTTTTGGATTTCTTTGTAGCCCGACTGGATCTGCCTTTTGCT
CCAGAGGGACCGCGACGCTCGCCGCGCGTGGCAGCTGCTGAAGGCGGTTC
AAACCTCCGGCTGGGGGGGCTCCTCGTCCAAGCCCAAGCCGGCCAAGGGG
CAGCTTCAGAACCCCGAAAAGGTGAGACGGGCGGTGTTGACTGCCTTCCA
GGAACGCCCCCCCGCCTCCCCGGGTCTTTCTCTCTTTTGCCTGCGCAAGG
AAATTGCCTCATTCGTAAGATACATGCGTATGCAATGCGTAAGGGTCGTG
ATTTCGATGTTTCCACAGGCACCATGGTGGCGGCAATACCCGTGCGATAG
TAGGACTGTAACAACACCTCTGGTTTATGTTTTGGGGTATGTCGCATCCA
CAGTTTACACGGACGTTGTATTGAACCGATGTTCAGAAACGGGCACATTT
TACCCGCGAAGATGCATCCCATTCCCCCTGTACCCCTCAGCTTCATCGTA
GGTACACTTCTTCGAGCCCGAAGTGTTTCCCGTCCTCATCCCCTCGCTGT
TGTTGCGGCGATTTTCCCCTCAGGAAGCATACGTCGATCGGCGGCCCTTG
CGGAGAGCAAGCTGGAACTCGTCGACTCGGCGGCCCTTGCGGAGAGCAAG
CTGGAACTCCAGGAGGAGCGTGCCGCACAGGGGCTGAGCAAAGAGCCCAC
GCCCTCCTTCGAAGTCGAAGAGGTCGACGACTGGGAGGTGAGGGGGTTGT
GCTTGTATGTGTTTCCTTGTTCTCGTACACTTGACTCCAAGAGCATTGAG
CACAAACTACATCGGAGGTTGGAACATATTCAGTCGGAGAGGCGTGTCTC
GGATGCGTCTGTGTACTGATCGTGTCGTCGACATTCTCGAGTTCTTCGTA
GACTCGCGTTACACTCCCTGCCGATTTGCCCCCCTCAACACAGGTGTGGA
GTATGAGCAAGTGTACGTTGGAAGCTGAATCCATGACGGATGATGTCGAA
AACCAATCCGTTGCACGCACTCGTCCTTCCCAACTTGTAGCTTCAAAGCG
TGCGTGGCGTGGCGATGCCTACAACTCGGCTGAGGTTCGTTCGGTTTGAC
GATTACTTCTCTGCCCCTACTTTCGTAACCGTTTTGCATAACGCCTCCTC
CGCAGACCCTGGACGATCTTCCCGGGGGCGAGCCGACGGAGGCGGCCTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15759:596..4045+

>mRNA_Ecto-sp13_S_contig15759.4243.1 ID=mRNA_Ecto-sp13_S_contig15759.4243.1|Name=mRNA_Ecto-sp13_S_contig15759.4243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15759:596..4045+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCATCTCGAAAAGGGATGTGTCCCGCGAGGTGGAGTCTGTGTTCAC
GGCCCTCGCGAAAGCGCGCGTCCGCAAGGACATGGACCCAGAAGTTCTGA
AGTCATCTCAGTATTTGGACAGAAAGCTGGAGGCTCACCTGAAGTTGGAC
TGGTACAACGAGCAAGCGGTCAAGAGCGAGGCCCGTCGCCAGGCCAACCA
GCCGCCCGACTGGATCTGCCTTTTGCTCCAGAGGGACCGCGACGCTCGCC
GCGCGTGGCAGCTGCTGAAGGCGGTTCAAACCTCCGGCTGGGGGGGCTCC
TCGTCCAAGCCCAAGCCGGCCAAGGGGCAGCTTCAGAACCCCGAAAAGCT
GGAACTCGTCGACTCGGCGGCCCTTGCGGAGAGCAAGCTGGAACTCCAGG
AGGAGCGTGCCGCACAGGGGCTGAGCAAAGAGCCCACGCCCTCCTTCGAA
GTCGAAGAGGTCGACGACTGGGAGACCCTGGACGATCTTCCCGGGGGCGA
GCCGACGGAGGCGGCCTAA
back to top