mRNA_Ecto-sp13_S_contig15759.4242.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15759.4242.1
Unique NamemRNA_Ecto-sp13_S_contig15759.4242.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15759.4242.1 vs. uniprot
Match: A0A6H5KZK5_9PHAE (tRNA(His) guanylyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZK5_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.440e-28
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1
Query:   37 MANSRFQYVKKFELSDALLPDTYLVARLDGHRFTKFTAEHGFTKPNDERGLLLMTE 204
            MANSRFQYVKKFELSDALLPDTYLVARLDGHRFTKFTAEHGFTKPNDERGLLLMTE
Sbjct:    1 MANSRFQYVKKFELSDALLPDTYLVARLDGHRFTKFTAEHGFTKPNDERGLLLMTE 56          
BLAST of mRNA_Ecto-sp13_S_contig15759.4242.1 vs. uniprot
Match: D7FLT3_ECTSI (tRNA(His) guanylyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLT3_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.760e-28
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 1
Query:   37 MANSRFQYVKKFELSDALLPDTYLVARLDGHRFTKFTAEHGFTKPNDERGLLLMTE 204
            MANSRFQYVKKFELSDALLPDTYLVARLDGHRFTKFTAEHGFTKPNDERGLLLM E
Sbjct:    1 MANSRFQYVKKFELSDALLPDTYLVARLDGHRFTKFTAEHGFTKPNDERGLLLMAE 56          
BLAST of mRNA_Ecto-sp13_S_contig15759.4242.1 vs. uniprot
Match: A0A1Y2FDH3_PROLT (tRNA(His) guanylyltransferase (Fragment) n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FDH3_PROLT)

HSP 1 Score: 85.9 bits (211), Expect = 3.240e-18
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   37 MANSRFQYVKKFELSDALLPDTYLVARLDGHRFTKFTAEHGFTKPNDERGLLLMTEVRG--FKFFIIFQQASRNENNYSSINCAEVFGRVER 306
            MANSRF+YVK FE +DALLP+TY++ R+DGH F KF+A HGFTKPND   L LM +     F  F   Q A  + + YS +     F R ER
Sbjct:    1 MANSRFEYVKTFERNDALLPNTYIIVRIDGHAFHKFSAAHGFTKPNDLGALALMNKAAAAVFDAFPEIQLAYGDSDEYSFL-FPRSFNRYER 91          
BLAST of mRNA_Ecto-sp13_S_contig15759.4242.1 vs. uniprot
Match: UPI001B87859F (tRNAHis guanylyltransferase n=1 Tax=Suillus plorans TaxID=116603 RepID=UPI001B87859F)

HSP 1 Score: 82.4 bits (202), Expect = 5.840e-17
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 1
Query:   37 MANSRFQYVKKFELSDALLPDTYLVARLDGHRFTKFTAEHGFTKPNDERGLLLM 198
            MA +RF YV+ FEL D LLPDTYLV RLDGH F +F+ EHGF KPNDER L LM
Sbjct:    1 MAGTRFAYVRNFELPDPLLPDTYLVCRLDGHSFHRFSDEHGFAKPNDERALQLM 54          
BLAST of mRNA_Ecto-sp13_S_contig15759.4242.1 vs. uniprot
Match: A0A0D0AR10_9AGAM (tRNA(His) guanylyltransferase n=6 Tax=Suillus TaxID=5379 RepID=A0A0D0AR10_9AGAM)

HSP 1 Score: 83.2 bits (204), Expect = 6.170e-17
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   37 MANSRFQYVKKFELSDALLPDTYLVARLDGHRFTKFTAEHGFTKPNDERGLLLM 198
            MA ++F YV+ FEL D LLPDTYLV RLDGH F +F+ EHGFTKPNDER L LM
Sbjct:    1 MAGTKFAYVRNFELPDPLLPDTYLVCRLDGHSFHRFSDEHGFTKPNDERALQLM 54          
BLAST of mRNA_Ecto-sp13_S_contig15759.4242.1 vs. uniprot
Match: A0A0B7FAL6_THACB (tRNA(His) guanylyltransferase n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=A0A0B7FAL6_THACB)

HSP 1 Score: 77.8 bits (190), Expect = 1.270e-16
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   37 MANSRFQYVKKFELSDALLPDTYLVARLDGHRFTKFTAEHGFTKPNDERGLLLMTEV 207
            MAN+RFQYV+ FEL D LLP+T+LV R+DGH F KF+  H F KPNDER L LM + 
Sbjct:    1 MANTRFQYVRSFELPDPLLPNTHLVLRIDGHAFHKFSDAHEFQKPNDERALKLMDKA 57          
BLAST of mRNA_Ecto-sp13_S_contig15759.4242.1 vs. uniprot
Match: J9IJG2_9SPIT (tRNA(His) guanylyltransferase n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IJG2_9SPIT)

HSP 1 Score: 82.4 bits (202), Expect = 1.850e-16
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   37 MANSRFQYVKKFELSDALLPDTYLVARLDGHRFTKFTAEHGFTKPNDERGLLLMT----EVRGFKFFIIFQQASRNENNYSSINCAEVFGRVE 303
            MANS+F+YVKKFE S+ LLP+T++V R+DG  FT FT +H F KPND RGL LM     EV      II      +E ++     A+VF R E
Sbjct:    1 MANSKFEYVKKFEFSNTLLPNTFMVVRIDGRGFTNFTTQHNFEKPNDIRGLQLMNKCAKEVMKQFTEIIISYGDSDEYSFIFKKSAKVFNRRE 93          
BLAST of mRNA_Ecto-sp13_S_contig15759.4242.1 vs. uniprot
Match: X8JEW4_9AGAM (tRNA(His) guanylyltransferase n=6 Tax=Rhizoctonia solani TaxID=456999 RepID=X8JEW4_9AGAM)

HSP 1 Score: 81.3 bits (199), Expect = 2.920e-16
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   37 MANSRFQYVKKFELSDALLPDTYLVARLDGHRFTKFTAEHGFTKPNDERGLLLMTEV 207
            MAN+RFQYV+ FEL D LLP+T+LV R+DGH F KF+  HGF KPNDER L LM + 
Sbjct:    1 MANTRFQYVRSFELPDPLLPNTHLVLRIDGHAFHKFSDSHGFRKPNDERALKLMDKA 57          
BLAST of mRNA_Ecto-sp13_S_contig15759.4242.1 vs. uniprot
Match: A0A165EB57_9BASI (tRNA(His) guanylyltransferase n=1 Tax=Calocera cornea HHB12733 TaxID=1353952 RepID=A0A165EB57_9BASI)

HSP 1 Score: 80.5 bits (197), Expect = 3.050e-16
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   37 MANSRFQYVKKFELSDALLPDTYLVARLDGHRFTKFTAEHGFTKPNDERGLLLM 198
            MANSRF YV+ FEL D LLP TY+V R+DG  F +FT  HGF KPNDERGL LM
Sbjct:    1 MANSRFAYVRSFELPDPLLPSTYIVCRIDGRSFHRFTEAHGFDKPNDERGLRLM 54          
BLAST of mRNA_Ecto-sp13_S_contig15759.4242.1 vs. uniprot
Match: UPI001B85C5BD (Thg1 C terminal domain-containing protein n=1 Tax=Suillus paluster TaxID=48578 RepID=UPI001B85C5BD)

HSP 1 Score: 81.3 bits (199), Expect = 3.090e-16
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1
Query:   37 MANSRFQYVKKFELSDALLPDTYLVARLDGHRFTKFTAEHGFTKPNDERGLLLM 198
            MA ++F YV+ FEL D LLPDTYLV RLDGH F +F+ EHGF KPNDER L LM
Sbjct:    1 MAGTKFAYVRNFELPDPLLPDTYLVCRLDGHSFHRFSDEHGFAKPNDERALQLM 54          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15759.4242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZK5_9PHAE1.440e-28100.00tRNA(His) guanylyltransferase n=1 Tax=Ectocarpus s... [more]
D7FLT3_ECTSI2.760e-2898.21tRNA(His) guanylyltransferase n=1 Tax=Ectocarpus s... [more]
A0A1Y2FDH3_PROLT3.240e-1851.09tRNA(His) guanylyltransferase (Fragment) n=1 Tax=P... [more]
UPI001B87859F5.840e-1770.37tRNAHis guanylyltransferase n=1 Tax=Suillus ploran... [more]
A0A0D0AR10_9AGAM6.170e-1770.37tRNA(His) guanylyltransferase n=6 Tax=Suillus TaxI... [more]
A0A0B7FAL6_THACB1.270e-1663.16tRNA(His) guanylyltransferase n=1 Tax=Thanatephoru... [more]
J9IJG2_9SPIT1.850e-1648.39tRNA(His) guanylyltransferase n=1 Tax=Oxytricha tr... [more]
X8JEW4_9AGAM2.920e-1664.91tRNA(His) guanylyltransferase n=6 Tax=Rhizoctonia ... [more]
A0A165EB57_9BASI3.050e-1668.52tRNA(His) guanylyltransferase n=1 Tax=Calocera cor... [more]
UPI001B85C5BD3.090e-1668.52Thg1 C terminal domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15759contigEcto-sp13_S_contig15759:33..338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score115.5
Seed ortholog evalue1.4e-23
Seed eggNOG ortholog2880.D7FLT3
Preferred nameTHG1
Model size306
KEGG koko:K10761
Hectar predicted targeting categoryother localisation
GOsGO:0000966,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008192,GO:0008193,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070568,GO:0071704,GO:0090304,GO:0099116,GO:1901360
Exons1
EggNOG free text desc.tRNAHis guanylyltransferase
EggNOG OGsCOG4021@1,KOG2721@2759
EC2.7.7.79
Cds size306
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462832.7891068-CDS-Ecto-sp13_S_contig15759:32..3381681462832.7891068-CDS-Ecto-sp13_S_contig15759:32..338Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15759 33..338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15759.4242.1prot_Ecto-sp13_S_contig15759.4242.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15759 33..338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15759.4242.1

>prot_Ecto-sp13_S_contig15759.4242.1 ID=prot_Ecto-sp13_S_contig15759.4242.1|Name=mRNA_Ecto-sp13_S_contig15759.4242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
QAVNARSLQPLAMANSRFQYVKKFELSDALLPDTYLVARLDGHRFTKFTA
EHGFTKPNDERGLLLMTEVRGFKFFIIFQQASRNENNYSSINCAEVFGRV
ER
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mRNA from alignment at Ecto-sp13_S_contig15759:33..338-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15759.4242.1 ID=mRNA_Ecto-sp13_S_contig15759.4242.1|Name=mRNA_Ecto-sp13_S_contig15759.4242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15759:33..338- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCAGTGAACGCACGGTCCCTCCAGCCACTCGCTATGGCGAACAGCAG ATTCCAGTACGTCAAGAAGTTTGAGCTTTCGGACGCGTTGCTGCCCGACA CCTATCTGGTCGCCAGGCTGGACGGACACAGGTTCACGAAATTCACTGCG GAGCATGGGTTTACCAAGCCCAACGACGAGCGAGGACTACTGCTGATGAC TGAAGTGAGGGGATTCAAATTTTTTATTATCTTCCAGCAAGCTTCCAGGA ACGAAAACAATTACTCGAGTATTAATTGTGCCGAAGTTTTTGGGCGAGTG GAGCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15759:33..338-

>mRNA_Ecto-sp13_S_contig15759.4242.1 ID=mRNA_Ecto-sp13_S_contig15759.4242.1|Name=mRNA_Ecto-sp13_S_contig15759.4242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15759:33..338- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCAGTGAACGCACGGTCCCTCCAGCCACTCGCTATGGCGAACAGCAG
ATTCCAGTACGTCAAGAAGTTTGAGCTTTCGGACGCGTTGCTGCCCGACA
CCTATCTGGTCGCCAGGCTGGACGGACACAGGTTCACGAAATTCACTGCG
GAGCATGGGTTTACCAAGCCCAACGACGAGCGAGGACTACTGCTGATGAC
TGAAGTGAGGGGATTCAAATTTTTTATTATCTTCCAGCAAGCTTCCAGGA
ACGAAAACAATTACTCGAGTATTAATTGTGCCGAAGTTTTTGGGCGAGTG
GAGCGA
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