mRNA_Ecto-sp13_S_contig15751.4240.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15751.4240.1
Unique NamemRNA_Ecto-sp13_S_contig15751.4240.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15751.4240.1 vs. uniprot
Match: A0A0F8EBA6_9EURY (Uncharacterized protein n=2 Tax=Methanosarcina sp. 2.H.A.1B.4 TaxID=1483600 RepID=A0A0F8EBA6_9EURY)

HSP 1 Score: 65.1 bits (157), Expect = 2.480e-12
Identity = 31/64 (48.44%), Postives = 45/64 (70.31%), Query Frame = 2 
Query:    5 ETVLPPDHPQMAASLNNRAGLLTEQEKYEAAVPLL*RALSIRTSRLGDSHPYTVSVQSNLEALR 196
            E VL P+HP +A + NN AGL    EKY+ A+PLL R+L I  S+LG +HPY  +++ N++AL+
Sbjct:    3 EKVLGPEHPSVATTPNNLAGLYYRIEKYDEALPLLERSLRIFKSKLGPAHPYLKTIEQNIQALK 66
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BLAST of mRNA_Ecto-sp13_S_contig15751.4240.1 vs. uniprot
Match: A0A1B7VCZ1_9NOST (Uncharacterized protein (Fragment) n=1 Tax=Anabaena sp. LE011-02 TaxID=1710892 RepID=A0A1B7VCZ1_9NOST)

HSP 1 Score: 62.8 bits (151), Expect = 1.790e-11
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 2 
Query:    5 ETVLPPDHPQMAASLNNRAGLLTEQEKYEAAVPLL*RALSIRTSRLGDSHPYTVSVQSNLEALR 196
            + +L  DHP +A+SLNN AGL   Q KY  A PL  +AL+I   RLG  HP+T+ V+ NLE LR
Sbjct:    2 QKLLGDDHPDVASSLNNLAGLYYSQGKYNEAEPLYQQALNIFEQRLGVDHPHTIIVRGNLEHLR 65
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BLAST of mRNA_Ecto-sp13_S_contig15751.4240.1 vs. uniprot
Match: A0A1U7GY10_9NOSO (Uncharacterized protein n=2 Tax=Nostoc TaxID=1177 RepID=A0A1U7GY10_9NOSO)

HSP 1 Score: 49.7 bits (117), Expect = 6.600e-6
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 2 
Query:   23 DHPQMAASLNNRAGLLTEQEKYEAAVPLL*RALSIRTSRLGDSHPYTVSVQSNLEALR 196
            DHP +A SLNN AGL   Q +Y  A PL   AL++    LG +HP T +++ NL  L+
Sbjct:   11 DHPDVATSLNNLAGLYYSQGRYSDAEPLYSDALAMCQRVLGVNHPTTATIRENLAILQ 68
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BLAST of mRNA_Ecto-sp13_S_contig15751.4240.1 vs. uniprot
Match: D7FGQ2_ECTSI (Tetratricopeptide repeat family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGQ2_ECTSI)

HSP 1 Score: 47.0 bits (110), Expect = 5.340e-5
Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 2 
Query:   65 LLTEQEKYEAAVPLL*RALSIRTSRLGDSHPYTVSVQSNLEALRAIFRAQL 217
            L   QE Y  A+PL  RALSIRT +LG SHP T   ++ L+ +R   R +L
Sbjct:   25 LTRPQEHYVEAIPLFERALSIRTRKLGGSHPDTAGTRNGLDVVRRKARLEL 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15751.4240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0F8EBA6_9EURY2.480e-1248.44Uncharacterized protein n=2 Tax=Methanosarcina sp.... [more]
A0A1B7VCZ1_9NOST1.790e-1151.56Uncharacterized protein (Fragment) n=1 Tax=Anabaen... [more]
A0A1U7GY10_9NOSO6.600e-644.83Uncharacterized protein n=2 Tax=Nostoc TaxID=1177 ... [more]
D7FGQ2_ECTSI5.340e-547.06Tetratricopeptide repeat family n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15751contigEcto-sp13_S_contig15751:1119..2047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size232
Hectar predicted targeting categoryother localisation
Exons2
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462832.6907482-CDS-Ecto-sp13_S_contig15751:1118..11971681462832.6907482-CDS-Ecto-sp13_S_contig15751:1118..1197Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15751 1119..1197 +
1681462832.701653-CDS-Ecto-sp13_S_contig15751:1896..20451681462832.701653-CDS-Ecto-sp13_S_contig15751:1896..2045Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15751 1897..2045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15751.4240.1prot_Ecto-sp13_S_contig15751.4240.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15751 1119..2045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15751.4240.1

>prot_Ecto-sp13_S_contig15751.4240.1 ID=prot_Ecto-sp13_S_contig15751.4240.1|Name=mRNA_Ecto-sp13_S_contig15751.4240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
RRDSAPARPPTDGCIAQQPGGVVDGAGEVRGGRSTFVEGPLNPYKQARRQ
PPVHGQRPEQPGSFASNISCTTGKSL
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mRNA from alignment at Ecto-sp13_S_contig15751:1119..2047+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15751.4240.1 ID=mRNA_Ecto-sp13_S_contig15751.4240.1|Name=mRNA_Ecto-sp13_S_contig15751.4240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=929bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15751:1119..2047+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAAGAGACAGTGCTCCCGCCAGACCACCCACAGATGGCTGCATCGCTCA
ACAACCGGGCGGGGTTGTTGACGGAGCAGGTGAGAGCCATGGGAAGATTC
TCCGAAGGTTCTTGTGGTATTCAATTGATGTTGTACATAGTGCCCAACAA
CCGGGCGGCAGGTGCAAGCCAAACGATGCTTCTAGATGCTTCCAAAAGAG
AATGTTTCTCCGCATTTCTAGATCCGACTTTTACGGAAATACGACTTTGC
CATGCGATCATTCCAGGGGAAGCATGCTGAGGCTGAGCCACTGCATGGGC
GGGCCACCGAAATCTGGGAGAAAGCGTTAGGTGCTGACCACCTAACAGTT
GCCACCGTGCTCAGCAATCGGGCGGGGTTGTTGTGCGCCCAGGTGAGACC
CTGCGGAAATTTGAAGACTTAGTTTTATTCTGTACACCAGTGGACGCTAT
GGTACTCAACATCCAATTGTTGCTAGACAACCAGGTAGTGGAGCTGGCTG
TTTCGGCGTTAAATTGCTGTTAGTTGCGATAGTCAGCGGGCTTGGTGAGA
GCGATGGTGAGGTGCAGCAGCTGCCAGGATGTTGGACCACACAATCGCGA
GGCCCTTTTCGTGTTGAATTCGTCAGGCTGGTTGGACCAAATGTGGCCCA
CTGCCGGCGTGTACTAAATATTGTACTGGTGGATTCAAGGTCTGAGTGCC
TTAACCCCGAAGTCTCGATATGTACGGTGTGCTCACTGGAAAATTCATTT
GGTTCCCTGCAATCTAACACGTTCACAGGAGAAGTACGAGGCGGCCGTTC
CACTTTTGTAGAGGGCCCTCTCAATCCGTACAAGCAGGCTCGGCGACAGC
CACCCGTACACGGTCAGCGTCCAGAGCAACCTGGAAGCTTTGCGAGCAAT
ATTTCGTGCACAACTGGCAAGTCTTTAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15751:1119..2047+

>mRNA_Ecto-sp13_S_contig15751.4240.1 ID=mRNA_Ecto-sp13_S_contig15751.4240.1|Name=mRNA_Ecto-sp13_S_contig15751.4240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15751:1119..2047+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAAGAGACAGTGCTCCCGCCAGACCACCCACAGATGGCTGCATCGCTCA
ACAACCGGGCGGGGTTGTTGACGGAGCAGGAGAAGTACGAGGCGGCCGTT
CCACTTTTGTAGAGGGCCCTCTCAATCCGTACAAGCAGGCTCGGCGACAG
CCACCCGTACACGGTCAGCGTCCAGAGCAACCTGGAAGCTTTGCGAGCAA
TATTTCGTGCACAACTGGCAAGTCTTTA
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