prot_Ecto-sp13_S_contig1575.4239.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1575.4239.1
Unique Nameprot_Ecto-sp13_S_contig1575.4239.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length349
Homology
BLAST of mRNA_Ecto-sp13_S_contig1575.4239.1 vs. uniprot
Match: A0A6H5KWW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW8_9PHAE)

HSP 1 Score: 564 bits (1453), Expect = 6.790e-201
Identity = 323/350 (92.29%), Postives = 328/350 (93.71%), Query Frame = 0
Query:    1 MSVSARWQRNAVRLVALVLFFESALSFAPPPVQQQPAQSRSSPLL-PATAALQRRSSSNGSSFWPARVAVAGCRYRQRRRGAASQLAPRLAMSSSAGRNGSRPERG-GGATNIASAAGGAFDVADEPGDAQSSKAQTQVPPKTGVTQTGQASRRXXXXXXXDSDFLFEQKLESVRAAVLCGSVGATSRLLAVGAGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTMAAGEFVGVLGRGGGILEALAPVLLPAAPFLPRAAADLFLYSAARLAIDRALDEGVIKPFP 348
            M VSARWQRNAVR VA +LFFESALSFAPPPVQQQPA S SSPLL PATA LQRRSSSNGSS WPAR AVAG R+RQR RGAASQ  PRLAMSSSAGRNG+ PERG G A NIASAAGGAF VADEPGDAQSSKAQTQVPPKTG TQTGQASRRXXXXXXXDSDFLFEQKLESVRAAVLCGSVGATSRLLAVGAG LLPGGL REALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLT+AAGEFVGVLGRGGGILEALA VLLPAAPFLPRAAADLFLY+AARLAIDRALDEGVIKPFP
Sbjct:    1 MFVSARWQRNAVRFVASILFFESALSFAPPPVQQQPALSWSSPLLLPATATLQRRSSSNGSSLWPARAAVAGYRHRQRHRGAASQQTPRLAMSSSAGRNGAAPERGDGAAANIASAAGGAFGVADEPGDAQSSKAQTQVPPKTGATQTGQASRRXXXXXXXDSDFLFEQKLESVRAAVLCGSVGATSRLLAVGAGGLLPGGLFREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVGVLGRGGGILEALAAVLLPAAPFLPRAAADLFLYTAARLAIDRALDEGVIKPFP 350          
BLAST of mRNA_Ecto-sp13_S_contig1575.4239.1 vs. uniprot
Match: D8LP08_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP08_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 8.750e-133
Identity = 218/244 (89.34%), Postives = 221/244 (90.57%), Query Frame = 0
Query:   91 MSSSAGRNGSRPERGGGATNIASAAGGAFDVADEPGDAQSSKAQTQVPPKTGVTQTGQASRRXXXXXXXDSDFLFEQKLESVRAAVLCGSVGATSRLLAVGAGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTMAAGEFVGVLGRGGGILEALAPVLLPAAPFLPRAAADLFLYSAARLA 334
            MSSSAGRNG+ PERG GA N ASAAGGA   ADEPGDAQSS AQTQVPPKTG TQTGQASR        DSDFLFEQKLESVRAAVLCGSVGA SRLLAVGAGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLT+AAGEFV VL RGGGILEALA VLLPAAPFLPRAAADLFLYS+  LA
Sbjct:    1 MSSSAGRNGAAPERGDGAANSASAAGGAVXXADEPGDAQSSIAQTQVPPKTGATQTGQASRCRRQQHHHDSDFLFEQKLESVRAAVLCGSVGAASRLLAVGAGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVRVLWRGGGILEALAAVLLPAAPFLPRAAADLFLYSSPPLA 244          
BLAST of mRNA_Ecto-sp13_S_contig1575.4239.1 vs. uniprot
Match: A0A7S2XV80_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV80_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.930e-6
Identity = 51/180 (28.33%), Postives = 83/180 (46.11%), Query Frame = 0
Query:  167 QKLESVRAAVLCGSVGATSRLLAVGAGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTMAAGEFVGVLGRGGGILEALAPVLLPAAPFLPRAAADLFLYSAARLAIDRALDEGVIKP 346
            Q++ES+++AV+ G+    +RL         P  ++ +         S ++  + +   +GALFGL YRYV+RSD ++                F+   LG G  AAFALTS L  +E  L+    +F+ +  +  G    L   L+ +A      A     +  A++ ID  LD G+I P
Sbjct:   93 QRIESLKSAVVGGAAVGGTRLALTVLDGTKPWNMVNDVDTL-----SRVIVEVGSATLEGALFGLLYRYVIRSDMKKPKDELV----------FSADQLGGGAAAAFALTSFLPANEERLSRILSDFLSLALQLDGKQADLGTTLMESAYTSGSFALSFIGFLVAKITIDSCLDAGIISP 257          
BLAST of mRNA_Ecto-sp13_S_contig1575.4239.1 vs. uniprot
Match: A0A7S3URH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URH4_HETAK)

HSP 1 Score: 57.0 bits (136), Expect = 3.630e-6
Identity = 64/173 (36.99%), Postives = 77/173 (44.51%), Query Frame = 0
Query:  192 AGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTMAAGEFVGVLG----------RGGGILEALAPVL----------LPAAPFLPRAAADLFLYSAARLAIDRALDEGVI 344
            A AL P  LL   +A P  A + L+  L  G A+GALFGL YRYVVR D  +         P P + GF+V  LGDG V++FALTS L  ++  L   A  FV  L            GGG L A   V                 L  AA     +   R A+DRAL  G I
Sbjct:    7 AAALNPSLLL---VARPASAAADLV-ALGGGAAEGALFGLLYRYVVRGDLTR---------PDPGL-GFSVKQLGDGVVSSFALTSVLAHNQENLVKVAEVFVLSLPTAISDLTSVPEGGGALAAAGDVARALXXXXXXXXXXXXLLRDAAVAWLSFGLCREALDRALLSGAI 165          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1575.4239.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KWW8_9PHAE6.790e-20192.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP08_ECTSI8.750e-13389.34Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S2XV80_9STRA1.930e-628.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3URH4_HETAK3.630e-636.99Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..214
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 237..348
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..21
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 215..236
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.799
NoneNo IPR availableTMHMMTMhelixcoord: 211..233
NoneNo IPR availableTMHMMTMhelixcoord: 174..196

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1575contigEcto-sp13_S_contig1575:11880..16428 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1575.4239.1mRNA_Ecto-sp13_S_contig1575.4239.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1575 11880..16555 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1575.4239.1 ID=prot_Ecto-sp13_S_contig1575.4239.1|Name=mRNA_Ecto-sp13_S_contig1575.4239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=349bp
MSVSARWQRNAVRLVALVLFFESALSFAPPPVQQQPAQSRSSPLLPATAA
LQRRSSSNGSSFWPARVAVAGCRYRQRRRGAASQLAPRLAMSSSAGRNGS
RPERGGGATNIASAAGGAFDVADEPGDAQSSKAQTQVPPKTGVTQTGQAS
RRRRQQQHHDSDFLFEQKLESVRAAVLCGSVGATSRLLAVGAGALLPGGL
LREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTG
EPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTMAAGEFVGVLGRG
GGILEALAPVLLPAAPFLPRAAADLFLYSAARLAIDRALDEGVIKPFP*
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