mRNA_Ecto-sp13_S_contig1575.4239.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1575.4239.1 vs. uniprot
Match: A0A6H5KWW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW8_9PHAE) HSP 1 Score: 563 bits (1451), Expect = 7.100e-200 Identity = 323/350 (92.29%), Postives = 328/350 (93.71%), Query Frame = 1
Query: 1 MSVSARWQRNAVRLVALVLFFESALSFAPPPVQQQPAQSRSSPLL-PATAALQRRSSSNGSSFWPARVAVAGCRYRQRRRGAASQLAPRLAMSSSAGRNGSRPERG-GGATNIASAAGGAFDVADEPGDAQSSKAQTQVPPKTGVTQTGQASRRXXXXXXXDSDFLFEQKLESVRAAVLCGSVGATSRLLAVGAGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTMAAGEFVGVLGRGGGILEALAPVLLPAAPFLPRAAADLFLYSAARLAIDRALDEGVIKPFP 1044
M VSARWQRNAVR VA +LFFESALSFAPPPVQQQPA S SSPLL PATA LQRRSSSNGSS WPAR AVAG R+RQR RGAASQ PRLAMSSSAGRNG+ PERG G A NIASAAGGAF VADEPGDAQSSKAQTQVPPKTG TQTGQASRRXXXXXXXDSDFLFEQKLESVRAAVLCGSVGATSRLLAVGAG LLPGGL REALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLT+AAGEFVGVLGRGGGILEALA VLLPAAPFLPRAAADLFLY+AARLAIDRALDEGVIKPFP
Sbjct: 1 MFVSARWQRNAVRFVASILFFESALSFAPPPVQQQPALSWSSPLLLPATATLQRRSSSNGSSLWPARAAVAGYRHRQRHRGAASQQTPRLAMSSSAGRNGAAPERGDGAAANIASAAGGAFGVADEPGDAQSSKAQTQVPPKTGATQTGQASRRXXXXXXXDSDFLFEQKLESVRAAVLCGSVGATSRLLAVGAGGLLPGGLFREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVGVLGRGGGILEALAAVLLPAAPFLPRAAADLFLYTAARLAIDRALDEGVIKPFP 350
BLAST of mRNA_Ecto-sp13_S_contig1575.4239.1 vs. uniprot
Match: D8LP08_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP08_ECTSI) HSP 1 Score: 388 bits (996), Expect = 4.080e-132 Identity = 218/244 (89.34%), Postives = 221/244 (90.57%), Query Frame = 1
Query: 271 MSSSAGRNGSRPERGGGATNIASAAGGAFDVADEPGDAQSSKAQTQVPPKTGVTQTGQASRRXXXXXXXDSDFLFEQKLESVRAAVLCGSVGATSRLLAVGAGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTMAAGEFVGVLGRGGGILEALAPVLLPAAPFLPRAAADLFLYSAARLA 1002
MSSSAGRNG+ PERG GA N ASAAGGA ADEPGDAQSS AQTQVPPKTG TQTGQASR DSDFLFEQKLESVRAAVLCGSVGA SRLLAVGAGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLT+AAGEFV VL RGGGILEALA VLLPAAPFLPRAAADLFLYS+ LA
Sbjct: 1 MSSSAGRNGAAPERGDGAANSASAAGGAVXXADEPGDAQSSIAQTQVPPKTGATQTGQASRCRRQQHHHDSDFLFEQKLESVRAAVLCGSVGAASRLLAVGAGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVRVLWRGGGILEALAAVLLPAAPFLPRAAADLFLYSSPPLA 244
BLAST of mRNA_Ecto-sp13_S_contig1575.4239.1 vs. uniprot
Match: A0A7S2XV80_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV80_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 4.340e-6 Identity = 51/180 (28.33%), Postives = 83/180 (46.11%), Query Frame = 1
Query: 499 QKLESVRAAVLCGSVGATSRLLAVGAGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTMAAGEFVGVLGRGGGILEALAPVLLPAAPFLPRAAADLFLYSAARLAIDRALDEGVIKP 1038
Q++ES+++AV+ G+ +RL P ++ + S ++ + + +GALFGL YRYV+RSD ++ F+ LG G AAFALTS L +E L+ +F+ + + G L L+ +A A + A++ ID LD G+I P
Sbjct: 93 QRIESLKSAVVGGAAVGGTRLALTVLDGTKPWNMVNDVDTL-----SRVIVEVGSATLEGALFGLLYRYVIRSDMKKPKDELV----------FSADQLGGGAAAAFALTSFLPANEERLSRILSDFLSLALQLDGKQADLGTTLMESAYTSGSFALSFIGFLVAKITIDSCLDAGIISP 257
BLAST of mRNA_Ecto-sp13_S_contig1575.4239.1 vs. uniprot
Match: A0A7S3URH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URH4_HETAK) HSP 1 Score: 56.6 bits (135), Expect = 5.850e-6 Identity = 64/173 (36.99%), Postives = 77/173 (44.51%), Query Frame = 1
Query: 574 AGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTMAAGEFVGVLG----------RGGGILEALAPVL----------LPAAPFLPRAAADLFLYSAARLAIDRALDEGVI 1032
A AL P LL +A P A + L+ L G A+GALFGL YRYVVR D + P P + GF+V LGDG V++FALTS L ++ L A FV L GGG L A V L AA + R A+DRAL G I
Sbjct: 7 AAALNPSLLL---VARPASAAADLV-ALGGGAAEGALFGLLYRYVVRGDLTR---------PDPGL-GFSVKQLGDGVVSSFALTSVLAHNQENLVKVAEVFVLSLPTAISDLTSVPEGGGALAAAGDVARALXXXXXXXXXXXXLLRDAAVAWLSFGLCREALDRALLSGAI 165
BLAST of mRNA_Ecto-sp13_S_contig1575.4239.1 vs. uniprot
Match: A0A830H2U7_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H2U7_9CHLO) HSP 1 Score: 57.8 bits (138), Expect = 7.060e-6 Identity = 61/183 (33.33%), Postives = 78/183 (42.62%), Query Frame = 1
Query: 496 EQKLESVRAAVLCGSVGATSRLLAVGAGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTMAAGEFVGVLGRGGGILEALAPVLLPAAPFLPRAAADLFLYSAARLAIDRALDEGVIKPFP 1044
EQ++ES +AA + G+ G L A GA GGL G +LL G+ + ALFGLTYRY +R D S L G VAAFAL A G L+++ + G G G LE L L L+ A R A+DRA+ G +KPFP
Sbjct: 121 EQRIESAKAAAIAGAAGGLVALPAYAFGA---GGL-----------GPALLLGVGSDALTAALFGLTYRYALRRDVNNS-------------------MLQSGVVAAFALARASGA----LSVSLADGTGASGALSGTLEGL-----------------LVLFVAQR-ALDRAIGAGFVKPFP 248
BLAST of mRNA_Ecto-sp13_S_contig1575.4239.1 vs. uniprot
Match: K9W4I0_9CYAN (Uncharacterized protein n=1 Tax=Crinalium epipsammum PCC 9333 TaxID=1173022 RepID=K9W4I0_9CYAN) HSP 1 Score: 54.7 bits (130), Expect = 1.990e-5 Identity = 57/189 (30.16%), Postives = 78/189 (41.27%), Query Frame = 1
Query: 481 SDFLFEQKLESVRAAVLCGSVGATSRLLAVGAGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTM--AAGEFVGVLGRGGGILEALAPVLLPAAPFLPRAAADLFLYSAARLAIDRALDEGVIKPF 1041
S F ++LES++A +L G V A +A A +LL + + A +LL A G LFG+TYRY++RSD T HL DG V AF L L Q + L A F G+LG +E + L++ AR +D A+ G IKPF
Sbjct: 5 SQFNPTERLESIKAGILAGIVVALVYAIATLANSLLLAEVFEALVGLQSKADVNLLVSGAIASLSGCLFGITYRYIIRSD--------------------TNSHLNDGAVLAFGLVRGLAQVDVGLKFPDAVWSF-GILG-----IE------------------SILLFAIARFTLDLAMQLGWIKPF 149 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1575.4239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1575.4239.1 >prot_Ecto-sp13_S_contig1575.4239.1 ID=prot_Ecto-sp13_S_contig1575.4239.1|Name=mRNA_Ecto-sp13_S_contig1575.4239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=349bp MSVSARWQRNAVRLVALVLFFESALSFAPPPVQQQPAQSRSSPLLPATAAback to top mRNA from alignment at Ecto-sp13_S_contig1575:11880..16555+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1575.4239.1 ID=mRNA_Ecto-sp13_S_contig1575.4239.1|Name=mRNA_Ecto-sp13_S_contig1575.4239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4676bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1575:11880..16555+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1575:11880..16555+ >mRNA_Ecto-sp13_S_contig1575.4239.1 ID=mRNA_Ecto-sp13_S_contig1575.4239.1|Name=mRNA_Ecto-sp13_S_contig1575.4239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1047bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1575:11880..16555+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |