mRNA_Ecto-sp13_S_contig15748.4237.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15748.4237.1
Unique NamemRNA_Ecto-sp13_S_contig15748.4237.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15748.4237.1 vs. uniprot
Match: D8LD12_ECTSI (Argininosuccinate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD12_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 1.050e-99
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 1 
Query:    4 QGRGDLLAYAAEQGIPVSSTPKASYSIDENLYHTSYESGILEDPMTAPPPEMFKMTVDPLKAPDKVESLRIEFAKGIPVKVTNKTDGTVKDKPLELFCYLNEVAGRNGIGRIDIVENRFVGIKSRGIYETPAGTLLREVHLDLEGLCLDKEV 459
            +GRGDLLAYA EQGIPVSSTPKASYSIDENLYHTSYESGILEDPMTAPPPEMFKMTVDPLKAPDKVESLRIEFAKGIPVKVTNKTDGTVK+KPLELFCYLNEVAGRNGIGRIDIVENRFVGIKSRGIYETPAGTLLREVHLDLEGLCLDKEV
Sbjct:  167 KGRGDLLAYATEQGIPVSSTPKASYSIDENLYHTSYESGILEDPMTAPPPEMFKMTVDPLKAPDKVESLRIEFAKGIPVKVTNKTDGTVKEKPLELFCYLNEVAGRNGIGRIDIVENRFVGIKSRGIYETPAGTLLREVHLDLEGLCLDKEV 318
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BLAST of mRNA_Ecto-sp13_S_contig15748.4237.1 vs. uniprot
Match: A0A6H5KXG1_9PHAE (Argininosuccinate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG1_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 5.220e-92
Identity = 151/199 (75.88%), Postives = 152/199 (76.38%), Query Frame = 1 
Query:    4 QGRGDLLAYAAEQGIPVSSTPKASYSIDENLYHTSYESGILEDPMTAPPPEMFKMTVDPLKAPDKVESLRIEFAKGIPVKVTNKTDGTVKDKPLELFCYLNEVAGRNGIGRIDIVENR-----------------------------------------------FVGIKSRGIYETPAGTLLREVHLDLEGLCLDKEV 459
            +GRGDLLAYAAEQGIPVSSTPKASYSIDENLYHTSYESGILEDPMTAPPPEMFKMTVDPLKAPDKVESLRIEFAKGIPVKVTNKTDGTVKDKPLELFCYLNEVAGRNGIGRIDIVENR                                               FVGIKSRGIYETPAGTLLREVHLDLEGLCLDKEV
Sbjct:  151 KGRGDLLAYAAEQGIPVSSTPKASYSIDENLYHTSYESGILEDPMTAPPPEMFKMTVDPLKAPDKVESLRIEFAKGIPVKVTNKTDGTVKDKPLELFCYLNEVAGRNGIGRIDIVENRDPSATTVHLWYCIVVNMPASGYSNGRLDMSACRRSLLLPLFIFSCSRFVGIKSRGIYETPAGTLLREVHLDLEGLCLDKEV 349
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BLAST of mRNA_Ecto-sp13_S_contig15748.4237.1 vs. uniprot
Match: A0A7S2UY94_9STRA (Argininosuccinate synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY94_9STRA)

HSP 1 Score: 254 bits (650), Expect = 5.160e-82
Identity = 121/153 (79.08%), Postives = 136/153 (88.89%), Query Frame = 1 
Query:    4 QGRGDLLAYAAEQGIPVSSTPKASYSIDENLYHTSYESGILEDPMTAPPPEMFKMTVDPLKAPDKVESLRIEFAKGIPVKVTNKTDGTVKDKPLELFCYLNEVAGRNGIGRIDIVENRFVGIKSRGIYETPAGTLLREVHLDLEGLCLDKEVG 462
            +GR DLLAYAAEQGIPV +TPKA YS+DENL+HTS+ESG+LEDPM AP  EMFKMTVDP  APD+ E+LRIEF  G+PVKVT+K D T K  PLELFCYLNEVAGRNG+GRIDIVENRFVGIKSRG+YETPAGT+LRE HLDLEG+CLD+EVG
Sbjct:   98 KGRQDLLAYAAEQGIPVDATPKAPYSVDENLFHTSFESGMLEDPMVAPMKEMFKMTVDPKDAPDQAEALRIEFKAGVPVKVTHKADNTEKTDPLELFCYLNEVAGRNGVGRIDIVENRFVGIKSRGVYETPAGTVLREAHLDLEGMCLDREVG 250
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BLAST of mRNA_Ecto-sp13_S_contig15748.4237.1 vs. uniprot
Match: A0A836CG55_9STRA (Argininosuccinate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG55_9STRA)

HSP 1 Score: 236 bits (602), Expect = 5.880e-74
Identity = 119/152 (78.29%), Postives = 127/152 (83.55%), Query Frame = 1 
Query:    4 QGRGDLLAYAAEQGIPVSSTPKASYSIDENLYHTSYESGILEDPMTAPPPEMFKMTVDPLKAPDKVESLRIEFAKGIPVKVTNKTDGTVKDKPLELFCYLNEVAGRNGIGRIDIVENRFVGIKSRGIYETPAGTLLREVHLDLEGLCLDKEV 459
            +GR DLLAYAA+  IPVSSTPKA+YSIDENLYHTSYESG+LEDP  A P  MFKMTV P  APD  E LRIEF  GIPVKVTN TD T K   LELF YLN+VAGRNG+GRIDIVENRFVGIKSRG+YETP GTLLRE HLDLEGLCLD+EV
Sbjct:  163 KGRSDLLAYAAQHNIPVSSTPKANYSIDENLYHTSYESGMLEDPACAYPESMFKMTVSPEAAPDTPEILRIEFDTGIPVKVTNLTDKTEKTGALELFLYLNQVAGRNGVGRIDIVENRFVGIKSRGVYETPGGTLLREAHLDLEGLCLDREV 314
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BLAST of mRNA_Ecto-sp13_S_contig15748.4237.1 vs. uniprot
Match: A0A7R9YC46_9STRA (Argininosuccinate synthase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC46_9STRA)

HSP 1 Score: 235 bits (600), Expect = 1.340e-73
Identity = 112/152 (73.68%), Postives = 128/152 (84.21%), Query Frame = 1 
Query:    4 QGRGDLLAYAAEQGIPVSSTPKASYSIDENLYHTSYESGILEDPMTAPPPEMFKMTVDPLKAPDKVESLRIEFAKGIPVKVTNKTDGTVKDKPLELFCYLNEVAGRNGIGRIDIVENRFVGIKSRGIYETPAGTLLREVHLDLEGLCLDKEV 459
            +GR DLLAYAAE GIPV +TPKA YS+DENLYHTSYESG+LEDPMT P PEMFKMT DP  APD  ESL IEF  G+PVKVTNK    V  +PL LF YLNE+AG++G+GR+DIVENRFVGIKSRG+YETP GT+LRE HLDLEG+C+D+EV
Sbjct:  160 KGRQDLLAYAAEHGIPVDATPKAPYSVDENLYHTSYESGMLEDPMTPPTPEMFKMTRDPKDAPDTAESLCIEFLDGVPVKVTNKNTEVVHTEPLPLFLYLNEMAGKHGVGRVDIVENRFVGIKSRGVYETPGGTILREAHLDLEGMCVDREV 311
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BLAST of mRNA_Ecto-sp13_S_contig15748.4237.1 vs. uniprot
Match: A0A7S2SUU2_9STRA (Argininosuccinate synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUU2_9STRA)

HSP 1 Score: 235 bits (599), Expect = 3.560e-73
Identity = 116/152 (76.32%), Postives = 129/152 (84.87%), Query Frame = 1 
Query:    4 QGRGDLLAYAAEQGIPVSSTPKASYSIDENLYHTSYESGILEDPMTAPPPEMFKMTVDPLKAPDKVESLRIEFAKGIPVKVTNKTDGTVKDKPLELFCYLNEVAGRNGIGRIDIVENRFVGIKSRGIYETPAGTLLREVHLDLEGLCLDKEV 459
            +GR DLL YAA+  IPV +TPKA YS+DENLYHTS+ESG+LEDPMTAP  EMFKMTVDP  APD    L IEF KGIPVKVTNKTDGT K   LELF YLNEVAG+NG+GR+DIVENRFVGIKSRG+YETPAGT+LRE HLDLEG+ LD+EV
Sbjct:  188 KGRTDLLEYAAKHNIPVDATPKAPYSVDENLYHTSFESGMLEDPMTAPLKEMFKMTVDPKDAPDVGTLLSIEFDKGIPVKVTNKTDGTEKTDSLELFLYLNEVAGKNGVGRLDIVENRFVGIKSRGVYETPAGTVLREAHLDLEGMTLDREV 339
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BLAST of mRNA_Ecto-sp13_S_contig15748.4237.1 vs. uniprot
Match: A0A7S1UIZ0_9STRA (Argininosuccinate synthase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIZ0_9STRA)

HSP 1 Score: 232 bits (591), Expect = 3.930e-72
Identity = 112/152 (73.68%), Postives = 126/152 (82.89%), Query Frame = 1 
Query:    4 QGRGDLLAYAAEQGIPVSSTPKASYSIDENLYHTSYESGILEDPMTAPPPEMFKMTVDPLKAPDKVESLRIEFAKGIPVKVTNKTDGTVKDKPLELFCYLNEVAGRNGIGRIDIVENRFVGIKSRGIYETPAGTLLREVHLDLEGLCLDKEV 459
            +GR DLL YAAE GIPV +TPKA YS+DENLYHTSYESG+LED M  P PEMFKMTVDP  APD  E L IEF KG+PVKVTNKT+   +  PL LF YLNE+AG++GIGRIDI ENRFVGIKSRG+YETP GT+LRE HLDLEGLC+D+EV
Sbjct:  165 KGRTDLLNYAAEHGIPVDATPKAPYSVDENLYHTSYESGMLEDTMVGPLPEMFKMTVDPKDAPDAAEELCIEFVKGVPVKVTNKTNPKEETSPLPLFLYLNEMAGKHGIGRIDICENRFVGIKSRGVYETPGGTILREAHLDLEGLCMDREV 316
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BLAST of mRNA_Ecto-sp13_S_contig15748.4237.1 vs. uniprot
Match: W7U626_9STRA (Argininosuccinate synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U626_9STRA)

HSP 1 Score: 228 bits (581), Expect = 6.290e-71
Identity = 109/152 (71.71%), Postives = 127/152 (83.55%), Query Frame = 1 
Query:    4 QGRGDLLAYAAEQGIPVSSTPKASYSIDENLYHTSYESGILEDPMTAPPPEMFKMTVDPLKAPDKVESLRIEFAKGIPVKVTNKTDGTVKDKPLELFCYLNEVAGRNGIGRIDIVENRFVGIKSRGIYETPAGTLLREVHLDLEGLCLDKEV 459
            +GR DLL YAA   I V +T KASYS+DENLYHTSYESG+LEDPM  P  EMFKMTVDP  APDK E +RI+F +G+PVKVTN  DGTVK +PLELF YLNE+AG++G+GRIDIVENRFVGIKSRG+YETP G +LR  H+DLEGLC+D+EV
Sbjct:  156 KGRQDLLDYAAAHNIQVEATKKASYSVDENLYHTSYESGMLEDPMVPPLKEMFKMTVDPEDAPDKAEKVRIDFEEGVPVKVTNHDDGTVKTEPLELFLYLNELAGKHGVGRIDIVENRFVGIKSRGVYETPGGQILRVAHMDLEGLCVDREV 307
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BLAST of mRNA_Ecto-sp13_S_contig15748.4237.1 vs. uniprot
Match: A0A6V2AT77_9STRA (Argininosuccinate synthase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2AT77_9STRA)

HSP 1 Score: 226 bits (577), Expect = 2.870e-70
Identity = 106/152 (69.74%), Postives = 127/152 (83.55%), Query Frame = 1 
Query:    4 QGRGDLLAYAAEQGIPVSSTPKASYSIDENLYHTSYESGILEDPMTAPPPEMFKMTVDPLKAPDKVESLRIEFAKGIPVKVTNKTDGTVKDKPLELFCYLNEVAGRNGIGRIDIVENRFVGIKSRGIYETPAGTLLREVHLDLEGLCLDKEV 459
            +GR DLLAY  + GIPV + PKA+YSIDENL+HTSYESG+LED M  P   MFKM+  P  AP++ +++ IEFAKGIPVK+TN TDGTVK  PLELF Y NE+AG++GIGRIDIVENRFVGIKSRG+YETP GTLLRE HLD+EG+C+D+EV
Sbjct:  160 KGRKDLLAYCTKHGIPVDAKPKANYSIDENLFHTSYESGMLEDAMVGPDESMFKMSTSPKDAPEQSDTVLIEFAKGIPVKITNTTDGTVKTDPLELFLYCNEIAGKHGIGRIDIVENRFVGIKSRGVYETPGGTLLREAHLDIEGICMDREV 311
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BLAST of mRNA_Ecto-sp13_S_contig15748.4237.1 vs. uniprot
Match: A0A7S1ZRS3_TRICV (Argininosuccinate synthase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZRS3_TRICV)

HSP 1 Score: 224 bits (572), Expect = 8.280e-70
Identity = 105/152 (69.08%), Postives = 124/152 (81.58%), Query Frame = 1 
Query:    4 QGRGDLLAYAAEQGIPVSSTPKASYSIDENLYHTSYESGILEDPMTAPPPEMFKMTVDPLKAPDKVESLRIEFAKGIPVKVTNKTDGTVKDKPLELFCYLNEVAGRNGIGRIDIVENRFVGIKSRGIYETPAGTLLREVHLDLEGLCLDKEV 459
            +GR DLLAY  + GIPV + PKA+YSIDENLYHTSYESG+LED M  P   MFKMTV P  APD  E++ I+F  G+PVK+ N+ DGTVK  PLELF Y NE+AGR+G+GRIDIVENRFVGIKSRG+YETP GTLLRE HLD+EG+C+D+EV
Sbjct:  135 KGRKDLLAYCTKHGIPVDAKPKANYSIDENLYHTSYESGMLEDAMCPPDDSMFKMTVSPKDAPDASETVEIDFKAGVPVKILNRNDGTVKTDPLELFLYCNEIAGRHGVGRIDIVENRFVGIKSRGVYETPGGTLLREAHLDIEGICVDREV 286
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15748.4237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD12_ECTSI1.050e-9998.03Argininosuccinate synthase n=1 Tax=Ectocarpus sili... [more]
A0A6H5KXG1_9PHAE5.220e-9275.88Argininosuccinate synthase n=1 Tax=Ectocarpus sp. ... [more]
A0A7S2UY94_9STRA5.160e-8279.08Argininosuccinate synthase n=1 Tax=Fibrocapsa japo... [more]
A0A836CG55_9STRA5.880e-7478.29Argininosuccinate synthase n=1 Tax=Tribonema minus... [more]
A0A7R9YC46_9STRA1.340e-7373.68Argininosuccinate synthase n=1 Tax=Pinguiococcus p... [more]
A0A7S2SUU2_9STRA3.560e-7376.32Argininosuccinate synthase n=1 Tax=Rhizochromulina... [more]
A0A7S1UIZ0_9STRA3.930e-7273.68Argininosuccinate synthase n=1 Tax=Phaeomonas parv... [more]
W7U626_9STRA6.290e-7171.71Argininosuccinate synthase n=3 Tax=Monodopsidaceae... [more]
A0A6V2AT77_9STRA2.870e-7069.74Argininosuccinate synthase n=1 Tax=Ditylum brightw... [more]
A0A7S1ZRS3_TRICV8.280e-7069.08Argininosuccinate synthase n=1 Tax=Trieres chinens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15748contigEcto-sp13_S_contig15748:385..2834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score303.1
Seed ortholog evalue7.3e-80
Seed eggNOG ortholog2880.D8LD12
Preferred nameASS1
Model size468
KEGG rclassRC00380,RC00629
KEGG koko:K01940
KEGG ReactionR01954
KEGG Pathwayko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418
KEGG ModuleM00029,M00844,M00845
Hectar predicted targeting categoryother localisation
GOsGO:0000050,GO:0000052,GO:0000053,GO:0000323,GO:0001101,GO:0001505,GO:0001655,GO:0001822,GO:0001889,GO:0002237,GO:0002376,GO:0002526,GO:0003674,GO:0003824,GO:0004055,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005764,GO:0005773,GO:0005783,GO:0005829,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006531,GO:0006575,GO:0006807,GO:0006950,GO:0006952,GO:0006953,GO:0006954,GO:0006955,GO:0007162,GO:0007275,GO:0007494,GO:0007517,GO:0007568,GO:0007584,GO:0007623,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009066,GO:0009084,GO:0009410,GO:0009605,GO:0009607,GO:0009617,GO:0009636,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010046,GO:0010243,GO:0012505,GO:0014070,GO:0014074,GO:0014075,GO:0015643,GO:0016020,GO:0016053,GO:0016597,GO:0016874,GO:0016879,GO:0019222,GO:0019627,GO:0019752,GO:0019867,GO:0022407,GO:0022408,GO:0030155,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031406,GO:0031667,GO:0031960,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032355,GO:0032496,GO:0032501,GO:0032502,GO:0032870,GO:0033554,GO:0033762,GO:0033993,GO:0034097,GO:0034201,GO:0034341,GO:0034405,GO:0034612,GO:0034616,GO:0034641,GO:0035295,GO:0035690,GO:0036094,GO:0036477,GO:0042221,GO:0042493,GO:0042802,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043177,GO:0043200,GO:0043204,GO:0043207,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044297,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045428,GO:0045429,GO:0046394,GO:0046683,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048565,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051384,GO:0051591,GO:0051704,GO:0051707,GO:0051716,GO:0055123,GO:0060359,GO:0060416,GO:0060538,GO:0060539,GO:0060541,GO:0061008,GO:0061061,GO:0065007,GO:0065008,GO:0070542,GO:0070852,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071229,GO:0071230,GO:0071242,GO:0071310,GO:0071320,GO:0071345,GO:0071346,GO:0071356,GO:0071375,GO:0071377,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071398,GO:0071400,GO:0071407,GO:0071417,GO:0071418,GO:0071466,GO:0071495,GO:0071498,GO:0071499,GO:0071548,GO:0071549,GO:0071704,GO:0071941,GO:0072001,GO:0072350,GO:0097327,GO:0097458,GO:0098588,GO:0098805,GO:0120025,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901652,GO:1901653,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903037,GO:1903038,GO:1903426,GO:1903428,GO:1904407,GO:2000377,GO:2000379
Exons5
EggNOG free text desc.argininosuccinate synthase activity
EggNOG OGsCOG0137@1,KOG1706@2759
EC6.3.4.5
Cds size468
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462832.4710417-CDS-Ecto-sp13_S_contig15748:384..4531681462832.4710417-CDS-Ecto-sp13_S_contig15748:384..453Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15748 385..453 +
1681462832.482541-CDS-Ecto-sp13_S_contig15748:981..10981681462832.482541-CDS-Ecto-sp13_S_contig15748:981..1098Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15748 982..1098 +
1681462832.4911034-CDS-Ecto-sp13_S_contig15748:1640..16971681462832.4911034-CDS-Ecto-sp13_S_contig15748:1640..1697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15748 1641..1697 +
1681462832.501316-CDS-Ecto-sp13_S_contig15748:2044..21571681462832.501316-CDS-Ecto-sp13_S_contig15748:2044..2157Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15748 2045..2157 +
1681462832.509689-CDS-Ecto-sp13_S_contig15748:2722..28341681462832.509689-CDS-Ecto-sp13_S_contig15748:2722..2834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15748 2723..2834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15748.4237.1prot_Ecto-sp13_S_contig15748.4237.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15748 385..2834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15748.4237.1

>prot_Ecto-sp13_S_contig15748.4237.1 ID=prot_Ecto-sp13_S_contig15748.4237.1|Name=mRNA_Ecto-sp13_S_contig15748.4237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp
LQGRGDLLAYAAEQGIPVSSTPKASYSIDENLYHTSYESGILEDPMTAPP
PEMFKMTVDPLKAPDKVESLRIEFAKGIPVKVTNKTDGTVKDKPLELFCY
LNEVAGRNGIGRIDIVENRFVGIKSRGIYETPAGTLLREVHLDLEGLCLD
KEVGL*
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mRNA from alignment at Ecto-sp13_S_contig15748:385..2834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15748.4237.1 ID=mRNA_Ecto-sp13_S_contig15748.4237.1|Name=mRNA_Ecto-sp13_S_contig15748.4237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15748:385..2834+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCAGGGCCGCGGGGACCTCCTGGCATACGCCGCAGAGCAGGGCATCCC
GGTTTCGTCTACCCCCAAGGTGCGCTGCCGGTCGGTCGTTCTTGACACGT
AGGGTGAAAGGAGGAGGGGGAGGCGTGTAAAAAAAACGAGTGAGAAGGAG
AAAAGTCTGATGGCCTAGCTCTGAGCCTCGCGGTGTACGCTCGTGTGTTT
GGTAAGGTATCGGCTGCGCTCATTCTGGGTTTGGGGCCGTGTCGTGTGAA
CATTCTTCCATGTGCTGACTGTATGCCTGCGTTGCAACAACAGGTACCGT
ACATCAACAACGGCTAGTCGCCAACTTCCACTGCTATTGCTTGCGATCCG
AGCGCGAATTTTCCATTTGCTTCGATCTTCTCAAGAGCGCAAGCTGGTTT
GATCAAATCACAAACCCATACCTGAGCCCATACACGTGGCGTCTCGCATA
TACAATGTAGTGAAACGTCTGCTAAGTTGGGGCGCAAGTATCACGTCTCC
CTCACGCCCCACCCTCCTCTCGTACCTCGCTTTTTCCGGTGCCCTCTCCG
CCCGTGAAAAATGACGTTGTCAACAATAAATACATCGATTTCGACAGGCG
TCGTACTCTATCGACGAGAACCTGTACCACACTTCGTACGAGAGCGGCAT
CCTGGAGGACCCCATGACCGCTCCGCCGCCGGAGATGTTCAAGATGACTG
TCGACCCCCTCAAGGTACGGTAATTGTTTGTCGTGCGTGTTGGTAGATGA
TGTTTGGTTGAGCCATGCAGTCTGGACCTTGATCATGCTGTACGTTCACG
GAATGATGGACATATACCGTAGCACATACCATGAAATATGCGGTAAATTT
GCTTTCCGGAATGCTCGTTAACTTCCCAACTATGTCAGTCGACGCCAATC
ATTCGTAGCTGTACCCAACGTTGCGTGAGTATGTGGGAACCAGTCCGAGC
CCCTCCCTGGTAGTCGTTGGCAAAGTGCATCTCGATGTGGCGTGGCCTGC
ATTAACTTAACCAGGTTGTGCGTATTTTTCACAACAGGGCAAGCCTTGTT
ATCGATCTTTTCTCAAGGTTTCAAGCCTTCGCGACGTGTCACCCGGCAAG
GAAGCCTCTCGAGCGATCGCCAACACCATCTGTCTCGATGCGCCTGTGAA
TGCCCTGGTCTTCTTTGTTGTTGCTGTTGATGATAATGCTGTTCCTGTCG
TTTTATCGTTGTTGTTACGGTTGTCGCAATTGTTGCCGTTATTTCTCTCG
TTGCAGGCACCGGACAAGGTCGAATCTCTCAGGATCGAGTTCGCGAAGGG
AATCCCCGTCAAGGTGAACTCAGGAACTTGACAAAGTACCGTCTTGCCGC
TTTACTGTGGAGCGTAGTACCAGGACGCCACCGGGTACGATGCATGTATC
AGTTTCCCGTGCATGCAACAAGACCTGTGGACAGAGCATACAAGACCGGG
CTCGGTGCGGAATCAATCCTTTATCCGCTAAATAAGGGAGATCGCTTCGT
TCTTTGACGGCTTGTAATTTCGATTTCTTTGTTGCGTGCATGGCATGTGC
GGAAGGGCTTACGTTTGCCGTTCTCCTCGTCCTCCTCCTGGTATGAGAAC
AGGCAACGCATACCCTCGGGATAGTTTTTGAAGTTTTTTTCGCATGTATA
TATACTGAAGGTGACGAACAAGACCGACGGAACCGTGAAGGACAAGCCGT
TGGAGCTCTTCTGCTACCTAAACGAGGTTGCGGGCCGAAACGGCATCGGC
CGCATCGACATCGTAGAGAACCGGTGAGAGACCGAGCGAATTTCTTGCTC
TGTGATAGGTAGTCGCATCCAAAGCTTGCGCGCGCACGTACTATTCCCAT
TGCATCCATTAGCTCATTAGTGATGGAGTGACGAGCATTTGCAGCTCGCG
CAGAAATGCAGGGTCCCATACCAGAATCATGTTTGGAAGTGAAATGCCAC
CCAGGACGACCTTCACAACGATGTATGGTACCATGTGCTGCATCGCCGAA
GACGTAGATATGTTCAAGATACCAGAGAGCACGACCTTTGAGTGTGCAAC
CGTCGTCTCCAATATAGCCAGGGCTGACCTGGAACAAGCTATGGGCCGTG
GTAATTGGCATAATCGAAATCTATGACTGTGCTGATCTGTCCCTTGCCGG
GATAAACAGGCCCGTCTTCGAACATTCCTCGTTGATGGTCCACACACAGG
TGCCCGTCTGCCACTACTGTACGCCTGTGGTACTGTATTGTCGTAAACAT
GCCTGCCTCCGGGTACCCGAAAGGACGATTTGACATGTCAGCCTGCGGGT
CTCTTCTTCTTCCCCGTTTTTTGTTTCTCTTGTTCAAGGTTTGTGGGGAT
CAAGTCTCGAGGGATCTACGAGACTCCGGCGGGGACTCTTCTCCGAGAAG
TCCACCTTGACCTGGAGGGGCTTTGCCTTGACAAGGAGGTGGGTCTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15748:385..2834+

>mRNA_Ecto-sp13_S_contig15748.4237.1 ID=mRNA_Ecto-sp13_S_contig15748.4237.1|Name=mRNA_Ecto-sp13_S_contig15748.4237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15748:385..2834+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCAGGGCCGCGGGGACCTCCTGGCATACGCCGCAGAGCAGGGCATCCC
GGTTTCGTCTACCCCCAAGGCGTCGTACTCTATCGACGAGAACCTGTACC
ACACTTCGTACGAGAGCGGCATCCTGGAGGACCCCATGACCGCTCCGCCG
CCGGAGATGTTCAAGATGACTGTCGACCCCCTCAAGGCACCGGACAAGGT
CGAATCTCTCAGGATCGAGTTCGCGAAGGGAATCCCCGTCAAGGTGACGA
ACAAGACCGACGGAACCGTGAAGGACAAGCCGTTGGAGCTCTTCTGCTAC
CTAAACGAGGTTGCGGGCCGAAACGGCATCGGCCGCATCGACATCGTAGA
GAACCGGTTTGTGGGGATCAAGTCTCGAGGGATCTACGAGACTCCGGCGG
GGACTCTTCTCCGAGAAGTCCACCTTGACCTGGAGGGGCTTTGCCTTGAC
AAGGAGGTGGGTCTGTGA
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