prot_Ecto-sp13_S_contig15742.4235.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15742.4235.1
Unique Nameprot_Ecto-sp13_S_contig15742.4235.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length163
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15742.4235.1 vs. uniprot
Match: D8LNE9_ECTSI (Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNE9_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 1.480e-90
Identity = 149/163 (91.41%), Postives = 153/163 (93.87%), Query Frame = 0 
Query:    1 MSKSAARSLLLLLALQLRNGASFLLPSSAITRCSGFVPRSASCGVMRASEVDGDTEEAASLNVEDETKVEDEGADGLAKSPAGLTLDGVYKRLTLETQGRADGVVGLESKDTDYAIEVVKVQVQRKPSLGMQLEEVARGGDGRGLVLVAGLEPGGNAEASGKV 163
            MSKSAA SLLLLLALQLRNGASFLLPS AITRCSGF  RSASCGVMRASE DGD EE ASLNVEDE KVEDEG DGLA+SP+GLTLDGVYKRLTLETQ RADGVVGLESKDTDYAIEVVKVQ+QRKPSLGMQLEEVARGGDGRGLVLVAGLEPGGNAEASGK+
Sbjct:    1 MSKSAASSLLLLLALQLRNGASFLLPSPAITRCSGFASRSASCGVMRASEADGDAEETASLNVEDEAKVEDEGDDGLARSPSGLTLDGVYKRLTLETQSRADGVVGLESKDTDYAIEVVKVQMQRKPSLGMQLEEVARGGDGRGLVLVAGLEPGGNAEASGKI 163
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BLAST of mRNA_Ecto-sp13_S_contig15742.4235.1 vs. uniprot
Match: A0A4D9CWU2_9STRA (PDZ domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWU2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.870e-9
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 0 
Query:   81 PAGLTLDGVYKRLTLETQGRADGVVGLESKDTDYAIEVVKVQVQR-KPSLGMQLEEVARGGDGRGLVLVAGLEPGGNA 157
            P  LTL+ +  ++  E      G  GLESKD  YA+E+ KV +   +  +G+ LEE+ RG DGRG VLV+ L P GNA
Sbjct:   12 PPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLGEGGIGLGLEELRRGQDGRGCVLVSSLPPEGNA 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15742.4235.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNE9_ECTSI1.480e-9091.41Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A4D9CWU2_9STRA5.870e-944.87PDZ domain-containing protein n=3 Tax=Monodopsidac... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 36..163
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..35
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.714

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15742contigEcto-sp13_S_contig15742:8..1701 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15742.4235.1mRNA_Ecto-sp13_S_contig15742.4235.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15742 8..1701 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15742.4235.1 ID=prot_Ecto-sp13_S_contig15742.4235.1|Name=mRNA_Ecto-sp13_S_contig15742.4235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
MSKSAARSLLLLLALQLRNGASFLLPSSAITRCSGFVPRSASCGVMRASE
VDGDTEEAASLNVEDETKVEDEGADGLAKSPAGLTLDGVYKRLTLETQGR
ADGVVGLESKDTDYAIEVVKVQVQRKPSLGMQLEEVARGGDGRGLVLVAG
LEPGGNAEASGKV
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