mRNA_Ecto-sp13_S_contig15742.4235.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15742.4235.1
Unique NamemRNA_Ecto-sp13_S_contig15742.4235.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15742.4235.1 vs. uniprot
Match: D8LNE9_ECTSI (Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNE9_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 1.480e-90
Identity = 149/163 (91.41%), Postives = 153/163 (93.87%), Query Frame = 1 
Query:    1 MSKSAARSLLLLLALQLRNGASFLLPSSAITRCSGFVPRSASCGVMRASEVDGDTEEAASLNVEDETKVEDEGADGLAKSPAGLTLDGVYKRLTLETQGRADGVVGLESKDTDYAIEVVKVQVQRKPSLGMQLEEVARGGDGRGLVLVAGLEPGGNAEASGKV 489
            MSKSAA SLLLLLALQLRNGASFLLPS AITRCSGF  RSASCGVMRASE DGD EE ASLNVEDE KVEDEG DGLA+SP+GLTLDGVYKRLTLETQ RADGVVGLESKDTDYAIEVVKVQ+QRKPSLGMQLEEVARGGDGRGLVLVAGLEPGGNAEASGK+
Sbjct:    1 MSKSAASSLLLLLALQLRNGASFLLPSPAITRCSGFASRSASCGVMRASEADGDAEETASLNVEDEAKVEDEGDDGLARSPSGLTLDGVYKRLTLETQSRADGVVGLESKDTDYAIEVVKVQMQRKPSLGMQLEEVARGGDGRGLVLVAGLEPGGNAEASGKI 163
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BLAST of mRNA_Ecto-sp13_S_contig15742.4235.1 vs. uniprot
Match: A0A4D9CWU2_9STRA (PDZ domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWU2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.870e-9
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:  241 PAGLTLDGVYKRLTLETQGRADGVVGLESKDTDYAIEVVKVQVQR-KPSLGMQLEEVARGGDGRGLVLVAGLEPGGNA 471
            P  LTL+ +  ++  E      G  GLESKD  YA+E+ KV +   +  +G+ LEE+ RG DGRG VLV+ L P GNA
Sbjct:   12 PPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLGEGGIGLGLEELRRGQDGRGCVLVSSLPPEGNA 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15742.4235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNE9_ECTSI1.480e-9091.41Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A4D9CWU2_9STRA5.870e-944.87PDZ domain-containing protein n=3 Tax=Monodopsidac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15742contigEcto-sp13_S_contig15742:8..1701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score276.6
Seed ortholog evalue7.7e-72
Seed eggNOG ortholog2880.D8LNE9
Model size489
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009767,GO:0009773,GO:0009987,GO:0010598,GO:0015979,GO:0016020,GO:0019684,GO:0022900,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0055114,GO:0098796
Exons2
EggNOG free text desc.2Fe-2S iron-sulfur cluster binding domain
EggNOG OGs2S4WU@2759,COG0633@1
Cds size489
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462832.3191617-CDS-Ecto-sp13_S_contig15742:7..1511681462832.3191617-CDS-Ecto-sp13_S_contig15742:7..151Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15742 8..151 -
1681462832.331676-CDS-Ecto-sp13_S_contig15742:1356..17011681462832.331676-CDS-Ecto-sp13_S_contig15742:1356..1701Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15742 1357..1701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15742.4235.1prot_Ecto-sp13_S_contig15742.4235.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15742 8..1701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15742.4235.1

>prot_Ecto-sp13_S_contig15742.4235.1 ID=prot_Ecto-sp13_S_contig15742.4235.1|Name=mRNA_Ecto-sp13_S_contig15742.4235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
MSKSAARSLLLLLALQLRNGASFLLPSSAITRCSGFVPRSASCGVMRASE
VDGDTEEAASLNVEDETKVEDEGADGLAKSPAGLTLDGVYKRLTLETQGR
ADGVVGLESKDTDYAIEVVKVQVQRKPSLGMQLEEVARGGDGRGLVLVAG
LEPGGNAEASGKV
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mRNA from alignment at Ecto-sp13_S_contig15742:8..1701-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15742.4235.1 ID=mRNA_Ecto-sp13_S_contig15742.4235.1|Name=mRNA_Ecto-sp13_S_contig15742.4235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1694bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15742:8..1701- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAAGTCGGCGGCACGCTCCTTGCTGCTACTCCTCGCTCTGCAGCT
GCGGAACGGCGCTTCTTTCCTGCTGCCCAGCTCGGCCATCACGAGATGCA
GTGGGTTCGTCCCTCGTTCAGCTTCGTGTGGTGTCATGAGGGCATCAGAA
GTAGATGGAGACACCGAGGAGGCCGCTAGTTTGAACGTCGAAGACGAGAC
TAAAGTGGAGGACGAAGGAGCCGACGGTCTAGCAAAAAGCCCGGCTGGGC
TGACTTTGGATGGAGTCTACAAGCGGTTGACGTTGGAAACTCAAGGTCGT
GCGGATGGTGTGGTGGGGCTGGAGTCGAAGGACACTGACTATGCCGTGAG
TTTGTTCTGCATACAATCGTGCTGACCGGCGACATGTGACGATCAGATGC
CCCGGTTCGTAGCCATCTAGGATTGGTTGATCCCCTGTTGACCCGAAGTG
CAAGTTAGCGACACCCACGACGCGCACTAGCTAAGGGCCAAGGGTCGACG
TTCTTCTTGTAATCACATCCCTTGTCCTCACCTACGTAGTACGCGGTTAG
TTACAGGTCATGGGCCCAGAAAGCATGGCGTCCGCTCATTGGAGAAGGCA
TACCCGAGGGACGAAGGCTGACTGGGCTTTCAGTTAAATAAAGTGTCCCC
AATTGCGCTAGGGACCATTTCTGTTCTGAAGCCAAGTCAGCAAACTTTTC
CAGTACCAGGCTATTTTGCAGTTTTACCACCTACGGGACATGTTGCTTGG
GATATGTGTGTACATCAAGTCAGAGGGCGAGGAGAGACACACAGGCATCA
CACAGCAGTGTATCACACAGCGTGTGCATACCACTTTACACAAGCATGGT
AGACCAAGGTCACCAGCGGTTCACACATCCGCGCATGTTCTGACTACAGT
TCGCGAAGCAGACATTTGAGTTCTGTGTCCCTAAATGTCCCGATTCGGCC
TTCCAGCACTATGAGGGCTAACCCCCCCCCCCTGCTGCGAACATGCGTCT
AAAGCTCGGCTACATGTGGGAGTTTCTTTCGGATCCCACGGCCGGTGCAA
CTGTACAGAGGCTGAGTCGTGTGAGCGTGGTTTGGTTCAGTCGATTGTGT
ACACGCTACCGTAGGTGGCAGCGTGTTGCTGGGTATACGTGAGCCTGGAC
TTTGACAAATCTGCATGAATGTGTGCAAGTCACGTAAGAAATAGATATAT
GGTCAACCTTTGACTTACACCGGCTGTAGTTGAACATGTTGTATTCCTCC
GCACCATGACTTGCCGCAGCTATTTCTGCAGAACCGTTCTCGCTGAACAT
GGTGTAGAACAGCGATACACACCAGGTGATAAAAATAACGGCATTCATTT
GCCGATAAGCGCCTCTATCGCGTGTTCAAACCTGTACCAAACGACGTCTT
CAAGCTGAATAAAGCTCACTCGTCAGGGTTATTGTCTGTTTATATCGTCG
AAACAAGTTTATCTTCGACAAAAAACGTGTCCAATCGACCGACATACACA
CCCGGCGTTTCGGTTGTCAACCCACCGAACACGACGCTCAAACCGGGCAG
ATCGAAGTCGTCAAGGTCCAAGTGCAGCGCAAGCCCTCCCTAGGCATGCA
GCTAGAGGAGGTGGCCAGGGGCGGAGACGGTCGCGGCTTGGTCTTGGTGG
CGGGCTTGGAGCCCGGTGGAAACGCCGAAGCTTCGGGCAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15742:8..1701-

>mRNA_Ecto-sp13_S_contig15742.4235.1 ID=mRNA_Ecto-sp13_S_contig15742.4235.1|Name=mRNA_Ecto-sp13_S_contig15742.4235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15742:8..1701- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAAGTCGGCGGCACGCTCCTTGCTGCTACTCCTCGCTCTGCAGCT
GCGGAACGGCGCTTCTTTCCTGCTGCCCAGCTCGGCCATCACGAGATGCA
GTGGGTTCGTCCCTCGTTCAGCTTCGTGTGGTGTCATGAGGGCATCAGAA
GTAGATGGAGACACCGAGGAGGCCGCTAGTTTGAACGTCGAAGACGAGAC
TAAAGTGGAGGACGAAGGAGCCGACGGTCTAGCAAAAAGCCCGGCTGGGC
TGACTTTGGATGGAGTCTACAAGCGGTTGACGTTGGAAACTCAAGGTCGT
GCGGATGGTGTGGTGGGGCTGGAGTCGAAGGACACTGACTATGCCATCGA
AGTCGTCAAGGTCCAAGTGCAGCGCAAGCCCTCCCTAGGCATGCAGCTAG
AGGAGGTGGCCAGGGGCGGAGACGGTCGCGGCTTGGTCTTGGTGGCGGGC
TTGGAGCCCGGTGGAAACGCCGAAGCTTCGGGCAAGGTG
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