mRNA_Ecto-sp13_S_contig1574.4234.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1574.4234.1
Unique NamemRNA_Ecto-sp13_S_contig1574.4234.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1574.4234.1 vs. uniprot
Match: A0A6H5KDM4_9PHAE (RNase_PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM4_9PHAE)

HSP 1 Score: 356 bits (913), Expect = 3.570e-113
Identity = 203/247 (82.19%), Postives = 210/247 (85.02%), Query Frame = 2 
Query:  329 QSRLRGTSPSAAGAAGPRPVPGMVQGKIPTTLP-GTRSTPFVVGQAPMPVAPESLKVKHLDYDDLHVTQGIREEGLRGGGNRGGRGLDINDARDTDLFAKMAAAAKLTEARVNAEEGSRDPKGGATTAGRASSTSAATTQESRNGADSAAAGVGAQGKPRGSSRQGRGRGHAEEDAKSEFARMAQTLRQQSGTTGVGGKQPAAMDVDSDDDEEETVTLEGEFKSAEGMPQVSTGSKGAADKDGPEDM 1066
            +SRLRGTSPSAAGA                    GTRSTPFVVGQAPMPVAPESLKVKHLDYDDLHVTQGIREEGLRGGGNRGGRGLDINDARDTDLFAKMAAAAKLTEARVNAEEGSRDPKG ATTAGRASS SA T QE R G DSAAAGVGA+ KPR S+RQG G GHAEEDAKSEFARMAQTLRQQSGT GVG KQPAAMDVDSDD+EEETVTLEGEFKSAE +P+ STGS G ADKDGP+DM
Sbjct:  309 KSRLRGTSPSAAGAXXXXXXXXXXXXXXXXXXXXGTRSTPFVVGQAPMPVAPESLKVKHLDYDDLHVTQGIREEGLRGGGNRGGRGLDINDARDTDLFAKMAAAAKLTEARVNAEEGSRDPKGRATTAGRASSKSAVTIQEGRYGTDSAAAGVGAERKPRRSTRQGGGEGHAEEDAKSEFARMAQTLRQQSGTKGVGRKQPAAMDVDSDDEEEETVTLEGEFKSAEEVPRASTGSGGVADKDGPKDM 555
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1574.4234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KDM4_9PHAE3.570e-11382.19RNase_PH domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1574contigEcto-sp13_S_contig1574:12600..16045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1530
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionRrp45 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-17_001830.2
Cds size783
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462832.18122-UTR-Ecto-sp13_S_contig1574:12599..129521681462832.18122-UTR-Ecto-sp13_S_contig1574:12599..12952Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1574 12600..12952 -
1681462832.2208362-UTR-Ecto-sp13_S_contig1574:15651..160451681462832.2208362-UTR-Ecto-sp13_S_contig1574:15651..16045Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1574 15652..16045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462832.1922553-CDS-Ecto-sp13_S_contig1574:12952..135261681462832.1922553-CDS-Ecto-sp13_S_contig1574:12952..13526Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1574 12953..13526 -
1681462832.202103-CDS-Ecto-sp13_S_contig1574:14771..148811681462832.202103-CDS-Ecto-sp13_S_contig1574:14771..14881Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1574 14772..14881 -
1681462832.2115936-CDS-Ecto-sp13_S_contig1574:15552..156511681462832.2115936-CDS-Ecto-sp13_S_contig1574:15552..15651Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1574 15553..15651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1574.4234.1prot_Ecto-sp13_S_contig1574.4234.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1574 12953..15651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1574.4234.1

>prot_Ecto-sp13_S_contig1574.4234.1 ID=prot_Ecto-sp13_S_contig1574.4234.1|Name=mRNA_Ecto-sp13_S_contig1574.4234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=261bp
MVQGKIPTTLPGTRSTPFVVGQAPMPVAPESLKVKHLDYDDLHVTQGIRE
EGLRGGGNRGGRGLDINDARDTDLFAKMAAAAKLTEARVNAEEGSRDPKG
GATTAGRASSTSAATTQESRNGADSAAAGVGAQGKPRGSSRQGRGRGHAE
EDAKSEFARMAQTLRQQSGTTGVGGKQPAAMDVDSDDDEEETVTLEGEFK
SAEGMPQVSTGSKGAADKDGPEDMDNDDDDDDDDDLLSAVKKGKGRGRGK
GKAKGKRGKA*
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mRNA from alignment at Ecto-sp13_S_contig1574:12600..16045-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1574.4234.1 ID=mRNA_Ecto-sp13_S_contig1574.4234.1|Name=mRNA_Ecto-sp13_S_contig1574.4234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3446bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1574:12600..16045- (Ectocarpus species13 EcNAP12_S_4_19m)
AACATCTCGCGGAGGGATTTCCTTCGACGTATCGGGATCTTTCCTAGCGC
ACTTGCTTGTGGAGCCATCGACCTTTGCAACATCGGTCTGGGGGGAGGTG
CCATTCCTCCGACTCTCACGGAATACCACGGTACGGTACACGGTACGGTA
CAGACAATTTGGTAAGTGGTGCAATCGACCTTTCCAAGTCGGTCTATAGG
GGGGGTGCCCTCTGTCACACCCTTACGGTAATTTCGCCAACGATGTCGAC
GACCAACAACAAGCATCCACCGTCTCGCCACGCTTCTCTGATGTGTTTCC
CCTTCCTTGGCCTACGCCGCTTTTTCCGCAGAGCCGGCTTCGTGGAACTA
GCCCGAGCGCGGCGGGGGCGGCGGGTCCACGACCCGTCCCTGGAATGGTC
CAAGGAAAGATCCCGACAACGCTCCCCGGAACGAGGTCGACGCCGTTCGT
CGTGGGACAGGCCCCAATGCCGGTCGCCCCAGAATCACTGAAGGTTCGTT
GAAGCCGTCCTGATGGTGCGCCCAGCGGGTCAAAAGCTCTCCCTCTTTGC
CATTTCATCCGGCAATAAATACAAGTTCCTTCCATGGCCCTGCGGCACAA
GTGAAGGCGGCACCTCCGAAGGGTTAACTAGTCGGCGGTTCGATCGATCT
CATCTCCTTGTGCTTCCCTTTCCCTTTCCTCCTCTTGTTTGATCCGTAAA
CCCAAGCACTGCTGTAGCGACACAAGTCCGTCAGTAGTCTCCTTTGTACC
TGTCCTTTCCCTGCGCCTTTTTTCTTCTTTTTTTGGGAGGCCATGAGTGC
ATCCATCACGCACAACGAACCGTTACTTGATAGGAACCTCCTGTTCTTAT
GCGAGGCTCTCTATGCTTGTTTTTTCTCCATGCTTGGAAGGATCTGGGGT
GTGGGGCTCTCTATAAGTCAGTTCTGTGCTCAAAGCCTTTCTGAAAAGCC
TGCCAGGCTTTTGAGTGCTGACCAACTCTGTACTGCAGGACTCGTCTCCT
TGTTGTTGATGATTGATTTCTTCGCATGTCAAGCGCCTGGACTAGTTACG
ACAAGCTCAAATATGTCGAAAATTTGAATTCCCTTGGTAGGTGTCCCCCC
GGCTTTTCTCCCTCACATTTCTTGTTGTGGCCTCACTTTTTTGCCGCCTT
TTTCTTCCCCCCAGGTGAAGCACCTCGATTACGACGACCTCCACGTGACG
CAGGGCATCCGCGAGGAGGGTCTGAGGGGGGGGGGTAACCGTGGGGGGCG
CGGTCTCGACATCAATGACGCCAGGTATGCACAGGCCGGAGGGTCGTGTC
TATCGCCTGCCTTTCGTGTGTGCCCGAGGTTGCGTTTGCCATCAAAAATT
CATACGAGTGTTTTTCGCTTTCGAGATTTCATATTATTTTTCAAAGTGGG
CATCGCATGCGTTCGTTACCCACTCTTTCACTGTATTGTTGCGCGGACGG
TGTTCAGCCTTCACCCCCATCGCACGGAAACTAGCCGGACAGCGTAGACA
TTTTCACGGGGTTTCCGTGAAAGACAATCGGGGTCCACGGGTTGCCGCAA
GAACCACAGCGTCGCTTTGAGCAAGGTGGTGTCTCTGTCATGTGCCGGGC
TTAGCTGTTTGACCCTAACTACCGCCCGGGGAGCACTGCTCCTTCCGTCC
GTACTCGCCATTCGAGGGGATGGTGGTTGGGGGTACTCAGCACTCGATAC
TGATCTACGGAGATCTAGGGGGTTTCGTGTATCAATGTGGTGTGTGTTTG
TAGAGGGGAGATCCCCCTTCTACGCGCATGCGCAGGCATGCCCGGCGCTC
TCATTAATGATACAAGGTCTTGAGTCAACCCTCTTTCCTCTGCGCTCCCG
ACACCAAGCTGCTCGCCTCCAAACGTACCTCTTGCAGTTTGCGCCGACAC
GTACGAACTCGGCAGTCAAGAACTTTATGCTTATGACTGAATCAAACCGG
AAGACCTTGAGTACCATTTGCGAGCCCGCGTTGAGAACCTCCACACGAAA
GCCTGTATGGTGGCCGATTGTATGCATGGCCCTATGAAGCCCAGCCTTAG
CCAAAAGTAACACGTGCGGGGCGCTCGTTGTGCCACCAGGGTTTGCGGAG
GTTTCCGCTTGCACGCGAGCTGCGACTGGAATGATTGTCCTTGTGTCTTG
TGTCTTTGTCGGGGGTCGGGGGTTAAACCATGCTGGTGTATGGCAACTAG
GTCAAGCGCTGGCGCTTTTGATATGAGTCAGGGCTGGGCTAGTGCCATCG
CATGTTCAAGTCGGTTGTCCCTTTCGTCCATCATGAGGGCTAACAGGAAA
GCTCGACGCATTCGTCTAGCCCGTTGGTGGGCTTTGGCTTGCGTGTCTGT
AAGCAGCGCCTGACGCCTGCTACCCTTGCATGAAATCCCCGGACGTTGAG
CTACATTTTCCTACCACACGTTTCTAATCTAACCCTCCCCCGCCACCTCC
GTCCCGCCTGCCCTGTTCGCCCCCCCCCCGCCCCTCTGTTGGTTCACGCA
TCCCTCAACCACACAAAAGGGACACCGACCTGTTCGCCAAGATGGCTGCT
GCGGCGAAGCTGACGGAGGCACGGGTTAACGCCGAAGAAGGAAGCCGAGA
CCCTAAGGGGGGAGCAACGACAGCGGGGCGAGCATCATCAACATCAGCGG
CAACAACTCAGGAGAGTCGAAACGGTGCTGATTCCGCCGCCGCCGGTGTC
GGCGCACAAGGAAAACCACGCGGGAGTTCGAGACAAGGAAGGGGGAGGGG
GCACGCAGAGGAGGACGCGAAGAGCGAGTTTGCACGCATGGCCCAAACGT
TGAGGCAGCAGAGCGGGACCACGGGCGTTGGGGGGAAGCAGCCGGCGGCT
ATGGATGTGGATTCAGACGACGATGAAGAGGAGACGGTTACGCTTGAGGG
CGAGTTTAAGTCTGCCGAGGGGATGCCGCAAGTATCAACAGGGTCGAAGG
GGGCGGCGGACAAGGATGGGCCCGAGGACATGGACAACGATGACGACGAC
GACGACGACGACGATCTTTTGTCGGCAGTCAAGAAAGGGAAAGGCCGCGG
TAGAGGGAAAGGGAAGGCCAAGGGCAAGAGGGGCAAGGCATGACTCAAAT
TACCATGTGTCGGGTTACATGAGCACAATAGATTGACAGGCGTTTTTTCT
TTTTTCTGCGACGTGTATAGGTGTGTGCTGTAGCAGGCGGGGTCTGATCG
TTGTTCGGCAAATCTCCAGCGGGTGCGTAGAGGTATACCATTTGCCCATC
CTCTTCCTACCTCCTCGGGTCTCGAGCGGCGCGGTTGGTCGTGGCGGATA
GCAGCAGTACGGTAGCAGCAGCGGGCACCAAACGTGCTGACTGCCGGTCG
TGTGGTAGTCTACTGGTTTGACGAGGTGTTCTTGAGTGATGGCGGTGACG
GTTTGGAATATAGTGTACGAGCATTGCGGGGGAAGGGCGCGTGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1574:12600..16045-

>mRNA_Ecto-sp13_S_contig1574.4234.1 ID=mRNA_Ecto-sp13_S_contig1574.4234.1|Name=mRNA_Ecto-sp13_S_contig1574.4234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1574:12600..16045- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCCAAGGAAAGATCCCGACAACGCTCCCCGGAACGAGGTCGACGCC
GTTCGTCGTGGGACAGGCCCCAATGCCGGTCGCCCCAGAATCACTGAAGG
TGAAGCACCTCGATTACGACGACCTCCACGTGACGCAGGGCATCCGCGAG
GAGGGTCTGAGGGGGGGGGGTAACCGTGGGGGGCGCGGTCTCGACATCAA
TGACGCCAGGGACACCGACCTGTTCGCCAAGATGGCTGCTGCGGCGAAGC
TGACGGAGGCACGGGTTAACGCCGAAGAAGGAAGCCGAGACCCTAAGGGG
GGAGCAACGACAGCGGGGCGAGCATCATCAACATCAGCGGCAACAACTCA
GGAGAGTCGAAACGGTGCTGATTCCGCCGCCGCCGGTGTCGGCGCACAAG
GAAAACCACGCGGGAGTTCGAGACAAGGAAGGGGGAGGGGGCACGCAGAG
GAGGACGCGAAGAGCGAGTTTGCACGCATGGCCCAAACGTTGAGGCAGCA
GAGCGGGACCACGGGCGTTGGGGGGAAGCAGCCGGCGGCTATGGATGTGG
ATTCAGACGACGATGAAGAGGAGACGGTTACGCTTGAGGGCGAGTTTAAG
TCTGCCGAGGGGATGCCGCAAGTATCAACAGGGTCGAAGGGGGCGGCGGA
CAAGGATGGGCCCGAGGACATGGACAACGATGACGACGACGACGACGACG
ACGATCTTTTGTCGGCAGTCAAGAAAGGGAAAGGCCGCGGTAGAGGGAAA
GGGAAGGCCAAGGGCAAGAGGGGCAAGGCATGA
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