mRNA_Ecto-sp13_S_contig1574.4233.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1574.4233.1
Unique NamemRNA_Ecto-sp13_S_contig1574.4233.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1574.4233.1 vs. uniprot
Match: A0A6H5KJ58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ58_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.200e-52
Identity = 134/262 (51.15%), Postives = 138/262 (52.67%), Query Frame = 1 
Query:  229 MFSSGSEASPRNDRDYGRGTSSVTSTMDDAFESSGTAVKAGGPLMSPVLRTLASSGSGLAEGMMMPVEEVPILPDHAGDTGGLVVAALGAAGRGH------------------------------------------------------------------------GSSGSSSGSPSRVR-------------------------------RRGRLLSEEPENDDASETGKGNKRRHAPPTPKHRVLSGAWGKLAAPERPA 705
            MFSSGSE SPRN RDYGRGTSSVTSTMDDAFES+GT V+A GPLMSPVLRTLAS+GSGLAEGMMMPVEEVPILPD AGDT GLVVAAL AAGRG                                                                         G      G P R +                               RRGR LSEEPENDDAS T KGNKRRHAPPTP HRVLSGAWGKLAAPERPA
Sbjct:    1 MFSSGSEGSPRNGRDYGRGTSSVTSTMDDAFESTGTVVRADGPLMSPVLRTLASAGSGLAEGMMMPVEEVPILPDPAGDTKGLVVAALRAAGRGQQFVPLEPPDMEAPRSTAARAHHGRGRLKQQXXXXXXXXXSDMSETSENAEGGAHLTGGLPLPVDSVGPGVPDGGVDGRRGFPQRKKKTSNIGGXXXXXXXXXXXXXXXXXXXXXXXXRRGRPLSEEPENDDASATVKGNKRRHAPPTPNHRVLSGAWGKLAAPERPA 262
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1574.4233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ58_9PHAE1.200e-5251.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1574contigEcto-sp13_S_contig1574:9597..10729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size819
Hectar predicted targeting categoryother localisation
Exons2
Cds size816
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462832.138118-CDS-Ecto-sp13_S_contig1574:9598..99021681462832.138118-CDS-Ecto-sp13_S_contig1574:9598..9902Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1574 9599..9902 -
1681462832.146258-CDS-Ecto-sp13_S_contig1574:10217..107291681462832.146258-CDS-Ecto-sp13_S_contig1574:10217..10729Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1574 10218..10729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1574.4233.1prot_Ecto-sp13_S_contig1574.4233.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1574 9599..10729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1574.4233.1

>prot_Ecto-sp13_S_contig1574.4233.1 ID=prot_Ecto-sp13_S_contig1574.4233.1|Name=mRNA_Ecto-sp13_S_contig1574.4233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=272bp
FESGGIETQPALESDGRASALDQRTSCSTPSAKLDAGIPDLRRARQSEAL
TARGAAATNPNTNSLLALSSPNLHQRMFSSGSEASPRNDRDYGRGTSSVT
STMDDAFESSGTAVKAGGPLMSPVLRTLASSGSGLAEGMMMPVEEVPILP
DHAGDTGGLVVAALGAAGRGHGSSGSSSGSPSRVRRRGRLLSEEPENDDA
SETGKGNKRRHAPPTPKHRVLSGAWGKLAAPERPAAAAANEEQGGREEQG
KDDCATSCGSRSSSEFTSNSNE
back to top

mRNA from alignment at Ecto-sp13_S_contig1574:9597..10729-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1574.4233.1 ID=mRNA_Ecto-sp13_S_contig1574.4233.1|Name=mRNA_Ecto-sp13_S_contig1574.4233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1133bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1574:9597..10729- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGAAAGCGGCGGCATAGAAACGCAGCCAGCCCTTGAGTCGGACGGCCG
GGCCAGCGCGCTGGATCAGCGTACCAGCTGCAGCACGCCAAGCGCTAAGC
TGGACGCAGGTATCCCCGATCTTCGACGGGCTCGGCAGAGTGAAGCTCTC
ACTGCCCGTGGCGCTGCTGCTACAAACCCCAACACAAACAGCCTCTTGGC
TCTCTCATCGCCCAACCTACACCAGAGAATGTTCTCAAGCGGGAGCGAGG
CGTCTCCTCGCAACGACAGGGACTATGGGCGAGGCACGAGCTCGGTCACG
TCCACGATGGATGACGCCTTCGAGAGCTCGGGGACCGCCGTTAAGGCAGG
CGGCCCCCTGATGTCGCCCGTGTTGCGCACGCTGGCCTCTTCCGGCTCCG
GCCTTGCTGAGGGGATGATGATGCCCGTCGAGGAAGTGCCCATCCTTCCC
GACCACGCTGGTGACACGGGGGGGTTAGTGGTGGCGGCCCTGGGCGCAGC
AGGAAGGGGGCAGCAGTTCGTGCCGCTCGAGCCCCCTGACATCGAGGCTC
CGCGAAGCACAGCAGCAAGGGCTCACCATGGCCGCGGGTGGCTGAAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCACGCCACGGGCGAGAGTGACATGAG
GGAGTCATCAGAAAATGCTGAGGGTGGGGCGCACTTGTCGGGCGGTCTGC
CGCTACCTGTCGGCTCCGTTGGCCCCAGGGTTCCGAACGGCGGGGTGGAT
GGGAGGAGAGGATCCCCACGACGGAAGAAGACTAGCGACATCGGCGGCGG
CGGCGGCGGCGGCGGCAGCGGCGGCAGCGGTAGCAGCGGTAGCAGCAGCG
GCAGCCCGTCCCGTGTGCGTCGAAGAGGCAGACTGCTGTCAGAAGAACCA
GAAAACGACGACGCCTCGGAGACCGGGAAGGGGAACAAGCGGAGACACGC
GCCGCCGACCCCCAAGCACCGCGTCTTGTCCGGGGCCTGGGGGAAGCTTG
CAGCTCCGGAGAGGCCGGCGGCAGCAGCGGCGAATGAAGAACAGGGAGGG
AGGGAAGAGCAGGGCAAGGACGACTGCGCCACCAGCTGCGGCTCGCGGTC
TTCGAGCGAGTTCACCTCAAATTCCAACGAGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1574:9597..10729-

>mRNA_Ecto-sp13_S_contig1574.4233.1 ID=mRNA_Ecto-sp13_S_contig1574.4233.1|Name=mRNA_Ecto-sp13_S_contig1574.4233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=816bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1574:9597..10729- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGAAAGCGGCGGCATAGAAACGCAGCCAGCCCTTGAGTCGGACGGCCG
GGCCAGCGCGCTGGATCAGCGTACCAGCTGCAGCACGCCAAGCGCTAAGC
TGGACGCAGGTATCCCCGATCTTCGACGGGCTCGGCAGAGTGAAGCTCTC
ACTGCCCGTGGCGCTGCTGCTACAAACCCCAACACAAACAGCCTCTTGGC
TCTCTCATCGCCCAACCTACACCAGAGAATGTTCTCAAGCGGGAGCGAGG
CGTCTCCTCGCAACGACAGGGACTATGGGCGAGGCACGAGCTCGGTCACG
TCCACGATGGATGACGCCTTCGAGAGCTCGGGGACCGCCGTTAAGGCAGG
CGGCCCCCTGATGTCGCCCGTGTTGCGCACGCTGGCCTCTTCCGGCTCCG
GCCTTGCTGAGGGGATGATGATGCCCGTCGAGGAAGTGCCCATCCTTCCC
GACCACGCTGGTGACACGGGGGGGTTAGTGGTGGCGGCCCTGGGCGCAGC
AGGAAGGGGGCACGGTAGCAGCGGTAGCAGCAGCGGCAGCCCGTCCCGTG
TGCGTCGAAGAGGCAGACTGCTGTCAGAAGAACCAGAAAACGACGACGCC
TCGGAGACCGGGAAGGGGAACAAGCGGAGACACGCGCCGCCGACCCCCAA
GCACCGCGTCTTGTCCGGGGCCTGGGGGAAGCTTGCAGCTCCGGAGAGGC
CGGCGGCAGCAGCGGCGAATGAAGAACAGGGAGGGAGGGAAGAGCAGGGC
AAGGACGACTGCGCCACCAGCTGCGGCTCGCGGTCTTCGAGCGAGTTCAC
CTCAAATTCCAACGAG
back to top