mRNA_Ecto-sp13_S_contig15734.4230.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15734.4230.1
Unique NamemRNA_Ecto-sp13_S_contig15734.4230.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15734.4230.1 vs. uniprot
Match: D8LT15_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT15_ECTSI)

HSP 1 Score: 408 bits (1049), Expect = 2.020e-132
Identity = 220/256 (85.94%), Postives = 231/256 (90.23%), Query Frame = 2 
Query:  221 HTMVLIKRSPCLMGGGTMEAADGPGVDKAASPRRSADDVTNLWSIPAIGGGPVVALTFRAMTS*NSPSLPAVKLPLYEGKADKTSSVAGAVGFQGSAGRSLGVKGSNRTPPLTPPPQSTRSPVLSITDIAPHLSAPSRSSAAGGAPTTTAHLNRSRSIAGPIVKMPPSPSRLHGALPCGTCIVGDAQMALTRSWAHIAIADSQVPNMAAETTLAGITAARVINSAAVKESLTSGKAARRSHHEERHVKPRVRHDAG 988
            HTM LIKRSP LMGGGT EAADGP VDKAASPRRSADDVT L SIPAIGGGP VA TFR MTS NSPSLPAVKLPLYEGKA+KTSSVAGAVG QGSAGRSLGVKG NRTPPLTPPPQ  RSPVLSITDI+  LSAPS SSA G APTTTA L RSRS+AGP+VK+PPSPSRLHGALPCGTC+VGDAQMALTRSWAHIAIADS+VPN+AAETTLAG+TAARV+ S AVKESL SG+AARRSHHEER VKPRVRHDAG
Sbjct:  160 HTMALIKRSPRLMGGGTTEAADGPDVDKAASPRRSADDVTKLSSIPAIGGGPAVARTFRPMTSGNSPSLPAVKLPLYEGKANKTSSVAGAVGLQGSAGRSLGVKGPNRTPPLTPPPQFARSPVLSITDISRPLSAPSGSSAGGSAPTTTALLPRSRSVAGPVVKVPPSPSRLHGALPCGTCVVGDAQMALTRSWAHIAIADSEVPNIAAETTLAGVTAARVVKSEAVKESLASGQAARRSHHEERRVKPRVRHDAG 415
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15734.4230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT15_ECTSI2.020e-13285.94Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15734contigEcto-sp13_S_contig15734:1047..2082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1038
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462832.046675-UTR-Ecto-sp13_S_contig15734:1046..17581681462832.046675-UTR-Ecto-sp13_S_contig15734:1046..1758Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15734 1047..1758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462832.055319-CDS-Ecto-sp13_S_contig15734:1758..20821681462832.055319-CDS-Ecto-sp13_S_contig15734:1758..2082Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15734 1759..2082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15734.4230.1prot_Ecto-sp13_S_contig15734.4230.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15734 1759..2082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15734.4230.1

>prot_Ecto-sp13_S_contig15734.4230.1 ID=prot_Ecto-sp13_S_contig15734.4230.1|Name=mRNA_Ecto-sp13_S_contig15734.4230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MPPSPSRLHGALPCGTCIVGDAQMALTRSWAHIAIADSQVPNMAAETTLA
GITAARVINSAAVKESLTSGKAARRSHHEERHVKPRVRHDAGEKETERPC
PAWDQQQQ
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mRNA from alignment at Ecto-sp13_S_contig15734:1047..2082+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15734.4230.1 ID=mRNA_Ecto-sp13_S_contig15734.4230.1|Name=mRNA_Ecto-sp13_S_contig15734.4230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1036bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15734:1047..2082+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGACAGGGGCTGCGGCGAGCGTGCTGGCCGAGGGCCTAGCCGATAAA
AGCACGGCAGAGAACCAGCAGATGCACGAGAATCGGGCGGTGGCAGCAGC
GGGGCCAGCGAGGGAAAGGTCAATCGGAGTCGTCGGAAAAGCGCGGGAGG
GCTTCCGAGTCCTGATGGCGCCGGAGGGTAGGGAACCGAAGTCCACGGTG
GTGTCGAAGGGCGACGTACTCATACGATGGTTCTGATCAAAAGGTCACCT
TGCTTGATGGGGGGTGGCACTATGGAGGCGGCGGACGGACCAGGCGTAGA
CAAGGCAGCGTCTCCTAGGAGATCTGCGGACGATGTGACGAACTTGTGGT
CGATCCCAGCGATAGGAGGAGGACCCGTTGTCGCACTCACGTTCCGCGCC
ATGACCTCTTGAAACTCGCCCAGCCTGCCAGCAGTCAAGTTGCCGTTGTA
TGAAGGGAAAGCTGACAAGACATCTTCTGTTGCTGGAGCGGTTGGCTTTC
AGGGCTCTGCTGGTCGTTCTTTGGGCGTCAAGGGATCGAACCGCACCCCG
CCGCTCACACCACCGCCGCAGTCCACCCGCTCGCCGGTACTATCCATCAC
TGACATCGCGCCGCACCTCTCTGCACCGAGTCGAAGCTCGGCCGCCGGCG
GTGCGCCGACGACGACCGCTCACCTGAATCGCAGTAGAAGTATTGCCGGC
CCCATCGTCAAGATGCCGCCATCGCCATCAAGGCTTCACGGCGCTCTGCC
CTGCGGCACTTGCATTGTTGGAGATGCTCAAATGGCACTGACCCGGTCCT
GGGCGCATATCGCGATTGCCGACTCACAGGTGCCGAACATGGCTGCCGAG
ACGACCCTCGCTGGCATTACCGCTGCACGGGTTATCAACTCGGCGGCGGT
GAAGGAGTCTTTGACGAGTGGGAAGGCGGCGCGGCGATCACACCACGAGG
AGCGGCACGTGAAACCGAGGGTTCGCCACGATGCTGGTGAGAAGGAGACA
GAGAGGCCGTGCCCTGCTTGGGACCAGCAACAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15734:1047..2082+

>mRNA_Ecto-sp13_S_contig15734.4230.1 ID=mRNA_Ecto-sp13_S_contig15734.4230.1|Name=mRNA_Ecto-sp13_S_contig15734.4230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15734:1047..2082+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCCATCGCCATCAAGGCTTCACGGCGCTCTGCCCTGCGGCACTTG
CATTGTTGGAGATGCTCAAATGGCACTGACCCGGTCCTGGGCGCATATCG
CGATTGCCGACTCACAGGTGCCGAACATGGCTGCCGAGACGACCCTCGCT
GGCATTACCGCTGCACGGGTTATCAACTCGGCGGCGGTGAAGGAGTCTTT
GACGAGTGGGAAGGCGGCGCGGCGATCACACCACGAGGAGCGGCACGTGA
AACCGAGGGTTCGCCACGATGCTGGTGAGAAGGAGACAGAGAGGCCGTGC
CCTGCTTGGGACCAGCAACAGCAG
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