mRNA_Ecto-sp13_S_contig15730.4227.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15730.4227.1
Unique NamemRNA_Ecto-sp13_S_contig15730.4227.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15730.4227.1 vs. uniprot
Match: A0A6H5KA22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA22_9PHAE)

HSP 1 Score: 381 bits (979), Expect = 1.050e-128
Identity = 188/199 (94.47%), Postives = 191/199 (95.98%), Query Frame = 1 
Query:  550 GHAATEDVEVARLRRDLETEHTRRVKAETLIHKSSGSGLRPGAFPGVRDVYQHVGHLADDALAWTEKAFVVGGSRQAWYRTTRSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEKSLDTQYVLYECLCRNYRTIVSTEPDRMDELAELILQRCGEPADRGLANEITSGATWPSFEALMKNYLLVFVEV 1146
            G+ ATEDVEV RLRRDLETEHTRRVKAETLIH+SSG GLRPGAFPGVRDVYQHVGHLADDALAWTEKAF VGGSRQAWY TTRSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEKSLDTQYVLYECLCR YRTIVSTEPDRMDELA LILQRCGEPADRGLANEI SGATWPSFEALMKNYLLVFVE+
Sbjct:   59 GYGATEDVEVDRLRRDLETEHTRRVKAETLIHRSSGGGLRPGAFPGVRDVYQHVGHLADDALAWTEKAFAVGGSRQAWYGTTRSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEKSLDTQYVLYECLCRKYRTIVSTEPDRMDELAGLILQRCGEPADRGLANEIMSGATWPSFEALMKNYLLVFVEM 257
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BLAST of mRNA_Ecto-sp13_S_contig15730.4227.1 vs. uniprot
Match: D7FSP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP1_ECTSI)

HSP 1 Score: 367 bits (943), Expect = 1.650e-122
Identity = 181/199 (90.95%), Postives = 184/199 (92.46%), Query Frame = 1 
Query:  550 GHAATEDVEVARLRRDLETEHTRRVKAETLIHKSSGSGLRPGAFPGVRDVYQHVGHLADDALAWTEKAFVVGGSRQAWYRTTRSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEKSLDTQYVLYECLCRNYRTIVSTEPDRMDELAELILQRCGEPADRGLANEITSGATWPSFEALMKNYLLVFVEV 1146
            GH ATEDVEV RLRRDL+TEHTRRV AETLIH+SSG GLRPG FP V DVYQHVGHLADDALAWTEKAF VGGSRQ WY TTRSVLYNTFLVCREEVQRCLDERLQ LSAFLGN EPILLSAGDEKSLD QYVLYECLCR YRTIVSTEPDRMDELA LILQRCGEPADRGLANEITSGATWPSFEALMKNYLLVFVE+
Sbjct:  109 GHGATEDVEVGRLRRDLDTEHTRRVNAETLIHRSSGGGLRPGVFPSVGDVYQHVGHLADDALAWTEKAFAVGGSRQTWYGTTRSVLYNTFLVCREEVQRCLDERLQILSAFLGNAEPILLSAGDEKSLDPQYVLYECLCRKYRTIVSTEPDRMDELARLILQRCGEPADRGLANEITSGATWPSFEALMKNYLLVFVEM 307
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BLAST of mRNA_Ecto-sp13_S_contig15730.4227.1 vs. uniprot
Match: D7FSP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP0_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 5.020e-100
Identity = 156/196 (79.59%), Postives = 169/196 (86.22%), Query Frame = 1 
Query:  559 ATEDVEVARLRRDLETEHTRRVKAETLIHKSSGSGLRPGAFPGVRDVYQHVGHLADDALAWTEKAFVVGGSRQAWYRTTRSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEKSLDTQYVLYECLCRNYRTIVSTEPDRMDELAELILQRCGEPADRGLANEITSGATWPSFEALMKNYLLVFVEV 1146
            A  +VE+ RLRRDLETEHTRRVKAETL+H++ G GLR G FP VRDVYQHV  LADDALAWTEKA  VGGS  A   T  SVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDE +LDTQYVLYECLC++Y+ IV  +PDRMD LA ++LQRCGEPADR LANEI SGATWPSFEALMKNYLLVFVE+
Sbjct:  258 ANTEVELGRLRRDLETEHTRRVKAETLVHRAKGGGLRSGDFPSVRDVYQHVYQLADDALAWTEKACAVGGSHPALNGTVLSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEMNLDTQYVLYECLCKDYQRIVPADPDRMDALAGVVLQRCGEPADRSLANEILSGATWPSFEALMKNYLLVFVEM 453
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BLAST of mRNA_Ecto-sp13_S_contig15730.4227.1 vs. uniprot
Match: A0A6H5KFA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA2_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 3.010e-96
Identity = 148/196 (75.51%), Postives = 165/196 (84.18%), Query Frame = 1 
Query:  559 ATEDVEVARLRRDLETEHTRRVKAETLIHKSSGSGLRPGAFPGVRDVYQHVGHLADDALAWTEKAFVVGGSRQAWYRTTRSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEKSLDTQYVLYECLCRNYRTIVSTEPDRMDELAELILQRCGEPADRGLANEITSGATWPSFEALMKNYLLVFVEV 1146
            A  +VE+ RLRRDLETEH+RRVKAETL+H++ G GLR G FP VRDVYQHV  LADDALAWTEKA  VGGS  A   T  SVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDE +LDTQYVLYECLC++Y+ IV  +PDRM+ LA ++L+RC EPAD  LANEI SG  WPSFEALMKNYL+VFVE+
Sbjct:   88 ANTEVELGRLRRDLETEHSRRVKAETLVHRAKGGGLRSGDFPSVRDVYQHVYQLADDALAWTEKACAVGGSHPAVNGTILSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEMNLDTQYVLYECLCKDYQRIVPADPDRMNALAGVVLRRCEEPADESLANEIISGPAWPSFEALMKNYLMVFVEM 283
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BLAST of mRNA_Ecto-sp13_S_contig15730.4227.1 vs. uniprot
Match: D7FRD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRD0_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 6.400e-46
Identity = 100/207 (48.31%), Postives = 126/207 (60.87%), Query Frame = 1 
Query:  568 DVEVARLRRDLETEHTRRVKAE--------------TLIHKSSGSGLRPGA-FPGVRDVYQHVGH-LADDALAWTEKAFVVGGSRQAWYRTTRSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEKSLDTQYVLYECLCRNYRTIVSTEPDRMDELAELILQRCGEPADRGLANEITSGATWPSFEALMKNYLLVFV 1140
            D E+  LR+ + TE +RR  AE              +L+ +S   G+RPG  FP VR V Q + H L DDAL WTEK   +GGS+     T R+VL +TF VCR+E  RCLD RL+  +  LG DEPI LS     +LDT+YVLY CLCRNY+TIVS +P ++  LA  I+QRC    D  LA  ITSG   P F+ALMK+YL VF+
Sbjct:  104 DAELDTLRKKVATEKSRRELAEADMEAARRQLNAYESLVLRSEVKGVRPGNDFPSVRSVLQEIKHGLIDDALRWTEKVSTLGGSQAGLTATIRAVLEHTFHVCRKEAMRCLDNRLRAFTECLGEDEPISLSGDKSMNLDTEYVLYTCLCRNYKTIVSMKPSQVQNLAVTIVQRCKGHED--LAGSITSGNARPFFDALMKHYLQVFI 308
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15730.4227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KA22_9PHAE1.050e-12894.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSP1_ECTSI1.650e-12290.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSP0_ECTSI5.020e-10079.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFA2_9PHAE3.010e-9675.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRD0_ECTSI6.400e-4648.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15730contigEcto-sp13_S_contig15730:759..4088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1146
Hectar predicted targeting categoryother localisation
Exons3
Cds size1146
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462831.8787978-CDS-Ecto-sp13_S_contig15730:758..11881681462831.8787978-CDS-Ecto-sp13_S_contig15730:758..1188Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15730 759..1188 +
1681462831.8878493-CDS-Ecto-sp13_S_contig15730:2339..24991681462831.8878493-CDS-Ecto-sp13_S_contig15730:2339..2499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15730 2340..2499 +
1681462831.8974283-CDS-Ecto-sp13_S_contig15730:3532..40881681462831.8974283-CDS-Ecto-sp13_S_contig15730:3532..4088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15730 3533..4088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15730.4227.1prot_Ecto-sp13_S_contig15730.4227.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15730 759..4088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15730.4227.1

>prot_Ecto-sp13_S_contig15730.4227.1 ID=prot_Ecto-sp13_S_contig15730.4227.1|Name=mRNA_Ecto-sp13_S_contig15730.4227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=382bp
PGKPLTPTPTVLDPTAPTVLNTTAPTMLPTPAPTVLNTTAPTMLPTPAPT
VLNTTAPTMLPTPAPMVQPTPTSTEPTMQPKPDPTEPTMQATPQPTTPIA
DDTLQGDDSTATDDGQPDTDGNTTQEGDDDGAVVATSDASNSESSTTGVV
VLSGILAALVLGNAVWLACCLRRRKRPPTPPAGGHAATEDVEVARLRRDL
ETEHTRRVKAETLIHKSSGSGLRPGAFPGVRDVYQHVGHLADDALAWTEK
AFVVGGSRQAWYRTTRSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEP
ILLSAGDEKSLDTQYVLYECLCRNYRTIVSTEPDRMDELAELILQRCGEP
ADRGLANEITSGATWPSFEALMKNYLLVFVEV
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mRNA from alignment at Ecto-sp13_S_contig15730:759..4088+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15730.4227.1 ID=mRNA_Ecto-sp13_S_contig15730.4227.1|Name=mRNA_Ecto-sp13_S_contig15730.4227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15730:759..4088+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGGAAAACCTCTTACGCCAACACCAACTGTACTGGATCCGACAGCACC
AACGGTACTGAATACGACAGCACCAACGATGCTGCCTACGCCAGCACCAA
CGGTACTGAATACGACAGCACCAACGATGCTGCCTACGCCAGCACCAACG
GTACTGAATACGACAGCACCAACGATGCTGCCTACGCCAGCACCAATGGT
GCAGCCTACGCCAACATCAACGGAACCAACGATGCAGCCTAAGCCCGACC
CAACGGAACCAACGATGCAGGCTACGCCACAACCAACGACGCCGATTGCG
GATGACACTTTACAAGGTGACGACAGCACCGCCACCGATGATGGCCAGCC
CGATACCGACGGGAACACCACTCAGGAAGGCGATGACGACGGAGCGGTGG
TTGCCACAAGTGACGCCTCCAACTCAGAATGTAAGTGCCTCACGACCTCG
CGCCACATAGACGCAACATACCCACCCAAGGGGACGCCTCTCGAATGTAC
CTCTGCCGACGAGCTGCTCCATGGGTACCTTGCCGTCGTTGCTTCTGCCG
CTGTCTTTACTGTCGCTCCGTGGGCTCGCCTTGCCTAAATTGGCCGCGTC
GCGAAACAGCTACACCGTTCTATTTCATTTGCACCTGTCGTGAACGGTCT
GGGTTCTGTTGGTTCACCTAACCCCGGTGCTCATTGCTAGTATAGGTTGT
TTTGGAAAAATGCAAGCTGCCATTTTCCTGGGGAACGGTGGAACGCCTGG
AACGCGAGTTGTACAGCAGTACAGTTTAGATCCTGATATCGATCTCCCCC
CCCCCATGTATTCTCGAGGGCACAAGCCGATGTGTATCTTTCAAGATCTC
GACAACCGTGCGATGACGGTTCGCAGTGCATGCATTGTACACCTTCATTT
TCAGGCATGGTGACACAACGTGCGCCGCACGCACAGCAGCGAGATTGGAA
GCTGTTATGTCCTTGCGGACGGCAGAGCGCACAGGGCCATCACGCCAAGG
CCTAGACTCTCAGACTCCTCGTCACTGGCAGCTTCCTTTTGTCGACCGCT
TTTTTGACCCAGGGGACCAGAACACCCGCACACCCGTCCCCACCAACGAT
GAACGCCGTAGCGTATTTCGTGTGTACAAACACGCAACGCTGTCACTTGT
TTTTCCTTAGGCTGCGTAGCACGCCAACTGAGAACTGGCAACAATGACGA
CCGGGCGGAAGCACCCCAACATGGCTTAACGGCAACCCCCTTACTAAAGA
CCGTTTCTCGCGAAGCTGTCTTCCGTTCACAGGTCGGATACAGCTCGGCA
GCTGCTCTGAGGCTGTGCCTCGCGCGTTGAGCAAGTTTGTCCAGACGTGG
GTTATGTGCGTGTTGATGGTACCGGAGTTGGCGCACATAGTCGGCACGCG
ACCGTTATCTCTTGCAACATGCTCGTGGTTATTTCGGCGCTTCTGAAGGA
GAAACCATGTACAACCACGCGCGGGGTTGAGGGCCGATAAAACGCTGCGA
TGAGAATTCCTGCTCCGAGAGCGTGCATTTGCGTGACTGCCCTACGGGCT
CGTTTTTCCCAACTCTGGTTTCATGTGCCAGCTTCCACGACTGGGGTCGT
CGTGCTCTCGGGCATCCTGGCTGCTTTGGTGCTGGGAAATGCAGTTTGGC
TCGCGTGTTGCCTCCGCAGGCGCAAACGTCCTCCAACTCCGCCCGCGGGC
GGCCATGCCGCCACTGAAGACGTCGAGGTGGCCCGTCTTCGGTGAGTATC
GTACGACCAATACTGGCGTGTACGTTGTGTGTCCATGCGCATGGTGGGAG
AGGGCTGCAGCTGTTCGTGTGGGCATTCCGGTCACGCGAAAAGCGTCGAG
TGGTTGCACGTCGCCGACCATGGTTGTAGCTTCCTCGCGGAACCTGTCAA
ACGCCGCGTGGCAGATAGTCCAACACAGTGTTGCGTCGTACATATCGCAG
GCGCAAGAGAGGATAGTTGCTGAGCTCGACGTAAGGGGAGCCGTCGAACC
AACCCTTCTTCGTCATGACTCTCTTTCCAAATAGAGCTGCAGTCCCCTGT
GGGTACCTGCTCAGCGCGATGAGCAAAGGGATGCAACTGCTGCGTTGAAC
TGCTGCGTTTAAAGGCCCTCTCATGTTGTTCTCGCAAAACAGGTGGCGTT
TGAGGTTGTGCCCAAGCTTGCAGTTTTGTGTACTGCGTGTGTCGTGCATG
GAACGAACACGAAGCGTCGCGAGGAAAATCCCCAAATAAGTATAGTACTA
GACGCCCCCATACACCTCATACCGCAAGCACCCTGTCGCAACTAATTCGG
ATGGGTGGACGGGGGCTTCTACACAGGCGGGAACAGCGGCCTTCCCCATT
GGCGTCAGGGCTGAGAAGGACGGCACGTACGGTTTCCTGTGCGGTGAAAT
TGGAGATGTGCTGCGAATCTCAACCAATTTCTGCGCAGGCTGCTGAATGA
TTTGAAGAGTTTTTTGAACAGTCAAATGGTTTATTTTTTGTCAGCGGCGC
CCCTTAAATTCCTCAAGAATTTCCTGTACAGTTTGGCCTGTCGGCACTTA
TTTTATTAAGACTAGCACATCATCGCGTGTACTCTTTTACTGCGAGGAGA
AAAATTTGTGTGCATTGGTCTACGGCACAAGCGTGTTTGCGACGTGATCG
GCTCTCAGTAACAGCTGTTCGTCAACGGCGTCAGCGCGTTCATGATTGGA
TTGTTCCTCAACAGCTGCCTTGCGTTTTGGTTGGCGTTCCGCTTCACGTC
CGTGTGCGGCATCTTGCACCGCAGGAGGGACCTCGAGACTGAGCACACCA
GGCGCGTCAAGGCTGAGACCCTGATTCATAAGTCGAGCGGTAGCGGGCTA
CGCCCTGGCGCCTTCCCCGGCGTCCGCGACGTGTACCAGCACGTGGGGCA
CCTGGCGGACGACGCGCTCGCGTGGACCGAGAAAGCTTTCGTCGTCGGCG
GGTCCCGCCAGGCCTGGTACAGGACGACACGGAGTGTCCTGTACAACACT
TTCCTGGTCTGCAGGGAGGAGGTGCAGCGATGCTTGGACGAGAGGCTCCA
GAACCTGTCGGCGTTCCTGGGCAACGACGAGCCCATCCTGCTGTCGGCCG
GCGACGAGAAGAGCCTGGACACGCAGTACGTGCTGTACGAGTGCCTCTGC
AGGAATTACCGGACGATCGTGTCGACGGAACCAGACCGCATGGATGAGCT
GGCTGAGCTTATCCTTCAGCGCTGCGGGGAGCCTGCGGACAGGGGCCTCG
CCAACGAGATTACGTCTGGCGCCACGTGGCCTTCCTTCGAGGCCCTCATG
AAGAACTACTTGCTGGTTTTCGTCGAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15730:759..4088+

>mRNA_Ecto-sp13_S_contig15730.4227.1 ID=mRNA_Ecto-sp13_S_contig15730.4227.1|Name=mRNA_Ecto-sp13_S_contig15730.4227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1146bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15730:759..4088+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGGAAAACCTCTTACGCCAACACCAACTGTACTGGATCCGACAGCACC
AACGGTACTGAATACGACAGCACCAACGATGCTGCCTACGCCAGCACCAA
CGGTACTGAATACGACAGCACCAACGATGCTGCCTACGCCAGCACCAACG
GTACTGAATACGACAGCACCAACGATGCTGCCTACGCCAGCACCAATGGT
GCAGCCTACGCCAACATCAACGGAACCAACGATGCAGCCTAAGCCCGACC
CAACGGAACCAACGATGCAGGCTACGCCACAACCAACGACGCCGATTGCG
GATGACACTTTACAAGGTGACGACAGCACCGCCACCGATGATGGCCAGCC
CGATACCGACGGGAACACCACTCAGGAAGGCGATGACGACGGAGCGGTGG
TTGCCACAAGTGACGCCTCCAACTCAGAATCTTCCACGACTGGGGTCGTC
GTGCTCTCGGGCATCCTGGCTGCTTTGGTGCTGGGAAATGCAGTTTGGCT
CGCGTGTTGCCTCCGCAGGCGCAAACGTCCTCCAACTCCGCCCGCGGGCG
GCCATGCCGCCACTGAAGACGTCGAGGTGGCCCGTCTTCGGAGGGACCTC
GAGACTGAGCACACCAGGCGCGTCAAGGCTGAGACCCTGATTCATAAGTC
GAGCGGTAGCGGGCTACGCCCTGGCGCCTTCCCCGGCGTCCGCGACGTGT
ACCAGCACGTGGGGCACCTGGCGGACGACGCGCTCGCGTGGACCGAGAAA
GCTTTCGTCGTCGGCGGGTCCCGCCAGGCCTGGTACAGGACGACACGGAG
TGTCCTGTACAACACTTTCCTGGTCTGCAGGGAGGAGGTGCAGCGATGCT
TGGACGAGAGGCTCCAGAACCTGTCGGCGTTCCTGGGCAACGACGAGCCC
ATCCTGCTGTCGGCCGGCGACGAGAAGAGCCTGGACACGCAGTACGTGCT
GTACGAGTGCCTCTGCAGGAATTACCGGACGATCGTGTCGACGGAACCAG
ACCGCATGGATGAGCTGGCTGAGCTTATCCTTCAGCGCTGCGGGGAGCCT
GCGGACAGGGGCCTCGCCAACGAGATTACGTCTGGCGCCACGTGGCCTTC
CTTCGAGGCCCTCATGAAGAACTACTTGCTGGTTTTCGTCGAGGTG
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