mRNA_Ecto-sp13_S_contig15729.4226.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15729.4226.1
Unique NamemRNA_Ecto-sp13_S_contig15729.4226.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15729.4226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15729contigEcto-sp13_S_contig15729:453..1896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size223
Hectar predicted targeting categoryother localisation
Exons3
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462831.8139098-CDS-Ecto-sp13_S_contig15729:452..5001681462831.8139098-CDS-Ecto-sp13_S_contig15729:452..500Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15729 453..500 -
1681462831.8273237-CDS-Ecto-sp13_S_contig15729:668..6981681462831.8273237-CDS-Ecto-sp13_S_contig15729:668..698Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15729 669..698 -
1681462831.8385305-CDS-Ecto-sp13_S_contig15729:1751..18891681462831.8385305-CDS-Ecto-sp13_S_contig15729:1751..1889Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15729 1752..1889 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462831.8485365-UTR-Ecto-sp13_S_contig15729:1889..18961681462831.8485365-UTR-Ecto-sp13_S_contig15729:1889..1896Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15729 1890..1896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15729.4226.1prot_Ecto-sp13_S_contig15729.4226.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15729 453..1889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15729.4226.1

>prot_Ecto-sp13_S_contig15729.4226.1 ID=prot_Ecto-sp13_S_contig15729.4226.1|Name=mRNA_Ecto-sp13_S_contig15729.4226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
MDNQRSGSTQGAGGNNGGRSDGALAQQQQQQQQQQQQQQQQVNRVEQRSR
FDLRTQGSAQGGNGNGVYNNS*
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mRNA from alignment at Ecto-sp13_S_contig15729:453..1896-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15729.4226.1 ID=mRNA_Ecto-sp13_S_contig15729.4226.1|Name=mRNA_Ecto-sp13_S_contig15729.4226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15729:453..1896- (Ectocarpus species13 EcNAP12_S_4_19m)
AAAAAAAATGGACAACCAAAGAAGCGGATCCACCCAGGGGGCCGGTGGTA
ACAACGGCGGGAGATCGGACGGAGCGCTAGCCCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAACAGCAGGTAAACCGCGTTGAGGTGTA
TGGCTACTACGAGCGTAGGGGGGAGGGAGAAATCTACACCTGTTTTCCGA
TAAATAGTCCACACGCAATCAGATACTCGAAAGTAGTTCAAGAAGTTTGC
GGGCGGCACATCATTTTCGAAAACAAGTTCGAATAACAGTGTATTTCGGT
ATCATAGCAGCGATGAGTTTTTCCGATCCTTCCCTTAGTCGGCGGTGCAG
TACTTAGCAGTTAACTCTCCTCGGTATTCTTTTTAGTGTCAAGGATACGT
GGAGGATGGGCGGAGCAAAGAAACCACCAGCGGCGTGACGTTTTGCTCAG
AATCAATCGCCGGTGGCATCGCGGGATGCAAGCAGGATCCCAAGGTTTAC
TCATGTTGCCAACAACACTGCAGTTTTTCTCGAATAAAACACGTTCTCGA
CAACAAAGCGCGCGCTCGGGGGATGTTTCGGGTGAGGTGCTGCTACACAT
AGCTGCGGAACGCCTTCGCTTTTTCATGTTCGATTGCACCAAATTTTGCC
GCATGCTCGTCCCGAAATATAGCCACCTCCCCCCCCCCCCCGCACAAACA
AACGGGGTGACCGCAACCAGAAACTGCAGAGCGTCCCGACGCGAACCCTC
GTCCTGAGGTTGTTACGGCGGTGACGTTTTGGTTCCACGTGCACATGCCT
TTTTCGCGTGCCCATCGAAACAATCTCCCAGCAGCTCGAATCCAAGTTTC
ATCAATCACCATCGTCAACCAAGTTTTGTTTCGCTTCACCTCCCACACCG
GTCTTTTTGGGCACGGAACCGTTGGGGTCAAGTTATGTTCTTGGCCAAGC
TTTCACCCAAGAAGATGCTGCTCAATTATGTTTTCATCTTTTTCCGGAGT
AACTCTTGCGTTAGTCATACAGATGTTGGCCCCGAGTATTTGTCAAAGGC
CAACTTATGTATGGCACTTTCGAGCAAAGAAGAAACGGGCGGAGAGCTTG
TCTCGCACTGAGCTCGGTCGCGTCCGAAACTTCTTGTCTCCTGATCGAAT
AACCCCGCGCCCGATTCCGCGTGCGTGAGAGAAAAGGCCCGTGAGTAGCA
GCGTTCAAGGTTTGATCTCCGCACGCAAGTCAAGAGACGCGGTACCTACC
ATGTGTAGCTTGCCGTTGGACTTCTTAGACCCGCGTGCTGTTCGAGAGCA
AGCGGCACTGGAGTGGACATCAAGAAACAACCATGACCCTCGCGTGGTGT
CCCTTGTACGTTGTTGTGCCTATTGTCGTCTGTTTTCGCCTGCCAGGGAT
CGGCTCAGGGTGGCAACGGAAACGGAGTCTACAACAACTCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15729:453..1896-

>mRNA_Ecto-sp13_S_contig15729.4226.1 ID=mRNA_Ecto-sp13_S_contig15729.4226.1|Name=mRNA_Ecto-sp13_S_contig15729.4226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15729:453..1896- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACAACCAAAGAAGCGGATCCACCCAGGGGGCCGGTGGTAACAACGG
CGGGAGATCGGACGGAGCGCTAGCCCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAACAGCAGGTAAACCGCGTTGAGCAGCGTTCAAGG
TTTGATCTCCGCACGCAAGGATCGGCTCAGGGTGGCAACGGAAACGGAGT
CTACAACAACTCGTGA
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