mRNA_Ecto-sp13_S_contig15726.4224.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15726.4224.1
Unique NamemRNA_Ecto-sp13_S_contig15726.4224.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15726.4224.1 vs. uniprot
Match: A0A6H5KVK9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVK9_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 4.270e-76
Identity = 114/119 (95.80%), Postives = 118/119 (99.16%), Query Frame = 1
Query:   28 GFAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELTASAIIGQLREVWFLAHLVGW 384
            GFAQNDSDPDANTRAA+MGVGFLFLVHCFLQCRDSLFVRPHPGVWRIVHGVGMLYLFA+SVLLVHPKDEAQRLLAIFIPDVKGYTLSRFE GSLECEL+ASA+IGQLREVWFLAHLVGW
Sbjct:   88 GFAQNDSDPDANTRAASMGVGFLFLVHCFLQCRDSLFVRPHPGVWRIVHGVGMLYLFALSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEVGSLECELSASAVIGQLREVWFLAHLVGW 206          
BLAST of mRNA_Ecto-sp13_S_contig15726.4224.1 vs. uniprot
Match: A0A836CG66_9STRA (Phosphatidylserine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG66_9STRA)

HSP 1 Score: 150 bits (380), Expect = 2.040e-40
Identity = 68/128 (53.12%), Postives = 89/128 (69.53%), Query Frame = 1
Query:   28 GFAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLS---------RFEAGSLECELTASAIIGQLREVWFLAHLVGW 384
            GF Q+D+D D  TRAA  GV F+FL HCFLQCRD+LFVRPHPGVWR+VHG+GM+YL  V+VLL H + EA+RLL++   D++    +            A  ++C L+  A++GQLREVWF AH+ GW
Sbjct:   92 GFRQDDADRDTGTRAALAGVTFIFLAHCFLQCRDTLFVRPHPGVWRVVHGLGMVYLLGVAVLLFHTRAEARRLLSVVFTDMESAAAAPGGADGAAPASAAEEMDCTLSWGAVLGQLREVWFAAHVAGW 219          
BLAST of mRNA_Ecto-sp13_S_contig15726.4224.1 vs. uniprot
Match: I2CSE4_NANGC (Phosphatidylserine synthase 2 (Fragment) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=I2CSE4_NANGC)

HSP 1 Score: 139 bits (351), Expect = 1.140e-36
Identity = 61/120 (50.83%), Postives = 83/120 (69.17%), Query Frame = 1
Query:   28 GFAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSL-ECELTASAIIGQLREVWFLAHLVGW 384
            G+A +   P+ N R A   + F+FL HCFLQCRDS+ +RPHPGVWR+VHG+GMLYL  + V++VH K  A+ L+ +F PD+ G T  +     L +C LTA++I  QL EVWF+AH +GW
Sbjct:  101 GYAHHSPTPEGNIRMALFAIAFIFLTHCFLQCRDSVLIRPHPGVWRVVHGIGMLYLMCLGVVMVHDKAGARALVRVFFPDI-GETPQKSPTPELMDCSLTAASIWHQLTEVWFVAHALGW 219          
BLAST of mRNA_Ecto-sp13_S_contig15726.4224.1 vs. uniprot
Match: A0A6G0X7J1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7J1_9STRA)

HSP 1 Score: 115 bits (288), Expect = 9.440e-28
Identity = 53/118 (44.92%), Postives = 67/118 (56.78%), Query Frame = 1
Query:   31 FAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELTASAIIGQLREVWFLAHLVGW 384
            F  +  D   N R   M   F+FLV+CFLQ RD L VRPHPGVWRIVHG+ +LYL  ++ L V     A   + +  P+V     S+     LECEL AS I   +  +WFLAH+ GW
Sbjct:   93 FTHDSDDFAQNVRNGGMSAAFIFLVYCFLQTRDGLLVRPHPGVWRIVHGLAVLYLLIMAALSVQNAQSATAAIRVLFPEVGVKKESKLPRAPLECELNASTIQRGVSSIWFLAHVTGW 210          
BLAST of mRNA_Ecto-sp13_S_contig15726.4224.1 vs. uniprot
Match: A0A6S9GKL1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GKL1_HETAK)

HSP 1 Score: 109 bits (272), Expect = 2.030e-25
Identity = 53/136 (38.97%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 SVVLPPRTKGFAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGS--------LECELTASAIIGQLREVWFLAHLVGW 384
            +V L      + +  +D  +  R     + F FLVHCFLQCRD+L VRPHPGVWR+VHG+GMLYL  ++ LL   + +A R + +  PDV     +R EA +         +C  +   ++ +  EVWF AH++GW
Sbjct:   74 AVALGAFLSSWGEACADEGSRFRLTVAVMSFCFLVHCFLQCRDTLLVRPHPGVWRVVHGLGMLYLLFLAFLLCQDRADALRYVRLLAPDV-----ARLEAQAGASALHTAQDCGFSVPRLVEEFTEVWFYAHVLGW 204          
BLAST of mRNA_Ecto-sp13_S_contig15726.4224.1 vs. uniprot
Match: A0A485KMU7_9STRA (Aste57867_9260 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KMU7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.450e-25
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1
Query:    4 VVLPPRTKGFAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYT-LSRFEAGSLECELTASAIIGQLREVWFLAHLVGW 384
            VV+      F  +  D   N R  ++   F+FLV+CFLQ RD L VRPHPGVWRIVHG+ +LYL  ++ L V     A   + +  P+V G   +       LEC+L A+++   +  +WFLAH+ GW
Sbjct:   86 VVVSVAYYSFTHDSDDFAQNVRNGSISAAFIFLVYCFLQTRDGLLVRPHPGVWRIVHGLAVLYLLIMAALSVQNAKSATAAIRVLFPEVGGKRKVVTTPRPPLECDLNATSLHRGISSIWFLAHITGW 213          
BLAST of mRNA_Ecto-sp13_S_contig15726.4224.1 vs. uniprot
Match: A0A225X2S3_9STRA (Phosphatidylserine synthase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X2S3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.610e-24
Identity = 47/127 (37.01%), Postives = 70/127 (55.12%), Query Frame = 1
Query:    4 VVLPPRTKGFAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELTASAIIGQLREVWFLAHLVGW 384
            VVL      F  +  DP  N R A      +FLV+CFLQ RD L +RPHPGVWR+VHG  ++YL  ++ +LV  ++ A + +    P+V G          L+CE+ + ++   +  +WF AH+ GW
Sbjct:   77 VVLGFSYYSFTHDSQDPVQNARTALFAAILIFLVYCFLQTRDGLMMRPHPGVWRVVHGCSVIYLLLLAAMLVQNRESAMQAMQYVFPEV-GSRPKTVAPAQLQCEINSESLTRGVTSIWFFAHVTGW 202          
BLAST of mRNA_Ecto-sp13_S_contig15726.4224.1 vs. uniprot
Match: A0A2D4BLI8_PYTIN (Phosphatidylserine synthase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLI8_PYTIN)

HSP 1 Score: 106 bits (264), Expect = 3.520e-24
Identity = 48/128 (37.50%), Postives = 67/128 (52.34%), Query Frame = 1
Query:    1 SVVLPPRTKGFAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELTASAIIGQLREVWFLAHLVGW 384
            SVV       F  + +DP  N R        +FLV+CFLQ RD L VRPHPG+WR+VHG  ++YL  ++ + V  +  A   +  F P+V            LEC++ A  I   +  +WFLAH+ GW
Sbjct:  145 SVVAAVSYXSFTHDSNDPVQNVRTGLCTAVLIFLVYCFLQTRDGLMVRPHPGLWRVVHGCSVVYLLLLAAVSVQNRQGAITSMQFFFPEVGSQRKMTQRGQKLECDINADTIYRGVSSIWFLAHVTGW 272          
BLAST of mRNA_Ecto-sp13_S_contig15726.4224.1 vs. uniprot
Match: A0A3R7J365_9STRA (Uncharacterized protein (Fragment) n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J365_9STRA)

HSP 1 Score: 104 bits (259), Expect = 7.230e-24
Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = 1
Query:    4 VVLPPRTKGFAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELTASAIIGQLREVWFLAHLVGW 384
            VVL      F  +  D   N R A      +FLV+CFLQ RD L +RPHPGVWR+VHG  ++YL  ++ +L+  ++ A + +    P+V G          LECE+ + ++   +  +WF AH+ GW
Sbjct:   26 VVLGFSYYSFTHDSQDTTQNVRTALFAAILVFLVYCFLQTRDGLMMRPHPGVWRVVHGCSVVYLLILAAMLLQNRESAMKAMQYLFPEV-GSRPKTVAPAQLECEINSKSLTRGVTSIWFFAHVTGW 151          
BLAST of mRNA_Ecto-sp13_S_contig15726.4224.1 vs. uniprot
Match: A0A1V9Z169_9STRA (Phosphatidylserine synthase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z169_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.640e-23
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 1
Query:   31 FAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPHPGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEAGSLECELTASAIIGQLREVWFLAHLVGW 384
            F  +  D   N R+      F+FL +CFLQ RD L VRPHPG+WRIVHG+ +LYL  ++ L V     A   + +  P+V G       +  L CE+ ++ +   +  +WFLAH+ GW
Sbjct:   78 FTHDSDDFVLNVRSGLFSASFIFLAYCFLQTRDGLLVRPHPGLWRIVHGLSVLYLLLLAALSVQNLQSATAAIRVLFPEV-GVGAKSKPSAPLNCEINSTTLYRGVSSIWFLAHVTGW 194          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15726.4224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVK9_9PHAE4.270e-7695.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CG66_9STRA2.040e-4053.13Phosphatidylserine synthase n=1 Tax=Tribonema minu... [more]
I2CSE4_NANGC1.140e-3650.83Phosphatidylserine synthase 2 (Fragment) n=2 Tax=M... [more]
A0A6G0X7J1_9STRA9.440e-2844.92Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6S9GKL1_HETAK2.030e-2538.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A485KMU7_9STRA6.450e-2539.84Aste57867_9260 protein n=1 Tax=Aphanomyces stellat... [more]
A0A225X2S3_9STRA1.610e-2437.01Phosphatidylserine synthase n=1 Tax=Phytophthora m... [more]
A0A2D4BLI8_PYTIN3.520e-2437.50Phosphatidylserine synthase n=2 Tax=Pythium insidi... [more]
A0A3R7J365_9STRA7.230e-2436.22Uncharacterized protein (Fragment) n=4 Tax=Phytoph... [more]
A0A1V9Z169_9STRA2.640e-2338.14Phosphatidylserine synthase n=1 Tax=Achlya hypogyn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15726contigEcto-sp13_S_contig15726:476..1407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score247.3
Seed ortholog evalue3.9e-63
Seed eggNOG ortholog2880.D7FVQ2
Preferred namePTDSS1
Model size387
KEGG rclassRC00017,RC02950
KEGG koko:K08729,ko:K08730
KEGG ReactionR07376,R07377
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006658,GO:0006659,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0019637,GO:0031984,GO:0042175,GO:0042398,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0098827,GO:1901564,GO:1901566,GO:1901576
Exons2
EggNOG free text desc.Phosphatidylserine synthase
EggNOG OGsKOG2735@1,KOG2735@2759
EC2.7.8.29
Cds size387
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462831.7051625-CDS-Ecto-sp13_S_contig15726:475..6381681462831.7051625-CDS-Ecto-sp13_S_contig15726:475..638Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15726 476..638 -
1681462831.7201936-CDS-Ecto-sp13_S_contig15726:1183..14071681462831.7201936-CDS-Ecto-sp13_S_contig15726:1183..1407Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15726 1184..1407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15726.4224.1prot_Ecto-sp13_S_contig15726.4224.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15726 476..1407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15726.4224.1

>prot_Ecto-sp13_S_contig15726.4224.1 ID=prot_Ecto-sp13_S_contig15726.4224.1|Name=mRNA_Ecto-sp13_S_contig15726.4224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
SVVLPPRTKGFAQNDSDPDANTRAAAMGVGFLFLVHCFLQCRDSLFVRPH
PGVWRIVHGVGMLYLFAVSVLLVHPKDEAQRLLAIFIPDVKGYTLSRFEA
GSLECELTASAIIGQLREVWFLAHLVGW*
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mRNA from alignment at Ecto-sp13_S_contig15726:476..1407-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15726.4224.1 ID=mRNA_Ecto-sp13_S_contig15726.4224.1|Name=mRNA_Ecto-sp13_S_contig15726.4224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=932bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15726:476..1407- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGTGGTTCTTCCCCCACGCACAAAGGGCTTCGCCCAGAACGACTCCGA TCCGGACGCGAACACGCGCGCGGCGGCCATGGGCGTCGGCTTTCTCTTCC TCGTGCACTGCTTCCTGCAGTGCCGAGACTCTCTCTTCGTCCGGCCGCAC CCGGGCGTCTGGCGGATCGTCCACGGGGTCGGCATGCTCTATCTCTTCGC GGTGTCGGTGTTGCTTGTCCACCCGTGAGTCCTTTTCGAGCCTCTTGCTC CTTGAGCGGGGTTCGGCCCTTGTCGGTGTGTGCATGTGCTGCTTTGGCAG GCGAATCGCTGTAGAAGGAGCGTGGATTGGTTTTAGCTTGCTTGCGCCCT GGTATGTTGATTTTTTTTGTCACGAGCAAATAACCCCCTTGCTCTCTCAA ACAGACTCCAAATACGTGTTTTTCGTGATGACGCTTTTTCAGGTTCTTGT ACGTTTGTGATGGCGTGGTTGCTAGCAATACGAGAATACGTGGGTTGAAG TATAACTTCTACACAGTTTGAAGAAACTGTTATCGCCACCACTGAATGTC CACCAACAGCTCATTGTTCAATGTGTCAGCTTCCTCCAGGGCCACCAGTT TCTGGTGGCTCAAAATTGGTACGACTGTCAAGTGTCAGGATCAACATCTC TATCGTCAACATTTCTGTCCGCGACAGCCTGTCTGCCCGCCTCTGTCCTG CTTGTTTTTTATTATCTCTGCTGTCGTTCTGCCGCTCCCCGCTTTCCCGC CTTTGTTGAAAATATGCAGCAAGGACGAAGCGCAGCGGTTACTGGCCATC TTTATCCCTGATGTGAAAGGGTACACGTTGTCCCGCTTTGAGGCTGGCTC CCTCGAGTGCGAGCTCACGGCGAGCGCCATCATCGGCCAGCTGCGGGAGG TTTGGTTCCTGGCGCACCTCGTGGGCTGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15726:476..1407-

>mRNA_Ecto-sp13_S_contig15726.4224.1 ID=mRNA_Ecto-sp13_S_contig15726.4224.1|Name=mRNA_Ecto-sp13_S_contig15726.4224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15726:476..1407- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGTGGTTCTTCCCCCACGCACAAAGGGCTTCGCCCAGAACGACTCCGA
TCCGGACGCGAACACGCGCGCGGCGGCCATGGGCGTCGGCTTTCTCTTCC
TCGTGCACTGCTTCCTGCAGTGCCGAGACTCTCTCTTCGTCCGGCCGCAC
CCGGGCGTCTGGCGGATCGTCCACGGGGTCGGCATGCTCTATCTCTTCGC
GGTGTCGGTGTTGCTTGTCCACCCCAAGGACGAAGCGCAGCGGTTACTGG
CCATCTTTATCCCTGATGTGAAAGGGTACACGTTGTCCCGCTTTGAGGCT
GGCTCCCTCGAGTGCGAGCTCACGGCGAGCGCCATCATCGGCCAGCTGCG
GGAGGTTTGGTTCCTGGCGCACCTCGTGGGCTGGTGA
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